morexGenes - Barley RNA-seq Database

Contig contig_158014

Source Contig contig_158014

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_158014 (5581 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location

Predicted Genes from contig_158014

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_18326	1	2006 bp	MLOC_18326.1	Available	Available	LOC_Os03g19240.1, FRAME:+3, EVALUE:0.0, 13103.m02299 protein AMP-binding enzyme, putative, expressed

CDS Structure of MLOC_18326

Contig Sequence (5581 bp)

>contig_158014 5581 assembly3_WGSMorex_rbca.fasta
AAAGCAACCGGGGGGGGCCACTCAGGAGGGAGGGAGAGAGGGGGGCGGGGGCGGCGTTGG
GGGAGAAATGGCGGCGGAGAGGGACATCGACGACCTGCCGCGGAACGCGGCCAACTACAC
GGCGCTCACGCCGCTCTGGTTCCTCGAGCGCGCCGCGCTCGCGCACCCGGCCCGCGCGTC
CGTCGTGCACGGCGCCGTGCGCTACACCTGGGCCGACACCTACCGCCGCTGCCGCCGCCT
CGCCTCCGCCCTCGCCCGCCGGTCCGTCGCCCACGGGAGCACGGTACGGGATGCCATCTC
TCTCCTCCTCCTCCATTTCTCCCCTCTCCCCCCCTTCCTCCACGTGTGCCTCTCGTCCGG
TCCGGGGTGTTCTGACTGAACTGTGCCATAGGCCGTACCTCCCTAGACTTGCACGCTCGT
GTCCTATGAACTTCACGCATCAGGTCCTATGAACCTGTATAAGTGTTTCAGTAGATACAC
GAAGTAATTTCGATTGTCAAACAACGATCCTGTCACATTTTAACCCTATTGAATCCAAAG
TTTGACCATGTAGTTGCTTAGTAAGGTTGATCAGATATTGCAAAATTTCCATCAAACATT
CGAATTACATATAACAGTTCCCCGTTGATCTCACTCAGAAAATTCAGTTGGGGTTTAGCT
CAGGTGTCATACCATCTCTACTTACAAATAATCAACTGAAATGTTCAGATTCAAGTTCGC
ACAAGTGTAAGGACATGGCTATACCGCATTCTATTCGGAGAAAAAAAAAACATAGAAACT
TTCCATTCGTCAATTCAGAGTTCAAACTTGCCTTGAGCGGTAAAACATTATTTTCGGAGA
GTCAGAAACAGGTAGCATCTCGTTATTCACTTACTCCCTCCGTTCCTAAATATAAGTCTT
TTTAAAGATTACACTAGGGGACTACATACGGAGCAAAATGAGTGAATCTTTACTTTAATG
TATGTCTATATACATCCGTATGTAGTTTTCTAGTGGAAACTCTATAAAGACTTATATTTA
GGAACGGAGGGAGTATATGCTAACCTTCCAAATTTTATTCGAAAAAACAAAACATAGAAA
CTTTCCATTCGATCATTCAAACTTGCCTGGAGTGGTAAAACGTTATTTTCGGAGAGTCAG
AAATATATAGATTCTCGTTATTCCATTATGCTACTTTCAAAAGGTTACATCTGTAGCTAT
TTGTGGTCATCAATGAGCTTTCAGCTCCTGGATTTCCTGTAACAGATATGAGGTTCCATC
ATTTGATGGACTATTAATACATGGTGGGTGAATGTTGTGCTTCTTCAGTCCTCAACTTGT
CGTATGATAGGAATGCATGTTAAAAGCTTCTCCTTTCAACACACATGTCTTGTGCATTTC
AATTAAACAAACACATGCTGAGATTTGATGGTTCACATGAAGAAAGAAATGGAGTGGCAT
ATTTCTCAAAGTGATATAAAGGATATTGTTTCACATATTGCTGTATCCAAATGGTGTTAT
CTTTTCTATTGAATGAATGGCATACACCAGCGGCCTCCCAACCAAAAGTCCAAACTGATG
GAGAAGGGCGGACAATATATTTCAAAATTTCCATGTTTCTGTATGACCGTAATAACATAC
TTGGTCAATATCTTGAATGTATATATTTTTTTGGGAAATAAATTGAGGAATTGTATGGTC
TTTTACCAATGTGGCATTGCTGGTCTAGAAGAATATCTGGACTATATAACACTCATCATC
TACGAACACACGGGAGCTAGAATTGCTACTAGCATCTATTATTAGAGTTCCTAAGTTCTG
ATCAGAAAATATTGTTTGAACTAAGGTTCCATATTTCAATATTGCTGCTTAACACTTTTC
GAGTTACCTTTGGTTTTGAGCTTTGCAGCGTATCTTGTATAAAGATGAGTTGGCAAGCTT
GCAGCTATTAAAAAAAGAGTACTGTTAGAGGGAAATAGACACCAGTTAAATTAAGAAGTA
GCCAAGGATTCGATCCCAGGCTGTCTAGATCACCATCCATGGTGCTGGGCTGCTGGCCAG
TAAAGCCCCTGGGTGACTCTGAAAAGCATGCGTCTACACAGTGACCATCATCTGGTAGTG
TGGAGTGGAACTCTATGCAAGCTGGGTTTTGTATTGGTGCTTTCATCACTCTATTCATCT
TGTCGACACCAGAGCTTGTGTTTTCTAAGTTCAAACATTCAATAGATTTGCGTTATACAG
AAGATTAACTGCAGAAATCACCTTGAAGACAGTAATATCTCTTCAAGTGCTACTGTAGTA
GTTTGATTCACTATTTCGTGCTAGCGAATACTACTGCATGCATAGAATATATTCTGTTAT
GTTTATATTGATTATCTTCTCTTGTATCTGTTAGGTGGCTGTAATAGCTCCAAATATCCC
AGCAATTTACGAAGCTCATTTTGGAGTCCCCATGGCTGGAGCAGTGGTCAACTGTGTCAA
CATTCGATTAAATGCTCCCACAGTTGCATTTCTGTTGGAGCACTCGTCAGCCGAAGTTGT
GATGGTTGACCAAGAATTTTTCTCCCTGGCAGAGGATTCTTTGAGGATTATAGCAGATCA
AAAGAAATGTTCTTTCAAAAAGCCACTTGTAATAGTTATTGGTGATCATACCTGTGATCC
TTCAGCCCTCCAAGATGCTCTGAGAACAGGGGCAATCGAATATGAGAAGTTCTTGGAAAC
TGGCGACCCTGAATTTGCATGGAAACCACCGCAGGATGAATGGAAGAGTATTGCCTTAGG
TTATACTTCTGGAACAACATCTAGCCCAAAGGGCGTGGTTTTGCATCACAGGGGTGCTTA
CCTAATGTCACTCAGTGGTGCTCTTGTATGGAAAATGAACGACGGCGCGGTTTACCTGTG
GACTTTGCCGATGTTCCACTGCAACGGCTGGTGCTATACATGGACGCTTGCTGCTATCTG
TGGAACAAGCATATGTCTTCGTCAGGTATACCTCACTATCTTGTAATCATGCTTCATTAG
GGACCTTCTTACTGTCAAATGTTTAACATAAACCCTGCACAGAACTCAAGTAGTAAAACT
TATTTTAGAATGCATACATATGAGCTACTCACGAAATCTAATGCTTTGGGGAATATTGTT
TCTGTATGAATAGAAGTTATTTATGTATAGAACAGTAAGTATGAGACCTCGATGATCTGG
TTGAAAAGTATATTTCATAGGTTGATGCAATAAATCTGAAGTACCATGATGAATACTAAC
AATAAATGATGCTACTCTACTGAAAGAAATCATTCATGGAGTCATTGAGTATGACTCACA
GTAAAGCTAACTTGATTCACTGTATCAGCTGTAGTACTTTGAACACTAAATCTGCAATAG
CAACACTGTTGAATTATAAAAGAAATTACACCAAGATATGCAAAATACTAGCATGATCCT
GGGTTCTGGTGTACCCATTTCCCAAAACTTAGCAACACAAGAAAAACGTATTTCTATGTT
TTTGTCATGAACTGCTTGAAACAAGTTTGGCATACTTGATTGTTGTTTTGGCCCAAGGAT
GTCGGTGCCTAGAATGTGTAAGCTTTGAAATTAAGGGATTTAGCTTGGCTTATCTTTTTT
TTGCCGCTCAGTAGGATACACAGAGCCACAACGTTCATACAAAATATTCAAAATGAGAAA
CAAACTGGAAAGCAAGACAAGTTTGAGTGTTTGACAACAGCCCCGTGGCTGAAATAAAGA
ATCACTTAGATGAGTTCACTTTGAACCACTTGTATTGATTTTGAACTTTGACGGTAAATG
TTGTTGGCAACTCACTGAATCATTCATTCTTGTGTTCAGTACAGAGTACAGTGAGCAATT
TAACCATCTCATCTCACAAGCATGTGGTTCTCTTGTGTTGACCCATATTTACAGGTCACA
GCGAAGGCTATCTTCTCAGCGATAGCCAACCAAGGAGTAACTCACTTCTGTGGGGCGCCA
GTTGTGCTCAACACCATCATCAACGCCCCTCCAGTTGACACCATTCTCCCGCTGCCTCGC
GTTGTCGATGTCATGACTGCTGGCGCTGCCCCACCGCCCTCAGTCCTTGCCGCAATGTCG
AAGCTCGGTTTCCGTGTCTCTCATACGTATGGCCTCTCGGAGACATATGGGCCATCTACG
GTGTGTGCATGGAAGCCAGAGTGGGACATCCTGCCAGATGACGAGCGTGCTCGGCTCCAA
TCTCGCCAGGGCATTCGCTATGTAGGCCTGGAGGGCCTTGACGTGGTCGACCCCAAGTCC
ATGGCGCCAGTCCCAGCAGACGGCTCCACCCTCGGAGAGATTGTCATGCGAGGCAACGCC
GTCATGAAGGGTTACCTGAAGAATCCCAAGGCCAACGCCGAGGCATTTGAAAACGGGTGG
TTCCATTCCGGTGATCTGGGCGTTCGACACCCGGACGGCTACATCGAGGTGAAGGACCGA
GCCAAGGACATCATCATTTCCGGCGGGGAGAACATCAGCAGCCTGGAGGTGGAGAAGGCG
GTCTACATGCACCCGGCGGTGCTCGAGGCGTCGGTCGTGGCGCGGGCCGACGAGCAGTGG
GGGGAGTCGCCATGCGCCTTTGTCACGCTCAAGGACGGCGTGGACAGCTCCGACGAAGCA
GCAATGGCTGCTAACGTGATCAAGTTCTGCCGCGAGCGCCTGCCGGGCTACTGGGTCCCC
AAGTCCGTGGTGTTCGGGCCGCTGCCCAAGACGGCAACGGGTAAGATCAAGAAGCATGAG
CTGAGAGCTAAGGCCAAGGAACTGGGCCCGGTCCGGAAGAGCAGGATGTGAGCTAGGTTA
AAACGTCTTGTGCCCTCGTCCAGAGCTGTCGTTTGGCGTCGGTGTACTGTATTCTTAGGA
CACTACAATGTATTTTGTTATATGACGCCACTTCTGTACGAACTAACGCGCTTGCTGAAT
TGTTTCTTACTGGCTGCTTATCGTGTATATGACTCGATGTACTCCCATTAGAGTGTTACT
AGTAAAAGGGCCCGTGCGTTGCATCGGGTGTACAAAAAATATATATATATGATTAGACAG
TTGAAAAAAACTATCAAAAGGGTTCGTGCGTTGCAACGGATGTATAGACAACATATTGTT
AATAAAAATCTCCATGCACACCAAGTAACATTGTGTGACTTTTTTTACCATTATAAAACA
CATTTTGATTTTTGATTTTTTTTCTCCATATTTTCCACGAAGCTAAAAAGTTTAAAGTAT
CTGTGCATCAATTATTTTAATATGTATTCCTTCAGCCCCCTTCATTTCTTTTACCGNNNG
CATCATTTTCCTTTTTCTGTCACCTCGTGTCTGTTTTTCCTTTATTTCTTCTTTGTCATC
CTTCCTTATTTTCTTTTTATTAAAACCTTACAAGAAGGTATCTACACGGTCAATATAGAG
TGACCGCAAGGGGTTGGGGGAGGCAATCAAGGGGAAAGTGGGTCATGGCCAATCAAAGAA
GATTATGTGTATCTGAGTTGGTGTCCACATATAAACAATTCAACGGCACTCCACATATAA
GGTGTTGAAGGGGCAGCTCCAGAAAAGACAATCCCTGGTTTTCAGTTCTTCTGGGTTGCA
G