morexGenes - Barley RNA-seq Database

Contig contig_1580269
Source Contig contig_1580269
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1580269 (5814 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1580269

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_18362	3	1393 bp	AK370079	Not available	Available	None
MLOC_18363	1	1182 bp	MLOC_18363.1	Available	Available	None
CDS Structure of MLOC_18362

CDS Structure of MLOC_18363

Contig Sequence (5814 bp)

>contig_1580269 5814 assembly3_WGSMorex_rbca.fasta
TCGTGGTTGTACATGTAAGGTTAGAGTAACGGTCGCAACTTAAACCAATCTGTTTTCGAA
ACAATACACTCACTTGCCACTTCTTTCTCAAGTGGTTACCNNNNNNNNNNNNNNNNNNNN
NNNNNNNTAGTGGCACCCGACGGGGTTTTCGAGAAGTCCTTGAAAACATTTCCTTTTCGA
CACCATGCATATTTCCATCCCATTTGCGTAGCATCTACTCAACAACCTATCTACTTCCCA
CCCACACAACTCTAAGCACAAGTAGAGTTTTGTCATGCAAGTATCAACGAGGAATTAACG
GGGGCAACCCATCAAGGTGGTCACCATAGTCTCCATGATTCAATGCAACAAAGTAAGTGC
TATATGCCATGCAAAAAGGGTTTCAAGTCATGGTCAAGTGGCTACTTGCCTGGCTCAACA
AAGTCTCCGGGGTCTTCAAAGTCTTCTGGTCCAAGCCCTTCGTCAACAACTCAATCTATC
GTCGCAATTATAACGGGAATAATAGGACCACGACAAACACAGAGAAAATAAAGTCTTCCT
AAAAATGTCACACCATTTTTGTAAAATAGTGGGGTGAATATTTGCTTTGTAAAAATTATT
GGAATTTAGTTTTGAAGTATAAAAAGTAACAAAAAGCATTTTAGCAGATGTTTAAAATAT
TCAAAACTAGGTTTTTAAATAAAACAATGTATAAAACCTTTTGGAAAAATTACACAAGTA
GCACCATTAAATAGGTGGGGGTTTTAGAAATTTTTAGGAGTTGGAATCATTGCATTTGGA
TCTATATTTAAATCTAGGGGATTTTTGCAAGTTTTTGATAATTTAGAAAAAGAAAAAGAC
AACTGCTGATAGTGGGCCGAATCAGAAGGGCACCCGAGCCGGCCTAGAAGAAACGGCCCA
AGGGCAAAGTGGTGCGCGCGCAGGCCGGTGTTTGAACCCGACCGGTGGCCCCCACCATCT
GCAGAGAGAGAGAGAGAGAGAGCGGCGAGAGGGGAGGCGGGGCTCACCGACGGCGATTCT
GGTGGCCGTTCGAAGAATGGGTGGCATGGTTGGGCTCAGGGCTTCGTCGCACGTCGGATG
ATGGTGGAGAGGGGCGCCGGAGAGCCCCTGTTCGCTGGCGACTAGGAGTCCGGCGGCAAT
GCTTCGGGAAGGTGAAGCCCCGGTCGCCCTGCGAACCAAACGGAGAGGAGAACAGAGGGG
AGGGGAATGGGTTAGGGGGTTGCGGCGGCTCCAGATCGAGGAAGAAGGGCCGACGGGGAG
GGTTCTCACCATGCGACGCTGGCGGCCCGAAGCAGCGAGCTCCGGCTCGAACCCTAGCGT
CTGAGCACCAAAATGGAGAGGGAGAGGTGTGGGAGTGCGATTGGGAGGAGGGGAAGCGAG
CAGGGAGCAAGGGAGAGCTAGGGGAGGCCTTTATAGGGGAGTAAACAACTGGGGAAAATG
CCTTGGATGCTCTAGTTGCTCACTAGAATAAGAGGGGAGAGGAGAGAGAGGTAAAACCTT
GTTGTCCAGGCTAGAAATGAGGATTTTTACCCTGCTTCATGATTGAGCCTTGGCCCAAAA
TTATTACTGGGGGTAGAAGGTGACTTGTAGGGGCTGTGGTAAAAAGATGGGGTAAAGGAG
AATGGTGTTTGATGCTGTTTTGAGCGAGGTAAAATTTCCCACTTGCAGTGAGATTTAACA
GGATCAATTGATGGGTAAAAATGAGAGGGATCACAAGTTTTGAGCTCATTTGAGGAAAGT
TGACAATGTAAACATGAAAACCCCTAGAAATAGACAGGATCAGATTTCTATAGACTTAGC
TGGGCAAATCTATCCCCACAAATGCACAACNNNNNNNAGCATCCTTATTTGGGGTCTAGA
TCACTCCTGCAAAGTTTGAGATCAATTGGATAAACTTGNNNNTGTAAAGTTGCTCAAATT
TGGTTCTGCAAAGAGAGGGTTTTGGGATATTTTGGTGAACCGAATCAACTTGGATTCAGA
TGAAACTTGGCAAGATCATCACATATACCATGGGTGACTTGTTAGAATTTTCGTGGAATT
TATTGAGAATATTTCCTATGGAAATATTTTAAAAGCTTTAAATAGGCAGAAAGGGTTTTG
AGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAAACTCTTATATATGGAAAAT
ACATGTCCACTGAGTTTCCCTAAATTTTCTCAAATATTTTTTAAGTAAGAAAATATTTTT
TCCCTATATAATACCATTTCTGGCCTCAGAAAGAAGTATTTAAATAAAATAGGATAGTAA
CTTTCAAAATTATTATTTTGTGGTTTTGGAAAGTCTTTTTGACAGTAGGATCCAAATAAA
ATCTTTAGGGCAAAACATTTCTCCTAAATTGAGGACTTGTAGTACAAATCTCAACTCAGG
GTTTTTTGAAAGCTTAAAGTAAATAAATGCCTTTTGGTTAAAGTAATATTTTTACAAAAA
TAGTTTCTAGTCCTATACACATGGCATGACCGCAGGGCAAAGGTTTGGGGTCAAGGAGAT
GAGTTCTTGAGAGAAGAATAATTTCTGTGATCTAAAACACAAACAATCACACAAGCAAGT
AGCAACCAGATCAAACATTATAAGCACACAAAAAGTTTTAAATGGTTCTAAATTTTGTAA
AACATAGTGTGGCAAAGTGGTACAAACACAGGGTGTGACAAGTAGACATATAGTTGTTTT
GAACCTTGTGTTGCAATGGGCAATACCGTGCTAAAGATAGCCAGGATGCATGGCTGCAAG
TGATTAGGTAGATATGTGCATATTTGGGAGAGTATATCTATTCTTCTTGTCTGCATGAAA
CGTAGATATGTGGCATCGTTATGACACTGTATGGTGGATGCTCAGGCTCTTAACCTTTCC
TAACACAGTACAAATCCCGCCCAACTCCCTTGTTTCCTTACTGCTGCAAGTCCCTGTCCA
ATAGGTGGCCATCTCTCCATCTTCTGTTGCAAATATGTTTGGCCTAACTGAGCTGCAGCA
TTGGCGCCGTGTACTAGCGTGCGCAACATGTAGCGACAAATGGTAGACCTACCAGATGGA
TTAGACACTATTATTGAAGCCACAGTTTTTTTAATAGTTTTTCTGTTTAATGTTCAGTGC
TTCTGGTAGGCTTATATGCATGCTGGATATATTGCCTTCATTTTAGCGTGTATTTACTCC
ATGCATGTGGGATTCAATAATGTCCTATGTTACTAGTGCATCTAGTTTCTGCTCATTCCT
AAACTGTGTCCGTCTTTTTTTTCTGAACTCCTCTCGATCTTTAACTCAGGGAAAGATGAG
CTCTCAAACTTACCGTCCTCCAAAACCTGAAGATGTTGCCACTATCTGCTACACGAGTGG
CACTACTGGCACACCAAAGGTAAATCATTCACTGTTCTTATTATTCTTTGCTTCATCACG
AAATTCTTCTACTTCTACTTTCAGACATGTGATATTGGATGCCAATCTTTTCCCAGGGAG
CTGTTCTTTCTCATGAGAACTTAATCGCGAATGTTGCTGGATCAAGCTTGGGCGTTAAAT
TTTACCCCTCCGACGTGTGAGGATTTGATATACTCTTTTCTTTTTTGCCGTAGCTTATTC
AATGTACAAAAACTCATTTTTTGTATGATAATAATGTTGACATGTCTCCTCAGGTATATC
TCATATCTACCTTTAGCTCACATCTATGAGAGAGCTAACCAAATTGCACTGCTTCACTAT
GGTGTTGCCATTGGATTTTACCAAGGGGTATGTAGATTTGAAACTATTTAAGATGAGAGT
TAGTAGTACTTTGCATTGTTGTTGGAGTAACTAGGTACCTATAGAAACTGAACGGCATGA
AGGACATGTATTGAGAGAAGTAACTGATAATATGTGATCTTGTATAAGCTCTACTCATCT
AATGCAATAGTTTGCACTTGCGTTGTTTCTAGTCTGGGTAACTTCTCAAAAAGCTGTGGA
CCGTTCAGAGACCATTTGAAGGCCATATGCATCAAGATCTTTCATCACAAAGCTAATATT
TTAACCATCCAGTTATAGTACTTGTCATGAGTATATTACCGCTGTTTCCAGGATAATTTG
AAGCTGATGGATGATTTGGCTGCTTTGAGACCAACAGTATTCGCAAGTGTTCCCCGGCTA
TATAACAGAATTTATTCTGCGTAATGCAACTATACCAGTTATTACATATTTTCATGTTCA
TTGTGCATATTGCTAGCCATACCTTTTCCGAGGTCCATTTTCTTCAACTGGGTTTTGTTA
ACTGGTTCATTCCTTGTTTACTCCATAGAATCACAAATGCTGTGAAGGATTCTGGTGGGC
TAAAAGAAAGATTATTCCGTACTGCGTACAACGCCAAGAGGCAAGCACTTATGAAAGGTA
AGCACATCATGAAGTTCATTTAAGTTCAGTGTCCCATCCATCCTATTTTTTTCGAGAAAC
CAATTAGCATAATTATTGTTCACCACTGAAGCATGAAATCAGCACACCAATACTTGTACA
CCGTGCACCAACTAGTTGTTACACGATTCGCTTTATGCACCTGTGTATGTTGACCATAAC
ACGTTCTGTAGATTGATTGATTCTTGTTTGAATTGAAAACTGTAGCAGCAGCCCCAACAG
TAGAATTTTATTAGAGACCAAGCATATGCAGAAGTATGTGCACGCAAAATACTTAAACAA
TTTTATAAAATCCAACATTGTTCCTTTTAAAGAGCCTATACTGAAGATGAAGTTTTATTC
CTTCTCCTTCCTGTCCAAATTGGTGCCCAGGTAACATAAGTGTGACCAGGGTTCCATTTT
CCTTCAGGTTAGCTTTAGTCAGATTTGGGCCCGCTTTCTTGTGCTTTTTTCGCACTCACT
TAGTTTAGAAGTTTATTGTGCTTTCTCAAAGTAGTCCTAAATGCCATAATACTGTCTGTT
TTTTCCTTGTAAATTGAACGCTAGATATGAAGATAAATGGCTGCTGACATGTTTAACCTA
GAAACTGTAAATACCAAAGTTGCAGGTGAACGACCAAATGGGTTCCAAATCTTTATGTAT
GTCACTCTTAATAAGATTAAAAGGGTTGATATGTGTGATAATTGGAAATATAAAGCTTAT
GCAGCATTTTCATGATTTTCTAGTAGATAGCAAGTCATCACAATTTCCAAGTTGGAAACA
TGGATAGTAATCCTCTTGTGTTAGTTATATTTCTGTTGCTTAGCAATGACTGAATTCTGC
AAGATGGAAAATTCATTATTCTTGTAAGCACACCATATTTTGATCCATTTTCATTCCCTT
GCATATATAATGAATCTTACTTACTACATTGTGTTTTAGGACGAAATCCTTCCCCAATGT
GGGATAAGTTGGTATTTAACAAAATAAAAGCTAGGCTTGGTGGAAGAGTGAGGCTTATGA
CTTCAGGCGCTTCTCCACTGTCAGCAGATGTAATGGAATTCCTAAGAATGTAAGGTTATT
TCTTGTGTGCTGCCGTGTGTGATTTTTAAGTTCATGTTCTTAGAAAGTAAACACTGTTTT
AACTTCTTGTAGATGCTTTGGTGGTGAGGTTCTTGAAGGCTATGGAATGACAGAGACATC
TTGTGTCATCACTACAATGGATATTGGTGACAAATTAATTGGTCATGTTGGATCACCAAA
TCCTTCTTGTGGTAGGTTGTGTTTGGTTAAAATTTGTGCTTAGTTTCAGTGCGGAGCTAG
ATGTAAAATACAAGGGTTTGGGAGGCCAAAAGCTAAAAAAATCTCATCTAACCCCTCACA
TATTTTTTTCCTTCACAAATTGGTTCAATGTTGGGGGGGGGGGGGGGGCCCCCC