morexGenes - Barley RNA-seq Database

Contig contig_1579361

Source Contig contig_1579361

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1579361 (5160 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_1579361

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_18137	11	2102 bp	MLOC_18137.3	Available	Available	LOC_Os08g44560.1, FRAME:-3, EVALUE:4e-163, 13108.m04846 protein expressed protein
MLOC_18134	1	692 bp	MLOC_18134.1	Available	Available	LOC_Os04g42910.1, FRAME:-3, EVALUE:1e-28, 13104.m04247 protein expressed protein

CDS Structure of MLOC_18137

CDS Structure of MLOC_18134

Contig Sequence (5160 bp)

>contig_1579361 5160 assembly3_WGSMorex_rbca.fasta
CCATGGAGCTCCATGGATGTGTGGATATCCAATGGGTTTGGGCATGGGCACAATTTGTGC
CCATGGATACTTTGGTGGATGGGCAGAGGGTAGGAATATGGGTCATGGGTTGGATTTGGA
CCAGCTCCACCCGCTCCAAACCCAACCCATTGCCATCTCTATACTTGAGCGGTCGTATTA
TTATCCCTATATTGCCCCTTTTCAAACTTAAGCACACTCATGGGTCGCAAGAAGAACAAA
CGACAAACTGAGCGTCAAAAACTTTCCAGGTTATGAACGCAGTCAGTTACACAGATTTGC
CAAGCAAGGGCATAACAACAGATAGACTGCGAATGGTACATGGCATTACTCATAAAACAA
CATTAAGCATCATAGAAATTTGTAAAACCAAGGCCCAGCCAAGGAGAGTCTCTCCTCTAG
AATTAGTTCCGTTGGGCAGGCTACAGAAATCTAACAGTGCTCTGCGTCTAGTTCTCAATT
TCTAAATAGAAAATAAGATAATTTAGATCCGGATTTTATACAATGGACGCTTGCGGATGG
CATCCAAAACCAGAACAAGAACAGACAACCAGGAGCGCTGATAGCAGGTATCACTGCTTG
AAGCGCTGCAAGAACAAAGATTTATTCAGTTAACTGTTGCATTTCCAACAACAGCTACTC
CCAATGGACCACATAAAGGTTTGGTTTAACTCACATCATCGGGTCCGCGAGCATCCTTAA
ATTGCTCCGACACCTCCTCCCTCACTTGTTTAGCTGAAGATACAGAAGCAAAAGTTGTCG
GCTTTTTAGCACAAATGAGCCATTAAAATCAAAACCATAGTTTCACATAATGTGATAAAC
AATGAAACACAAATGTGCATAAATAATATCTTCATACTGTATAGCATCTTCATAACAGGA
AAATAAACTAGACTCAATACATAAACTGCAAGTGGTGTAGTATGAATGATATATGACACA
TTTTCTACCACAAACAAAATGATTTTACATAACATTCAGACAAGATATTCTCAAACCAAT
AATCACCAAAATTGGTTAAACATTAAATGAGCAACACTCAAGCATTAAGAAATCGGTATA
GTGACCCTACCTTTGGTTGAGAGATTCTCCAAAGTCTTGTTGGTCCTCACAGCAAACCTC
TGGAAGGCACGGCTGCACAGTAAAAACAAACAGCTTGCTCAGAACAAACAGCACCAGGGC
AAGTAAAACAGAAACTAACGGATATCAAGGGAAACACATGGTGTCTAAACAAAGCGGTTA
ATAATACCCCCGGGTGGTTACTGGACATCAGAGTAAAATATAACAAGATGGCACAAGAAT
AAGCTCCACCTCATCCAAAGCATAGGAAACAAACTCAGATACCAGCTCAAGGACATCAAT
CAATCATAATTTTAAAAGAAATGTCTAAAAAATCATTTACAGAGTGAGATTCAGAAGTAA
GTCAATCAGCACAGATCCACCAAAGCGGGCACTAAGACTGGGGCGACATATGAAATCATC
ATCCTCTTGGACATTCATTGCTGACACTAAGGCATGTTTAATACAATGGTTATAAGCAGC
AGAAGTTTAAGGCAGATCGGCCAAATGAATTATTGGCTAAGTGCCACACCTCGCATGGAT
TTGTTCACATACGTAGATATCAGCAACATGCAAGAGAGTTGTACCTAAATAAAGCAGATA
CAAAAACATCTTACTCAGAAAGAACAGCGACAGGGCAGGTAAAACAGAAACCAAGAACAA
CGGAAACTGTGGTATCTCAACAAAGCAGATAAAAATATTTCAGAAGGCTGCAAGAGTGTG
GTTCCTGATTTAACAAGACGGCACAAGATAAACTCAACAAGCTCCGCCTCATCCAAAGTA
CAGGGCACAAACTCACACCAACTCGTGATGAGCTAAGGCAATCATAATTTTAAAATAAAA
AATCAAAACAATTGATTTACAGAGTCAGATGCAGAAGTATGTCAATCAGCACATATCAGC
TAGGAGTGCAAGACTATTTTGTTCAAGTAATCACAGTTTGGTCATCTGAACTATGCACTT
GTAATTATCATTCGAGCTTGCAGACCGATAGAAGGAAGTACAAAAACAAATAGAGTTCGG
CCTCATTGATAATTATGCTTTCCTGAAGAGAGTTTTCTTTTGAGAGAGAGAGATTCCTGA
AGAGAGTTGAGGGACAAGATAATCTATCATTTTAGTTTAATCATCGGCCACACAAACAAA
CAAAAGGGCAAACAAAGAACATAATGTGATAGCAGGACTAAGAATTTGGGTAGTCAGCAA
GGCAAACAAATGTCAGTTACCACGAACAAGACCAAATATCAATCTTCACCATCCTTCATG
GCAATTCTGACAATTTTCTTGAACAGCGGCAAAAGAGAAAGTGTTCATTCTCCAGAAAAG
AGGTGTGTCCAAGGTCATCAGATAGGGGCAAAATACTCCCTCCGTCTCATAATATAAGAC
GTTTTAAAAAGCTACCATAGCTTGCAAAAGCGTCATATATTGTGGGACGAAGGGAATACT
ATTTTTGTTCTAATAAGGGACAACAAAACCATAAATATACGTCAGACAAAATTAAGACAT
AATATACCAAAAACCTAGTGCAAATGCTACATGTACACTCAGTCCATTAGATGTTCTTTG
AATCGTCTTATCATTCCCGCAAGAATCATTAAGGTCTGCTAGAACACATCTTCATTGTCA
TGAAAAATCAAATTGATTACCAGCTCATAATCGTCAAACAAGAGAAAGGACACAAACACA
TACACTAACTGTTCGGCAAACAGGGAATGAAACACAACACACAAATGTAATGCAAATGTT
GCATAACAACTCAGTCCCTTAGATGTTCTTTGAACTGTGCAATCATTTCCGCAAGAATCA
TTACAGGTCTGTAAGAACTCAATCACTGCTACCATGAATACATCGTTTCAATGAAACCAT
TAAACAAAATGAGCCAATCAAAGCAAATAGCTCTAGCAACAGAATTCACATGACACCTCA
ACTGGACCCCATTGGTTTAATTCAATATAGGGGAAACTATCCACCAGAATCCAGATGGCC
ATTCCATATGAAGCTAACAAATTTCTAAAGAAACAAAATTGAGGATGAATCCAGATGCCC
TTGCTTCTTGGGAAATCTCTATGCCGACTCAGTCCCTTAGATGTTCTTTGAATCAAGCGA
TCATGCTCGCAAGAACCATTACAGGTCTGCAAATGCTCACACCATCGCTTTCAACTTGTG
GGATTTGGGAGATTTCAGACCAAAGTAAAAAAAAATTAACCTTTTTCCTAACATGATTTA
AACCCAAATCCCAAAAATATGAACAGACCGCACGCATCCTAGAAAAAATCACTACCGGTA
GCATGTACGTATGTATGAGCTGTGCTGCACCATGCGTCATGGGGAAACCCTACGAGGGCA
GATGAACTGGCAAGCCCAAGATACAACGAGATGATGTGGCTTCAAGGGAACGAATCCGCT
GGGAACCGACCGGGGAGCCGATCCTCCCAAGGATCAGATGACGAAGCGCTACCAATCCGC
ATGACATCAATCAAACCAAATCAACGACGAAACCCTCGCGAGAGGACGACGGGTAGATCT
AACCTAAGTTCTGGGGGGAGGGGTGGAGGGAAGGGGGAGGCAAGCATACTTGTTTGCGAG
GCCCTCCACGAGGAACTCGTTGACGACGTAGCTCAGCGCCCTGCTGAAGATGCCGCCGCC
GGCCATGGCGGAATTGTGGAGCGGGGAAACTTCGCGAAGGGGGCGGAGGCAGGCGACTGG
TCAATTGGAACGGCGATGTGATGCCACACTCGTAAGAATGGCAATTTTAACCAAACAAGG
TGCCAAATGGGCCGTTCCTGGCGTGTTAACCCAATTGCCCACTTGCCCGGTCTTTTTTTC
TTTTTTAGCATATAGTATAATCGAAGTCGTTCACATACATAAGCGTACACTCACCCCTAT
AAACGCACGCACGCACATCCTATCTCTATGAGCACCTTCGAAAGATTAAGCCGGCACATC
ATCTTGAGATTGACGAAGTCGTCACTAACGCCTTCGTTGTTAACGGAAACGTCTCCTCCC
ACTGAAAGCACATCGTCGGAAGACCTGGAATAAATTCAGGAAAATGCAAGCACCAACGTC
AAGTCTCGGACTTAAACTCTTATAGACAGGGGATACCACAGTCCTCCTAACCATCCAACC
ATGGATTGGTTTGTCTTATCCGGTCCTTCTGGGTCTACCCCACGTGTTTATGATGGGCAC
GCCTATATCTCGCCATCACCTAGTCTGCCTTGAGAGTAACTAGTTAAGGAGTACTTTCTT
AAAAGCCTTTTAACCATCACTTTCTATGTCGTCACTCAGCGCGTTTTCAACCGACACCAC
ATGTCATGTTTAGAACGTTTCATTTAGATTTTTTATTTTTTCGCACGCGTTTTTGGTTTT
TTAGATTGGAGTTTTGCAGGGTTTTTTGGTGTTCCAGTTTTTCACCGGTCTTTCTTAGCT
TTTGAACGAAAAAAAAATCAATTATTATTGCATGAAAAAATGTGTTTTCTGTTTTTTTTT
CTCGCGAGCGGCACGGGTTTGTTTTCGCGTGAGACACGATTTCGCATGCGCTCTCACGTA
AAAACACGTGTTTTCTGGTTTTTTCGTGGGAGTCATGATTTTGCTTCCGTGAGAGGCACG
GTTTTGTCTTCGCAAGAGCCTCTCAGAAAGGGAAAAACGTGTTTTCCATTTTTTTCCTGC
GCAAGAGAGGCACGGTCGTGCCTCTTGGAAACGAAAAAAATGCGTTTTTTTATTTTTCTG
TTGTGAGAGACACGGTTTTTTCGTGAAAAAAAGTTTCATCAAAACCTATCACACATGGAT
CTAGTTTTGAAGATTTTGATGGAAGAAACCAACGGTAAAAACGGTTCAAGATTTGGACGC
ATGGTTTAGGAGATAAATATGTTTTGAAAATACGAATATATGAAAAAGGGAAACCTCCTA
GGTTATGATAAGTGTCACGCATGCAGTGCATCACTTGTCGCAACCTTGAGAGGTGGGTGT
GGTCTTTCAAAGATATACTCTTCGGTTAATGATTTTGGTCTGGCTTCGGACTCGCTGAAG
GGGCGAGCGAGCTGGCCGTCCACGAGCGCTGGAGGCTGCTATTTCTTGAGTTTGCGTTGG