Map Locations of contig_1579790 (6271 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1579790

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_18231 3 2878 bp AK372941 Available Available None





CDS Structure of MLOC_18231






Contig Sequence (6271 bp)

>contig_1579790 6271 assembly3_WGSMorex_rbca.fasta
GCAGGTGCGCCGCACGCGCCCGGGCGCACCGCCTGGGACGCCCAACCCGATGTGGAACGA
GGAGTTCATGTTTGTGGCGTCCGAGCCGTTCGACGAGCCCCTGCTCGTCACCGTGGAAGA
CCGCGTCGGGCCAGGCCGCGACGAGCCGCTCGGCCGCATTATGCTGCCCCTCAACGCTGC
AATGCCGCGCCATGACCACTTCGGCAAGCCCGTGGAGCCGCGCTGGTACAGCCTTGCGCG
TCCCAGCGACGACGGTGAGAAGAAGGAAGGCAAGTTCGCGAGCAAGATACAGCTTCGGAT
GTCGCTCGACTTTGGGTACCATGTTCTTGACGAGTCGACTTACTACAGCAGCGATCTCCA
GCCATCGTCAAAGCACACACGGAAGCCGAGCATTGGGATCCTTGAGGTGGGGATTCTGGG
TGCGCGCAACCTGATACCCATGAAGGCCAAGGATGGTCGCACCACCGATGCTTACTGTGT
TGCCAAGTATGGTCCCAAATGGGTGCGCACAAGAACCATTCTCAACACACTGAATCCGCA
GTGGAATGAGCAGTATACCTGGGAGGTGTTTGATCCATGCACCGTGATCACAGTGGTGGT
GTTCGACAATACACAGATTGGGAGCAAGAACGGTGATGCCCGGGATGAAAGCATTGGCAA
GGTCAGAATTCGTCTCTCGACGCTGGAGACTGACCGGGTGTACACCCATTTCTACCCTTT
GCTAGCTCTCAAGCCAAGCGGTCTGAAGAAGACCGGTGAGCTGCATTTGGCCGTGCGGTT
TACGTGCACCGCGTGGGTGAACATGATGGCAATGTATGGCCGTCCCCTGCTGCCGAAGAT
GCACTACTCACAACCAATATCAGTGATGCAGTTGGACTACCTGAGGCACCAGGCGATGCA
GATTGTTTCGGCGAGGCTGAGCCGTGCCGAGCCTCCTCTCCGCAGGGAGGTTGTGGAGTA
CACGCTCGATGTGGGCTCACACATGTTTAGTCTCCGGCGCAGCAAGGCCAACTTCTATCG
CATCACTTCGCTGTTCTGTGGTTTTGCCTCGATGGCCAAGTGGTATGATGGCATCAGGAG
CTGGCGAAACCCGATCACAACAATGCTGGTGCACATGTTGTTCCTGATACTGATCTGCTA
CCCGGAGCTCATCCTGCCCACCATCTTCCTCTACATGTTTATGATCGGAATCTGGAACTA
TCGTTACAGGTCAAGGCACCCACCACACATGGATACCAAGCTATCACAGGCTGAGTTTAC
GCACCCTGATGAGCTCGATGAGGAGTTTGACACATTCCCATCCAACAGACCGGCTGACAT
TGTGAGGTTGCGCTACGACAGGCTGAGGAGTGTCGGAGGTCGTGTGCAGACGGTGGTCGG
GGACCTTGCGACGCAAGGCGAGAGAGCTCATGCTCTGCTGAGCTGGAGGGACCCTCGCGC
CACCGCCATCTTCATATTCCTGTCCCTGGTCGTGGCCATCGTGCTGTATGTGACGCCGTT
CCAGGTTTTGCTGGTCATCACTATGCTCTACTTGCTGCGCCATCCCCGGTTCCGCAGCAG
GATGCCCTCTGTCCCGTTCAACTTCTACAGAAGATTGCCTGCCAAGTCCGATTCGCTCAT
TTGAGGCCAGAGCACCCGATGGAAGATAAAATGGGGGAACCCTGTAACATTGTCTCCCTC
TCTCATTCTGTTCCTTCTGGTAAGCTTCAGATCAGATGTGAATATACTTGGTGAGTTGAT
TAATTAGAGGCAGTTTGGTGGCCCTGTAATAAGGTGTCGGTTTTATATGTTTTACTGTCT
GCTTATAGTTAGGCAGATAGCGAAGGGAATGACCAGATAAGATCCCTTCATAGTTTTGGA
TGAACATTGTTGGCTCTGGGGTTTCTGGCGTAGAGCAGTGGGGTGGGGCACATGATCAGT
TCCATTGTGTTATGTTAAATGTATTGGTGCCAGTTTTGTTAATTTCGTGTTCTGTTGATC
ATGTCCCTGGCCGTGACCATGTTCTTTCTGTAGTAAGTATATCCATGTGTTGTTCCTATC
GCTTTCTTTAGAAATCTATTTATAATTTGTTCTGAGGCGTTCGCACTTTTTGCAGAGGGC
ATTGGGCAAAATGGACACAATTGACCTATAGACACAACTAATTCACATATCTATAATTTC
TAGGGATTGTTGTAGCATGACGTTTGTTGTAGCATAGTTGGTGGAACAATATTGGTTGAA
GTTCAGCATCGCATGGCACGGGAAATGTGCCGTGATCTTAGCGCGATCTGGTGTTACTCC
GTGCCTCCGTGGTTCGGTGCAGGATTGTCGCAGCGGTTGCTCAGTTACTGAATGTGCAGC
AATTTCCGTCTTGTAGGTGTTCGGTTTCTGATACGCACCGAAGGAACCACAAGAAAGGTT
GCGCCCCGCCCCTTTGAACCAGGAACTTTGTTGTGTTTCCTCGACAAACAATATAAACCA
TGGAACCCTTTTCTTGTCGGCAGAACAAAAGTATGAGACCGTTTGCGGGAAAACTGAACG
TGTGTGAATGCAGGACGGAGTATGTCGTCTGTAGTCTAAGTGGAGTCATCGGGTCATTTT
CCACGGCAGTTTTTGAGATTTATTGTAGTAGTGACGCAATGATTAGTGTGGCCTACAGAC
ATGGCTACACATTGCTGGAGGTACATGGCACGGTACTGTTCCTACCAGTGTTGAATCCAC
TATTCGCCAAGGGTCCCTGATTCTACAATTTGAGCAGAGCCGGAGGATAGAAAACGTTGC
GGCAATGTTCAACTCCACATGGATTTTAAGACGCGGGAAATGTTATGTAGTTGAACTCGA
TGTATTTTTTTTCATTGGCATTGCAGGTAAAGTAGTCCATATGGAAACTTCAGGTGGTTC
TTTATATAGTACTACTACAAATCAAACGAGTCAAGCACACAATAACGTAAGCAGAATCGT
CGTAAATTCCTATAAGATATTTTTTTCAAACGAAGGGCTCTAAAGCTCGGGAGAACATTT
AATTTGCAGGGCTCCAAAATGCTAAACTGTGTACAGATACATCCGTATCTATAAAAATCT
GTTGATAAATACTCCCTCTGTTCCAAAATATAAGACTTTTTAGGGATTTTACTAAGAGAC
TACATACGAAGCGAAATGAGTGAAGCTATGCTCTAAAATATGTCTATGTACATNNNTATG
TAGTTTATAATGCAATCTTTAAAAGGTCTTATATTTAGGAACGGAGGGAGTAGTATGGAT
CGAAGGAAGTAATATGTTATATTTACACACAAAAAATGACGTCATGGCTTGTCAATTTTA
ACATTTCCGAGCACAAAAAGAAAACCTACTTGTAAAGAGCAAACGCTATTCAGCTTTTAT
TTTAGGCAACAAAGGCTATTCAGTTTTTTCTTTGAGCAAAGTATAATCGAAGTCGCTCAC
ATACACGAGCATACATTCATTCTTACGAACGCACGCACACACATCGTACTCCTATGAACA
TCTTCGAGAGATTCAGCCGACACATCATCTTGAAACTAACGAAGTCGCCATAAACGCCTT
CGTAGTCGACGAAAACATCTCCTCCCACTAAACACACATCAACTGAAGACCTGAAATAAA
TCCAAAAAAATACAAGTAACAATGTCAAATCTAGAATTTGAACTCTGATGGGCAGCGGAT
ACCAAAGCCTTCCTAACCATCCAACCACGAATTGATGTATTAAAGGCTATTCAGCTGCGA
GGCCTCCGATTCAACACATGTTCGCCTAAAAATAGTTTGAGGCTTCACACAGGTTGGAGC
TTAATGGACCGGGCCCACTCTGGAGATGTATGGCTCCTTGAACGGTTTGTTTTCTCCTCC
CTTTTGCAGTCCATTTTCTCCGAAAACAGACACTTGATTTTTTTAATGCTGTTAAATACT
TTGCACGGTAGGCAAAATAAATTAGATCTGTATTCGGAAAATGTTCAGTGTGTGCTACAG
AAATCTTTAGAATATATTCTAAAAAGTTTGTTGTATATTAGACAAATGTTCAACATGTAT
TCGGAAAACGTTTAGTATGTGTTTGAAAAGTTCAGTTTTTATTTAAAAATTGTTTTCTTT
ATATTAAAAAACTTCACCATATATTTAGAATAAATAAATATATAATAAAAATAATTGATG
GTGTGTGTTTGAAAGATGTTAACCATATATGAAAAAAAGTTCAATGTGTACTAAAAAATG
GTGCATATTTTAAAAGTGCTCACCATATAATAGAAAAGGTTAATTGAATAGAAATATGAT
AATGAAAGTAAAAGTGCAAAGAAACCAAAAAACAAAAAGGAAAACATTAATAAAAATAAA
GAAGAAATAACATAATAACAAAGCAAAAGGAAAACATTGATAAAAAAGAACAAAATAACA
ACGGAAAGGGAAAAGACAAACAAAACAAAATAAAAACGGAAAATACTGAATAAAAATATA
ACATGAAAAAACAAAAGGATAGAAAAAATGATGCAGAAACGCTATGAAGGAAAACATTAA
CAGAATTGCCCAAGTGGGCTAGCCCAAATCACCGTGCATCAGGGCATTTCCAGCCGTTTG
GCCTTCCAGGGCCATTTTTTTCACCGGCAAGAGGTGAGCCGGCAGAAGTTTTGGGCCGTA
GGCTTGTTTATTTACAACCGTCCCCCATGCCATGTGTTTTCCTTGCTTCCGATTGATGCA
TGTCACTTGTTGGTCTTGCTCCATCGGTGGTCCCGCCACATTCACATGAGAGAAAAAGAG
AGGAGAGAGGAGAGAGAGATTCAATAATCCCATAGCCAGTCATGCAAAAGAGTAACGCCG
GCGACCCCAGGCGCCCCCCAGGGGGCTGGGTTCGGCATGGGTTCGCCGACGCTATTTTTG
GTCAAATCCGACGAAAAACAAGCTCTTGGGGACATGATTAGGGCATTTTTCTTTCGTTAG
CGTAAAAAAACATGGTCCTGAAGGGCTTGTTGGGGGCACGACTGAAGATGCTCTTAGGCG
TCAGGGCACCTATTTAACACCCATCCCTAAAAAACCCTATTCGACACCCATCCCTAAAAA
ACCCTATTCGACATTCACAGGGGTCAAGTAGGATTTCCATTCAGTTGCACAACATGAAAA
CCCATGTGTTGGATCTTTTTAAGTGAAACTAGGTTCTTTATTAAAACTCGATGATGTTCA
GAATACAAATGATGTGTGGTAATACTCTAGCCACACATGGCGACCAACTCGCAATGAAAC
TGATGCCTTAACTAAAGAACGTGCTTCGAAATTACACTCCCTATCACCCTATGCTTAAAC
AAGAAAGATGCACCTACAATTTCACTTCGCATGTGCTTGATTTTAGCTAGTATTGTTCAT
AAACTGATGCTGCCCCTTTGTTGATGTTCGTCACGACCTAAACGCAGTCTCGTGCAATTA
CCACCCGATGGATATTGAGATCCTTAGGTAGAGCCATTGCTATTACACACATGAGCCTCC
ACGGATGTAACATCGACGTGACCATCAAAGACAGCAGCCGAGCCTAAAAGTTTCCTCTCT
AATCCATTTTTGGATGTTTGGTAGAATGTATAGAGGAGGCATGAGTTCATACTAGCTTAA
CACAAATACACTAGAAGCATGCATGAAAAGGGGTGTTGAGATGAGCATGCATGGGGAGGG
AACAACTATGTTGAGATGAGAATGCAATCAAACACAACATAAACAATGACCATCATTGTC
CCTACAGATCATTGTTGCTCCACCCCGGTCATTTCACTTTTGCTGCACCCCGGTCCCTAC
CGCCATTGCTTCATTTCACTGCATGTGGCGGTAGGGTGTGTATGCCTACCGTCACAGCCG
ATCGCAGTAGAAAAAAGGTCAAATTTGAAAAAAAAACATAAACAAAGTCAGATGGGGCTA
AAGTTATCAAAAAGGTTCAAAACCGTGAATTTGTCCTTCACTGGGTAGGATAGACCACCA
TCTACATTGAATTTCGTTGCCGTTCCTGCTAGATCGTTGAGAGCATTTGTTTGTCTTTGA
CGTCCATCGATACGCTAACGATTTTATATTACGTTCATGGATGATGTGCATATCATTAGA
CGCAATGTACATTCACGCGTGAAATAAATCATGCACGCGCTGTCAGAAGAGCCTATTTAT
GTTCCTACATATGAGATCCTCGGATACGTCCAACCACACTTCACACAACAACCCAAGCTC
CATGCTTACCCCATAATTCTTCATAGTCTAAAAAATCAAAATCAAGTTAAAAAATAAGCT
CAATGACATTTGTGTTGGAATTATGCCCTAG