morexGenes - Barley RNA-seq Database

Contig contig_1579595

Source Contig contig_1579595

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1579595 (2244 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_1579595

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_18185	2	573 bp	AK252298.1	Available	Available	None

CDS Structure of MLOC_18185

Contig Sequence (2244 bp)

>contig_1579595 2244 assembly3_WGSMorex_rbca.fasta
AATCGAGACCTGTGGAGACGGCGCCCTTCTTGAGGTCCACGACGAAGATCTCCTCGTCAA
CGCCCATCTTCTGTAATCAGATCGAAGACCCGAGGGCACCAGGCTTCAGGCGGATCCCAC
GGGGGAAAACAGAGGGAGAGGGGGATGCCATACGTACCTTGGGCGAGATGTTGAGCTGGT
AGACGAAGCCGACCTTGTTGGCGATCTCCTTGCCGGCGTCGGTGGCGAGGTGGGCGCTCA
TCTGCTCCAGGAGCCTGGCCGCCTTGAGCTTGCTCCCCTCCATCGCGGCGCGCGAGAGTA
CAGATTCGGGGGCAGGGGAGGGACGTAGCAGATGGGGTTGGGATCTTGGGACTGTGGGAG
ACGATGCTCTCCTCCTCTATAATGGCTCCAACCACCGGGGAGGGGAGGGGAGGCGTGCAG
GTACGGGACACCTCGGCTCGGCTGGGGTGGCTCTGTTGTGGTGGTTAGTCGTTGGCGCCC
ATAACTTGCATTTGCTCCCAAGATTACAAGATTGGATTGCAGCAATCGGGACAGTTCATG
CAACTTGTAGTAACTGTCAAAAAAAAATCGCAGTTTGAGAATCGCAGGATACCGTGGCCG
TCGGAGCGACTGCAGGGCAACACGCCGTGCACGTAAGCCCTGAGCTACTGAGTTTCTTCT
CCGCCGTGTGATCTCGTGAGTTTGTATACTGTCTCTACCACCCCTATAAAAACAGGAGAG
GATAAATCCAACTAAAAATACATATTTTTTGCGGGGAACCAACTAACTAAAAATATTAGC
AGTTGATTATACATAATCTAATGGTCTAAAACAGAACTAACGAAGGATAAACAAAACGCT
AATCCCTCGCCACTTCGTCTCTATTAATCCCACCCACGAACCCCTCATCCCGGAACTCCC
TCCCTCACGCACACCGCACGCCTCCTTAACCCCCCTCCTCGGCTCCTCCCCCGCCCTCGC
CTCCTACTACTCCCTCATCTCGCGTCCACGTCGTCTTGCCGTCCTCCCGACGTTCCTCAG
AGCCGTTACAAACGAGAGTCGGATGACCCTGGGGGCGATTGGGTCATAGAGCGAGCTGTC
AAAGCCCCACACCACTTCACCGCCCCTTCATGGACTTTGTCAAGGGCCTCCCGCGTTCCT
CGGACGCCAACTCTATCTTGGTGGTGGTTGACAAGTTTTCGCGGTACGCTCACTTTGTCT
CCTTGTCGCACCCTTTCACCGCTTTCCAAGTGGCGTTGGCTTTCGTCGTCAACATCTACA
AGTTGCATGGCTTGCCGAAATCGATCATCTTCGATCGTGATCCAGTCTTCACCAGCACAC
TGTGGCAGGAGCTCTTTGTCTCACTCACACCAAGTTGCACATGAGTACCGCCCGACACCC
GCAGACGGGCGGCCAGACGGAGCGGGTTAATCAGTGCATGGGGACCATCCTTCGATGCTT
CGTCAACTCCTGCCCAAGCAAATGGAGCACCAGGATTCCTCTTGCGGAGTTCTGGTACAA
CAGGTCGCCTCACTCTGCTCTCGGGACAACCCCGTTCGAGGTGTTGTACGGTCATGCGCC
GCGGTTCTTCGGGATTGTGGATCCAATCACATGCACCTCCCTAGACCTGTCTCAATGGCT
GGCGGACAGAGTGTAAATGGAGGCGCTGGTTCGGCAACACCTGCTTCGTGCATGCCATTG
GATGAAGGACTTCGCGGACAAGCGTCATTCTGATCGCACCTTCGCTGTGGGTGATTGGTT
TTTTTTAAGCTTCAGCCGTATGTGCAACGCTCGGTGGTTACTCGCAACAACGAGAAACTG
GCCTTCCACTACTTTGGTCTGTTCAAGATTCTGTAGCGTATTGGCACAGTCGCCTACAAG
CTCCAACTACCGCGGGCCAGTACCATTCATCCTGTCTTCCATGTGTCCCAGCTTCGTCAG
ACACTTCCTCCCACAAAACAAGTCCAGCAACAGTAGTCGTCAATCACTGATGCAAGCCCC
GTGCCCGAAGAAATCCTAGCTGGCCGCCTTTGTCAGCGACAGAACAAGAGCGTACCCGAG
GTCTTGGTGCGCTGGATTGATCTGTTGGAAATATGCCCTANNNNNNNNNNNNNNNNNNNN
NNNATTATATTTCTTTGTTCATAATAATCCTTTATTATCNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTCTAGT
TGACTAGCTCTTTGATTAAAGATG