morexGenes - Barley RNA-seq Database

Contig contig_1579404

Source Contig contig_1579404

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1579404 (2794 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_1579404

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_18143	2	1380 bp	MLOC_18143.1	Available	Available	None

CDS Structure of MLOC_18143

Contig Sequence (2794 bp)

>contig_1579404 2794 assembly3_WGSMorex_rbca.fasta
TGATGTGATTCCATTATCAAATGACAANNNNNNNNNNNNNNNNNNNNNNCTTGACCATCT
TTGATCAACAAGCTGGTCCTTTAGAGGCTCACTAGGGACAGTGTGTTGTCTATGTACCTA
TACATGTATTTGAATTTCCAATCAATANNNNNNNNNNNNNNNNNNNNNNTGATTATCATG
AACAAGTAAATATAGAAATAACTATTTATTATTGCCTATAGGGCATATTTCCAACAATGT
TTACATGGGCAAAGAAAGAGAACCGCATGGTCCATAAAAATGAACCACAACACAATATTG
GATGAACTGCTTTAATAAAAGCATATACATGTTCATGGAAAACAACATGAATCATTCATG
AAAAAAATATCCATGTGTTCGCAAACTGTTCGCATGAGCTGGCCCAACAAACTGCATCAT
TCCTTTTCAATTTACTACAACCAAGACCCTGCATCTTGTTAGAACAATTGTCCTCCAACA
CAAAGATTAAATTATAATCAAGTTAGTTTCTTTTGCAGTGCACTGCCACACACATCTAGA
GAACTGCAAAAACAATATTCACAAGCTCTATAGCCACTTAGCCAAACTGCAAAGACAGTA
GTCACAACCTCTATAGCTCTGGAGAACCAACAAGTGTTGATGTTGTCGAACCACACACGT
GAGCAAACACATAACAGCACAATTGTGAACGTTCTAGTGAATCTCACAGCCAACCGTGCT
CCACACGATGCGCATCCGAGCAACATCTATCGAGCATGAGAACTGCACATGAAAATCACG
AGTAGAATGCACGATGGGCGGATTTGGCTGACGGCGTCCTTAACGGAAGATAAGTCAACA
CACTACAGCAGTTGATCCATAAATATCCTTGCATACTATAAATATTCAACTCAATAAAAA
ATAATAAATACTTATCACCCAATGACTATACACTATAGTACTCCGAAATAACTCAGGCAT
CTCGGTGCACTTTCGCCAGAAGCCGGGGAACGACAGAAGGAGGAGCAGCATCAAGCGCAT
GACAAGAAGTCTACGATGCTGGAGCAGGAGTCATAGCAGCAAGAACAACTGCAAAATCAA
GTGCAAATTAAGCACAACTAATCAATCAATCGGAGAGAGGACAGGGCGAAGCGGTACAAG
AATAACACATGAGTCAGTCGACCAACCAATCAAATCTACTTAGCACACATACCATCCGTT
GAGGCTCTTGTCGTGGAGGTTATCGGTCGCGGACATTAACTGAGAAGGCAGGGGATCCAT
CGCCGAGTCGGTCTATCTGCACCCATGGCTGCCGTGGGGAGCCAATCCCCATCGCCTCAA
TCTGGCCTCCCTCCACCGTGGGAGGCCTGGATCCGGCGGCATGGCAGCGCACCAGGGTCG
ACAAGGCCTACATCTCGTGGCTGTTTGGTGGCTTGTGGAGCGATGGCTCGCCGACGAGTG
GAGAATGCCGCAGGCCGGATAGTGGCACAAGAAGAAGCCCACGGGAGGTAGGTGGTGGGG
GATAAAAAGGTGGGTGGGTGGGTACGATAAAATGGGATTGGGCGACTGGGTTAAGGAGGT
TGATCAGAGAAGAAAAGAGGAGGCGCCGCCAGATCCATGTGGCTCGCGGGAGGCGCCGCT
GGGATCGCGGGAGGACGGAGGTGGGGAGTGGGTGTGTAGATGGAGATGGGTGAGTGGGTG
TGTCTTTTCTACCTTGCAGTTTTGTCTACTGGTGCTGGTTGGTGTGTTATGAGAATAAGG
GCCTTAACGTGTTTGTACAATAGACCTACCCTATATATATAACACTATTTATCACCGAGG
ATGTAGAATGAGTTATTCTTCATCTAAGGTAATCTTATGATTGTTTCATAAATAAATTAC
ATTTTATGTATATTTTACATTATGTTTCTACGTTTGTAATTTTACGTAGCATAAACTATT
TTTTATGGTGATTTAATATTTTCTTACGTTCTCTTTTTAGGTATGAAGTAAGAAAAAAAT
ACGAACCATAAAAATATGGTGCATTGATGGGGAAAAGGGGTGGTGAAGAATAAATATTCC
TCACCGAGAGTGACGAATAGCGTGACGCTATATATGAAAAATTTTATCTACCACCGATGG
TAGTTACCATCACTTGAGTATGTACGCGTAGTATGTAGAGAGAGAGAGGAAGAGAAAGAA
AGGGAGGGAGGGAGNNNNNNNNNGAGGGGGAGATGGAGAGAGAGAGAGCACAACAAAGCA
GAGAGAACTCTGTTCATAAACAAAACATTGCACATTAGTACGATCCACAAATAATCAATT
GCCCATGGGAGAACTACAACCAAAAATAAATAGAAGAAAAAAGGACCGCAAGACACAACC
CATAACCCACAACCTAAGACGATTTGATTCTCCTTGTCCACATGAGTCGCCATACTTATC
TCGGGACTCATCAACTCTATACGCCTAAGTTTTAATCTTCGGGGACTTCAACTCCCGCTT
CGGTCGGACAATCCACCAGCATGGTTTGTTGACGGCACGAGCAGCCATGTTGGCGATTTG
TACGTGACAAGCAAATAACGCCAACTATCATGTGTTAGTCGATCGAGTAATGCCTCGAGT
CGAGGTGACGAATGCCGCGGAAGCCAGTCGAGTTCTTAGATTGGCGGCTCAACGCCATCG
ACGCAGATCCTGATGACGGGAGGGCTAACTGTTGGAAATATGCCCTAGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCTATTTCAAGATAATTGTTTATTATCTATNCTATAATTGT
ATTAAATGAAAGCATAAATGCATGTGTGGATATA