Contig Data
morexGenes
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Map Locations of contig_158022 (4117 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_158022

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_18346 2 1966 bp MLOC_18346.1 Available Available LOC_Os01g59070.1, FRAME:-1, EVALUE:0.0, 13101.m06274 protein expressed protein
MLOC_18345 1 142 bp None Available Available None





CDS Structure of MLOC_18346






CDS Structure of MLOC_18345






Contig Sequence (4117 bp)

>contig_158022 4117 assembly3_WGSMorex_rbca.fasta
GCTCTTAGATAGGATACAAGATGAGGCTAGGTGCTGGGCTCGGGCTGGGGACAAAGGGCT
TAGGGTAGCCTTGCCCCCAACCTGGGATGTCCACTAGACCTACATGTAACCGTGTTGTAA
CCACCTCTTCGGAGGCTTTAAACTATCCCTCCTTTTCAATGCAAAGAAACGCAAGGCTTT
TGCGTTTTCTCGAAAAAAAAATCTCAAAATGTGGCTACTATAAAGTAGGAGCACTAGCCA
TTCATAATTGTGATTTCACCATGTTCTTTTTTTCTCTTCGGAAGCGCCAGTTCAGAAGTA
ATGGATGGGAGGACCATGATCAAGGTATAGATATTAGCGGAACAAAGTCTCGTCGTTATC
TGGAAAAAGTGAGCAACTCCTAGATAAGTACTCCTACCAATGTTCAACAGTTTATAGTAA
TCAAAAGCAATTGGTCTGCACGTATTTGAAGATCATCAATTTGAGTAACCAAATATGAGT
TATATGCCAAAAAATATACCACTATAAGCTTCTTCCAAAAAGAATTCAAAGGTACTTTTT
GAATAATTATACATATTTCATTGGACAAATTGATGATCTAGGAATATGTGCAGGCCTTCT
ATACCGTAACAGAGGTGGTACCTCATATCCATCCCTGGCCCTAGCATACCTGCAAAGATA
TTAGGTTTTAACCAAAGTTCATACAATTGGCTTAGATAACAAGGCATCTTTACACATGAT
GTTTTGCACAGAGCAATTCAGAGAGAAGTACTTGCTGAGTTTGTATGGCTCCTTCCAGAT
TTCCTAAAGAGGGCAGTATTATTGTTGTTCGTCTCACTTTATGTAGCATGTTTAATCAAC
GTAATGCGCATCTGCCATAATATTACAGTAACAACGTCACTGAAGCTATTTATTTCATTC
CGTTGTTACACCCTCACCGACCGGAAGATCTCTACTGGAAGTTGCTCCTTAACTATAAAG
GTTTCCTTGAATATACATAACTTATCATACTTCAGATAGCTCGATATCCAAGTAATAAAT
TTGTTTCGTCAAGCAAGAAGTAAAAAATGGTAAGTATATTTATCATAAATTTAGGAGATG
CCGTATTGCAAATATAGCCTATCCATTTTAGCTAGGAACAAGCATTGCTTATCCGAAAAC
AGAGAAGCATAACATCTGGAACATATGCTATATTGCAGCACTCTTCTCTACCTTATCTAC
TCTATCAAGGAGATAGCACATAGAGAAAAAAATAAAAGCAAGATAAAGTAGTTATAATGT
AAAGTGTGCTCGCTGATGCTGGGGGTTAACATAAGTGAAATGTAAATGTACATGAAAGAT
GAAGCCTTGATCAGCGAAGGTTCCATGGAACCGAATGTAAGTGTACATATGGCACTATGT
GTAGTTTCAATCAGACCACAGAAGAAACGTTCCTTGCTTATCAAAGAAATATTCGTCGCT
TTGCAGGTCAAGCAGCACATCAACTTTAGATTGTCGTACGGCTATATTTCAGTTTCCATG
ACCCTTTAGTAGTCAAGGAAGACAGCATATTGTTATAACTAGTAAGCAAATGCTCATAGG
AGGATATGTTATTCATAGCATGTCATATGCAACAGAAGACAGTACTCATGATTATAATTA
TGTGCTTCACTTAAAGAATAGATGCCCAGAAGGCCAGAACACCTATGTACTGATAAAAGC
TATACATCATTGACTACTCGTGAGTCATAACTATCATATGTTGAAATGTATTGGGGAAAC
ACAAAGTTATGAATTCAACTAAATAGCCAAAGGATATGTGAATTAGTACAATGATTCCTT
ACAGGAAATGAGCAGTGATTAGTGCTAAGGAACTAATTGATCAGAACAGGTACTCTTAGC
AGCACGGAGCTATACATTGCTGGAATGCTGGTTACGAAAATTCCTCTCGAAGTGATACTG
ACTGGATCATCTATACGCTAAACCTGACAACAAAGTTCAGACATGGTCTACACACAACTC
ACTTGAAAAAAGCATGTCGTGTTCTCCAACACCCTCTTATCTTGGAGAAGAAATCAGCGG
AGCACCTCGACCTTCTTCTTGCCCTTGAGGAAGACCTCCCTGTCAACTAGTTCACGCATG
TACCCATCAAACTTCACAGGAACTCCAGCATTTAGCCTCTTCATCTCCAGGAACCACTTG
CTGTCTTTTCTCCAGAGCCTCTGAAACTCATCCAGGTAACACAAGTTGTTGTGCTTTGCC
TTAAGCGCCTCCATGGAGACCGTGTTGATCCCCTCTCCAGCAATATACACTTGCCTTCCT
ACATCAACACCATCCTCGATTCCCCGAATGAGGTCCTCAACACTGCCACCAACATGGACG
GAATCAAAGTCTTGTTGCATACTCGAGATGATATCATTAACAATGCTCATCAAACTTGGT
GCCAAACATATGGCATGGTGCGGCAGAGAGAGCACACGCTCCGCCTCATCCTCACACACA
TGGTACCAGTAATTCCCTGGCTCCACGTCCCCAAATTTCCTGACAATCAGGGAGTCCGTA
GCCTTGGAGAACTTGGTGGGGCCAACCCTGGTGTCCTCAATGAGCCGGAGCCCGAGCTGG
CCCTGCGCTCCCCACCTGTCCCAATCCTCCCAGAACTGTCTTTCCTCGATGATGTCCACC
ACTGATGACCTGAGATGGTCGACGTCGAAGTAGAAGGCGAGGCGCTTGCCCTCCTCGGGC
ATGCCGGCGGCTGTGTAGGAGGCCGCGAGGCAGAGGGTGAGGTCGAGGACGAGGGTGCGG
TTGAGGTAGCGGGCCTCGGCGAGGGCGCAGAGCAGGCTGCGCGTGTAGTGCGGCATGGGC
TTGCAGCGGTCGCCTCCACCGTGGTAGGAGAGGTAGGTGGCGGCGGTGAACTGGGACCGG
GAGAGCGGCGGCGGGGGCGGTGCGGCGGTGGCATTGGAGGCGCCGGGGCGAGGCTTGCGG
GCGTTGGGGCCGGAGTGGTAATCGCCGATGGAGGTGACGGAGTAGGCGCAGGTGTGGGGG
TCCCGCGTGATGGCGAAGCGGCGGTAGTCCTTGGTGGTGGCGGTGGGGGAGGCGGAGGCG
GAGGAGTTGGTGCGGGCGCGCCATGCCATGTCGCAGGAAGCGGAGGGCGGGTCGCCGGGG
ACGGGGCGGCCGAAGCGGGCGAAATGGACGGCGGGGAAAGCGTCGATGGCGCTGCGCATC
ATGAGGTGGAAGAGGCGCGGGTCGGCGCAGTCCAGCGGGGAGGAGAGGTCGCAGGATGAG
GCGTCCTCCTGCTCCTGATCTTCATGGTCCTGGTGCTGCAGGTGGTGGTGGGGCGTGGAG
GCGAGGGGGGGAGGGGTGTAGATGGAGATGGAGGGGGCGAGTGGGAGGCGGAGCAGGGTG
AGGATGAGGAAGGCGATGAGGATGATGGCGGCGGCGACGTGCGCCGACGAGGAGAGGAAG
GCGCCGCGCCCCAGGAGCGGCCTGCTCGGATCCATAGTGACGGCGGCGAGATTTGGGTCG
GTTCCGAGTTCGGACCACCGCGCGTGCCGCTGTGGCCTTTCGGCCGTGCAACTGTGAAGT
GTCCGTCTTTGTCAGTTTGTCTGGCCCATCGATCATTTTTTTCCTCAAAATTATATCTTG
AAATTTGAACTTCTACATGAAATCTGATTTGAACCATAAGTACTGGTTTTTTGAACCAGA
CCATGCTAACCCTAGCCAACAACTATTTTCCGTGTTACGAATCAATCTGTGTGGTTGGAT
GATTATTGAAAAGACAGTGATATCTAACACATGAGGATTCAAATCCGATGCTTGCATTAT
TTTTGTATTTATTTTATAATTTTCGACGATGCGCATTCGATGCGTCTGCGTTTGTAGTGT
AGTGTGTTTTAAAAAAATTGTCATCCTCGTCCAAAACGTGTTTGCTCTTCAAGTTTGTTG
ATGTGGCATACTTGAAAGAGATAACTCGTCCATGAGGTATAATACTCGGTATGAATAAGG
ATGTCGTTGGATTGTTGAAGAACATTGTATGAAAAACAAAACAAAATCTTACACACCCGC
ACGATCTATCCATGAAGATGTATAGCTATGAGAGAGGAAGTGTATCCACATACCCTTGCA
GATCGCTAAGCGGAATCGTATATAACGTGGTTGATGT