morexGenes - Barley RNA-seq Database

Contig contig_1579449

Source Contig contig_1579449

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1579449 (7451 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_1579449

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_18151	2	1669 bp	AK356386	Available	Available	None
MLOC_18150	1	210 bp	MLOC_18150.1	Available	Available	None
MLOC_18148	1	352 bp	MLOC_18148.1	Available	Available	None
MLOC_18149	1	738 bp	AK250674.1	Available	Available	None
MLOC_18147	1	556 bp	AK250674.1	Not available	Available	None

CDS Structure of MLOC_18151

CDS Structure of MLOC_18150

CDS Structure of MLOC_18148

CDS Structure of MLOC_18149

CDS Structure of MLOC_18147

Contig Sequence (7451 bp)

>contig_1579449 7451 assembly3_WGSMorex_rbca.fasta
ATTTATTCACGACAATGATCACACATATAGGCATCACATCCATAAGCAAGTAGACTAACT
CTTGCCTGCATCTACTACTATTACTCCATCCATCGACCGTTATCCGGCATGCGTCTAGAG
TATTAAGTAAAAATAGAGTAATGGTTGAAGCAAGATGACATGATGTAGACAAAGTAAACT
TAATTAATATGAATAAACCCCATCGTTTTACCTTTAATGGCAGCAATACAATACGTGTNA
TGTCCCTTTCTATCACTGGGATTGGGCACCACAAGATTGAACCCATTACGATGCACCACT
CCCGCTGAAGATAAATCAATCTAGTTAGCCAAACTATACCGATAGATCGAAAAGCATTAC
AAAGCTATCATAATCATGCATATAAGTATTCATAGAAGACTCTATATATTTTCATGAATA
ATCTGAACATAAACACATAATTCATTGGATCCCAACAAACAGACCCCAAAAGAGGATTAC
ATAAGATAGATCGCCGTGGAAACCGCAGTGATCTTTGCATTGAAGAACGCAGAGGGAGAT
ATAGCCATCTAGGTACTAACTATGGACCTGTAGGTCTATCGTAAACTACTTACATATCAC
CATGGGAGAAACAAGGTTGATNNNNNNNNCCTCCATGATTGATCCCCCCTCCGACAAGGC
ACCAAAATAATGCTCCAGATGGGAACATGGTGGGGAAAAGTATTTTGGGTGGCCCTATGA
TGTTTTCCCAGGAAATAGGATTTATAGAGGCGGAGTTAGGCTCGGAGGTTGCGAGAGGTG
GTCCCAAACTATTTGGACGCGCCCACCCTCCCTTGGGCGCGCCCTATTGTCTTGCCACCT
CTTCGTGAGGCCTGCGGCCTCCCTCCGAAGCTTTCAGGTCTTATTTTTCTAAAAAAATCA
CCAAAAAGTTTCGTTGTGTTTGGACTTAATTTGGTACTGTTTTCCTAAAAGGCGAAAAAC
ATGCAGAAAATAACAGCACACACTGAGCATTAGGTTAATAGGTTAGTTCTCAAAAATTAT
ACTCCCTCCATTCTGAAATATAAGGTGTATCAATTTTTCAAAAAGTCAAACCTTGTCTAT
GTTTGACCAACTATACAAAAAAATATATAAAAATTTACAATATCAAATATATTTCATGAT
GACTCTAGTGATAATGATTTGGTATTCTAGATATTGATATTTGTCTATAAACTTGGTCAA
AGTTAGAGATATTTGACTTTTTGCAGAAATAATACAACTTATATTTAGGAACGAAGGGAG
TATAAAGTATCATATAAATGCATCTAAAGTATACAAGATTGATAATACAATAGCATGGAA
CANNNNNNNNNNNNNGATACGTTGGAGACGTATTAGCGCCCTCGGGGGTAGGGCGTGCCC
TGATGTCTTGTGGCTCCCTCATGGCTCCGTCTGACCTAATTCCAGTGCTATAAATTCCTA
AATATTCTAAAACCCCTAGAGAGCCACCCGAAATAAATTTTCCGCCGCCGCAAGTATATG
TTCTTCCATGATCTCATCTTGAGGCCTTTTCCCATACTCTGTCGGAGGGAGAATCGATCA
CGGAGGGCTTCTACATCAACCTTGTTGTCTCCATGATGATGTGTGAGTAGTCTACCACAG
ACCTACATGTCCATAGTGGTTAGCTAGATGGCTTCTTCTTTCTCTTTGATCTTTAACACC
ATGTTCTCTTTGGAGATCTATTGATGTAATGTTTTTGTGCGGTGTGTTTGTTGAAATCCG
ATGAATAGTGGGTTTATGATCAGATTATTCATTGAAAGTAATTGAATCGTTTCTGAATTC
TTAATTGAATACTCTCTAGATTCCTTTATGTGTGATTTATATAGATATGTAATAGTTTCT
GATCTATAGATTTTCCTTGTCCAAGTTGATCTATCGATGTTGAGTGAAAGTAGTGGGTTC
AATCTTGCGGTGTCCTCACCGAGTGACATGAAGGGTAGTGAGGCATAATAGGTAGGGGCT
AAGAACGAGTTATAGATAAATCAACTCTTAATCATGCTAGGATTGTAAGGAACATGGATT
TAAGGTTACAAGATCAGGTATGCAAATGACAGGCTTAAATACTATCTAACATAACATAGC
CATTACATTGAAGGGTTTGAAATAAGGGAAATATGAGTTTGATTTACGCCTTAGTAGTAA
TAAAAAGAACGAAAAGGCGGAACCGCATCACCAACGTCAGCAAATAAGGAGGGACAAAAG
GCGGTGAGCAAACTAGATAATGATTTTTATTTGAAAAACATGGAACTATGAGTTTGATTT
TTATCGTACTAGCAATAATAACAATAAGAAAAAGATGTAATCCATTAACACCGACGCCGG
CAGATAAGGATGGAGAAACAACGGCTATCAAACAAGATAATGCATTTTTATTTGAAAAAT
AGGCAACTATGAGTTTGATTTTCACCTTACTATGAACAATAACAAAATAAAAAGATGGAA
ACGCATTAACACACATTAACACCAACATCAACAGATAAGGAGGGGCAGAAAGCGGTGAGC
AAACTAGATAAGGGTCGAGCCACGTGTGGACTTATACATATAGTCAAACCACATGTTTCT
TACTCCTACAAAAAGGGCAGAGCATTCATTTCCGCTCCAATATTACGTAACAAAAATTTA
GTGTTAGGATTGTATGTTTATGATCTATACCAGGATTTTGATGGAATCTGATGAAACTTT
CAACTATGTTGTTGCTACGATGTTATCAACAAATATCAATATGTAAGTAATTATAGCAAC
TTTAGCTGATAAGAAGAGACATGAGCAGTGAGCTACTATACAATGTGTGTTATTCCCACA
TATATCGAACTTATTCTTGAACTTATTCATCATAAAATAACATACTTTCATGCTCGGCTA
AAAATGTCGAGCATTCATTTTTTGCTCTGCCGCAATCCGTTACGAAACCGTCTATTTCAT
ATTTATCGGAAACGGGGGAGTTTTTGCTCCGTTTTCGCCCTTGTTGCGCAATGGATAAGG
GGACTAAGTGCATATTAATACAAGGGGCTACAAGATAAGGAGGGAACTGGTACAAGTACC
TGGCCAACTTGCAGCCTAGCCAGAGATCAAAAACAAAACTTGCAGCCTAGCCTTGGTTGC
CATCTCTTCTCCCCCTCCCTCCCCAACTACTCCCTCTCCTCCCACATACGCTTCTTCAAG
AGAAAAGAGCAGAGCAAACCCAGCACGACACCCTCATCTCCGACCAAGATCACTGCCGAG
CAGACCATCCGTCCAGCGCCGCCGATGGATTCGTCTCACCACAAGGTTCGTCTCTCTGCC
CGGCCGTCTTCTAATTGGAAGAAATAAAGATCTTCTTGCTCCGTGGCTGCTGATGTGTTC
CGGGCTTGTGCATCGTCCTCCTCAGGTGATCGGGGTCGCTCCGGCGGTGGCGGAGGGAGG
GAGGATGTGCTGTGTCGAATGCCGCACCACCACCACTCCCATGTGGCGCAGCGGGCCGAC
GGGGCCGAGGGTGAGTTCCCCACTTCTCCCCTCTTTTTCTTCCTTTCTTGTTTGTGCTTG
TGGCCTGTGTGGGAGGTGATCGGCCGTGTCAACCATGGCCTGATCACCACACTTCTCGCG
GTTCATACTGCGATCGTGTGATTGATTCTTGATTGTATCGTTCAAGCTGTTCGTAGAGCG
ATCATGCTAGGAATAATTAGCGTCTCTAGTTTTGGCAGAGTAAGATCATAAGATAGGGTG
GCGATTTTAATCCGGGTGTGTGTGTGTGGGAGAGGTAGATCATAAGATATGGCGGCGAAT
TTTATCAAAGAAAAAAAGATATGGTGATGATTGTTCTAATCAGAGTTTGGAGCTTTGGAT
AAAGTCCTACGGCAAAGGAAAAAAAAAAGAGAATCAGTGTGTACTCAGTTTTGATTCCAT
TTGGAGGTTAGGTGAGCTGTTCCTTGCAACAGTGCTAACCTCCAATCCCCCCTAATATTC
CCAAGTGGCATGGGATATTTAAAAAGGGTCCAGCTTTTCTCTGGTTGTTTTCTATTGGTT
GGGCCAATTCTTTAAGGGATATCCTTATCACCATGATAGTTTTTCACTTCATTGTGGCAC
TGAGCCATGCACCCATCAACCAGTAATATCTCTTTTTTCGCTGGCAAAACTGATATGTTT
CTCTGATCTGAAAAGTAACAATGGAGTTAGTGGCCCATACTGTGGTCCTGGTTTGGCAAA
AGAATTAAAACTGAATGTGCATTCAACATTTTTCATTTTGATTGTAGACGCTTTGCAACG
CCTGCGGGATCCGGTACAGGAAGAAGAGGAGGCAAGAGCTAGGTCTCGACAACAAGCAGC
AGAACCAGCAGGAGAACCAACAACAACAACAACATCAACAGCAGAACCAACAACAACAGC
ATCAACAACAACAAGAACAACAACAGCAACGAGAAGATAACGCAGAGGCAACAAGTGCAG
TAAAAGACAGCAGCAGCAGTAGCAACAGCAAAAGCAGCAACCTCCAAGTGGTGAAGAAAA
AAAGGAGGGTCTCAATGGGAGTGGAGGAGGCTGCATTCTTGCTCATGGCCTTGTCCTCCT
CATCTACACCCCCACTACTGCATGGCTGACGGACCCCCCCACCATTGGTGCGCCGTGTAC
ATACATACATGATATACAAGGCAGCCTAAACAGACCACCCAGTGATTCCAAACCAGTCAT
ACAGATTTCTTAGATGGGTTATCAAGATGGAGCAGCAGGGAAATGATGTCTCTTTCGGGT
TGATCATGTCGATGTGATGTGGGGGGGCTGGATTTTGTATTTGGATCCACCTGTGCCGTA
GGTCTTGGATCGTGTCAGTGTGTCGCATTCGAGACCGAAAGGGAAGATGCTCTGGGGGGG
AAATGTTTGCTCCGGAGAGGGAAAAAACTGGTCAGTGGCTGTATGTTGTTCGTCGTGGTA
GGCTCAACTGTGATTAGTCCAGAGTTTGTTTTAATTTTACCCCTGATTCATCTTGTTCCC
CTTTTTTCTGTTTATTTCAATGTATGTGTTTTGTTTCCATTGTTAGTTGAGAAGGATCAA
AAGCAAGCATTGCCATCCTTCATGTGTAATAAGGATCAAATCAATAAAAATGATTCATTC
GTTTCAATTCAATCAGTGCAAATCAAGACAAAAATTGCGTTTCTTACGCTGATTGATGCT
CTGATGAATCCAGGTTTTATTTGTCATTCTTGCAGATGCAAATGTAAAGCATATAGCACA
TACAAAGCAGGAAAACATATGCAGAAATAACCACCATGAAATTATACCTGCCATGCCAAA
GTGATAACCTTTGCTATTAGTTAGAGGCAGGCTCAGCATATACAGCGTTGGACAAAAGGA
AAGATCAATCCAACTATCACTTTATTCAGCCCTACTGCAGTCGAAGATGGTTTAGGCTAC
TGCTGCCTCTCCACCATGTATGATGGTCTGCTTCTTACACACATCTGATCAAAATTACAA
CCATCTAATCATCGCAAAAACTTCAGGCTATTCCTGCTTTATCTCACAAAATATAGTGGC
AACCTATGGTTTTGGGAGTGGTAATTCTCAGAGAGTTTTCATGTGTAGCATGGTTCCCCT
GAACAAGCATATGTGACAGGGTTGCGGTTTTATAACTGTAAAAACTCATTCCATCTGGCC
AGCCAGTTCAGCTTCCTCATCACCATCAAACTCCTGCTCTACTCCTTTCACCTGCCAAGT
GAAACATTGAAGTCTGTGAAGCCTGCCAACAGCGATGCATAGACCGAAGCTCTTTTAAGC
AAGTTGGCCATAAGAAGCAATAGCAATGTCAACAGCTTTCTTGAATAGTACTCCCTCCGT
CCAGAATTACTTGTCATAGAAATAAATGTATCTAGACGCATTTTAGATCTAGATACATCT
TTTTTTTCCATTTTGGCGACAAGTAATTCCGGACGTAGGGAGTACCAGATAACCGGCAAT
CTAACTATCAAATGGACAGCCCTTTTCAATGAACACACACACGCACAGTAGGAGCTGTTC
CAAGAAGTGGTAAACAAGGCACTGAATATCACCTCGGGCACATAGTGCATGAGCATGTTC
TCTATGCCAGATTTCAACGTGACTGATGAACTCGGGCAGCCACTGCAGGCACCTTGCATT
TTTAGCTTCACTATCCCTGTTTCTCTGAAAGGATAAGTATCACAGTGAGACGATGCAGCC
AAAATTTTGAGAATAAGCATCATACATGAACATCATGAGAGGTGAGGTACTAACGGCTCA
AATCCTCGGTATTCAATGTCACCACCATCATCTTGAACAGCCGGCCGAATGCGGGTCTCC
AACAATTCTTTTATCATAGCAACTATTTCTGAATCATCCTTTGGCATAGACAAATGTTGC
ATGGCAGATTTAGAATCTCAAGCACAGGTTTTCAATTATTCATGATGACAAATGTTATTT
TACTTCCCCACAGAAAACAAAAAATATTGTGTCAGTGCTACTGCTACCTACCTTCTTATC
ATACACAAGAATTAACAGTATGAACATTCTGGATTTAGTTTGCAATATATATTTGTAAAA
TTATAAGTTCATTAGCAATATTCAGAAGTATTGTGCTGGTGGTGTCAACCTTGATTCACA
ACGGGATAACTGCAGTGCTGAAGATAACCAGATGGCACGGATGTGGTGCTTAGGGCCCTG
TCTCCTAATATGATTGGACTTACTAGACCTCTCCTACTACACCTGGATTCTTCCATAATT
CTATGTTTTCCTAATAGACTCTTAGTATTTTTCTCTCAAGGACTTGTGTCTTATCTTGTT
ATTGTATTCTTACATCTTGCATAAAACCAATACTGTTTGTACTTCACACACTAGATGATC
ACTTTTGCAAGAAGTGGTATGACTGGAAAGCCAAAAAGTTTTGCCAACAGTATCCTTTTC
TTATAACTGTAGTTTAAGCTTTTTGTATGGCACCAGAAATGAGCATGCTGCAGAAGAACA
AAGCTATAGAAACAAGCACGAAATAGAAAGAATGTGCATGAATACCTCATGAATTGCTGT
GTCCATAGCAGCTGCGGTGTTTGAGTCCAGAAAAAGTGGCTGTCCAGATGAGTAAAAATC
CATTATCGCAGCAAAGACCTCAGGCTTAAGATAATCCCATGAAGTCTCGTCAGATTTTGT
CACAGTTACAAAATCAGATCCAAAGAATACTCTTGTAACTCCTGCATAGAAATTGCATCC
AGTCAATATCATGACCAAATGGAACATTTCACTTAGAAAATTTGGAACCAATTTCAGATG
TTGTGCTGTGAAATATGTACTATTACACATTTAGGCCCTGTTTGGAACCATAATAGATTA
TGATAATCTAGATTATGAAGATAGATTATATAATCTGGTTTATAAAAATAATCTGGGTGG
ACATGTTTGGAGGCCAGATTATATAAACTNNNATCCAGGTTTTACATTGCATAATGACAT
GTCTGTCCTCT