Map Locations of contig_1579073 (9086 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1579073

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_18052 1 1105 bp None Available Available None
MLOC_18053 3 1170 bp AK369926 Available Available None
MLOC_18054 1 818 bp None Available Available None





CDS Structure of MLOC_18052






CDS Structure of MLOC_18053






CDS Structure of MLOC_18054






Contig Sequence (9086 bp)

>contig_1579073 9086 assembly3_WGSMorex_rbca.fasta
GGCGCCACCCGGAGGACGTCGCCGCTGAGAACGCCTACTGGGCGGAGAGGACGGCAAGGC
GTCGCGCGGAGTGGCAGGACAGGCGTGTGCGCAAACTACTCGCTGTATCGCAGTGTGGGG
TCGTCGAAGCCGGTTTGCCGTCCATCTTCACCTGCGACGATGAACGTTGGGAGGACGCGT
TTCTATCTAGCTCCGACAGCACCCATAGTGACGACTCGGAGTAGTTTTTTATATGTATAT
ATGCTAGTTTTAATATCTATGTCCTGAACTAGTTTTATTATCTTTGTGTTGAACTAGTTT
TATCTATATGTAAAATATATTATTTATATTATCTATATGTAAAATATATTATCTATATTT
ATCTATGTGTTTTTATCTATACGACAACAATGAACTATATGCGTGTTGGACTTTGGGTGT
TGGAGCGCCGCACGCGCGTGCGACGCTAAATTTGCAGCGGCTGCTGGAGCGCCGCACGCG
CGCTAAATATGCTGCGACCGCTGGAGCCGACGTTCGTTGGCGCCCTAAAAAAAGCTAACC
GCGCGCTGTATATAAGTTTTTTGGGCGCCGGTCGAAGCGCGCCTGTTGGAGATGCTCTAA
AAGCGCAAGTAGGAAACAAATCACATCAATTAAAAGAGGGGAGGAGCCTCCGTAGCATGC
GGCCAATACGCGTGTTAGTAAAATTGGGCATGCACGTCATGGAGCGAGCCTCACGTAATT
ATAGGAGGCAAATGACTAAGCAATTTAATCAGGTAAGTTGTGCGTGAGCGCGTGACGCTT
TGGATTCAGTTAGCTTTAATTCAGCAGGATAATCTGCCCTCCTTTTTAACAGCACCAAAC
GTATTCATGTATGGAAGAGCTGGCGCCGCACTTGCCAGCCTTTTGGTGAGCTTTTTCCGT
GCCCTCTGCGCACCAACAATTGGTGAAAAACTGAAAATAGCTTGGGGACATCCAGGGCGC
AATGGGCGAGCCAAAGTTTTGGCCTCAGCAAACGGCAGCCAAATCTTATGGGCAAGCCTA
TTTTTTGTGTGATCACTGTATGTTGTAGACCAAACACACCCTTAGCCTCTCTCGTCATTC
AGCCAGACCTGTTTGATGGTCATAATTCATTCAGCCACACCTCTTTGATGGTCATAATTC
AGGTTTTGTTTGGATGCTTTAGGCAATATGCACCGTGTGACTGTATCTTAGCTGGGCTAG
CTGCTTCTTCAGCATTCAGCCTCCCTTGTTTGATGGTCATAGTTCACAATTTGTTTGGTT
CAATAGCCAAGTCGAGCTCGCTCTATCTTAGCTAGGCTAGCTAGCCATTGTTAGCCAATT
CATCTTTTCCGGGGATGATGTTTTGTTAATTTACACTTGACAATGGGCAACTTCCAACTG
TCCATTCGTTTGGTTAAAAACTGAGGTTATGTTTGGGTCTCTCCCAAACTTGCTAGGAAA
GGCGTTTGGTATCAGTATCATAATAGAAGTCCCACTTTGCTCAGCAATATAGGAAGCAAC
TAATTCCAACGAGAAGAAGAGGGTTACTGATCTGGCCTTGCATTAGTATATAGTGGAACC
AGAACAGGGACAATGCCCTTCTTGATCTAATGAAAGATGGAGGAAGATGACGGTTAAGGC
AAACAAAGAAAAAGTCCTGAGGCTCTTGCATGAATCTTATTAGAAAGGTGTGATTGTATT
GGAGAGAAGGTGCTAATAGAGACAGAGAGTGAACCATAGATAAAAAATCTTGTAGCTGAG
ATTGCATCAGCAAGTTTTTTACAGTTTGAAACGCCCAGTCTAGCCAGCCAAGCCTATAAG
AGATCTTTGCTTTAGGCCTTGAGAATTTAGGATCAGAACGCTCCCTCATTTTTTATGGCA
GGCTTAGTAGTTATTATGGTAGAACACTTGCTTATGTCTGTTGGTATTTATTTATGGTAT
CATTTAAATCTGCCTCTCTTCATTTATCTTAGTTTCTAGTGATCTAAAACGTCTTATATT
AGTTTGCAGAGGGAGTACTTTCTTTTACATTGTTTTGATGCAGCATCATGTCAGCGTTAA
ATATATTACTGCAGTAGTTTAACTTTAAACTCCTTATTTTGAAGAATGACACTAATCTTT
TCTTGCTTCACTTATCACCACAGTTCTCAAACAGAGCAACACACTGCCAGAGAAGACACT
ACCAGCTCCTATCCCTTTGTCAGACCAACCATCAACTAATTCACCTTTAACCGGGTAATC
TTCAGAAACTTCACTAGTAAAAATTCATCTTTATGAAAGGGTCCTTGTTTCTAATGCTTG
CTTGTCATTTCTTGTAGTTCTGCGTCGAGGTTGTCTTCCCTACAAAAGCTTCCCCATCAT
TTTCTGAATTCAATCCGAACAAGAAAGTCCCTTGCCAAGAAGGTTCTTGGCTGTTCCACC
CTGCTTGATTATTTAGAGTAGTTTTATACTTTCGTGGTTAATAACTTGCAGTACTTGTGC
TGTAGGACATTGCAAGCATAAACAAGTGGAGGTTTATGAAGCTAAAGGAACACATGCAAG
GAGATATCGATGTTGAAAATGAAGCATATGATAGATACACACAGAATATTGGATTGCTGG
AGGAAACTTTCTATCTCAAAGAAGATTCTGGTGGTGAACATGAAACTGAAGCAACTAACT
CAGAAGAAATGATGGAAATAATGGTCTCTGAGGCAAAGGTGAGGTTAAAGTCTGATTGCG
CAAATGCAGCTGGCTTTAAAGAGAGGATTGCCACTGTATTGGACCAGAAGCTGAAGAAAC
TGCAAGAGAGGAACAGTGCCTACGAGGATGACAACTCCTCTGACCAAAATCTAGATGACC
ATAAGAAGCTGGTGAAGTTGAACATAAAACAGCAAACAGCGAGAAACGCGAAAACAAACG
AGCTGCTTGGTAAGTTGACAAAAGCACAGAGTGAGGATGATTTGAAGCCTTGCCTCAATA
TCATGGCGCAGCTGTTCGGAAAGGAGACTGCTTCCTCCTCCATGAGCACATCAAACAAGT
CAAGTGACCAAGAATCAACCCCCGCCACTGCGCCCTCTTATTCATTTCCGAAGCTCACAA
CTAGGGTGGAGGTAGACGAGAACATGATGTCTAAGATCAATGAGTTTTCTTCTTTGAGTC
AGGTTGTTCAGCTATAATGTGGGACCTGGACTGGTCCTATGCCTCCAAACCCCAGAGGCA
TGTCGTGAATACAAAATGTGGACTGGTTTTTTGCTGTCTGATAACGTCAAAACGTAACCA
GTACTGTTTATCTATCGTTTCTGTACTGTCTTGAAAAATGCGATGAACTGTTTCCAATGA
AGTAAAAAAATCTACCATGGGAGGAATGAAGTTTTTTTAACCTGTGGCACACTTTATTCA
AATCAAATCATGGTTACATCATTAACAAGTTCAGCTAGGGTAAACTGCGGAGGGTCGTGA
TCCCGTAACTTGACCGGCTGTAGATGCTCCTCTAAGCGACTAAGGTAGTAATAGTATTTT
TTTCTTCTTGTCTTTGGAAACTAAACTACATCAAGAGGGGAATAATTGTATTTTATCTGT
TTCTCTAACCTAGAAACATGTTGAACACGTTGAAGATTTACACTTGTTTCTTGAAGTCAA
TGTGGTAAATATGAAGGATGATATATTCAGCCCTTAAAGACGTGATCATTTTGCGTAGAG
CATCTACAGCCGGACGCAAATCCGCTTCCTTAGCCTAAAGCACCTACAGTCGGACGCAAA
TCTGCTCCCTTTTACATCCGCGGAAGCATTCAGACGGCCTTTTAAATTTCACTATTCGCA
CCTACATGTCTCATATCCGGACTCTTAAAACCATGCAAAACCATGCATACCGATCACACA
AACCATTGTCGAACGTAATAACAAATATTGATCAAAGATAAATAGTGTTTACATAAAGTT
TATTTGAAGTGCACAATCATTTATCAATTTTTTTGATTTTCATTGTGGGTCCACATATGC
TCCACCAGATCATTGAGTAGTTGGGCGTGCATCTGATGATCTCGGAGATTCTGATGTATG
TGCAGAAAGTTCATATGCTGAGCTGCATCTTGATCTTTCGGGATTTCAACTTGTTCTCGA
GGTGCTTCAAAACCATTGGTTTGGGCTACTCCATCACCCTCATCCTCGACAATCATATTA
TGCAAAATAACACAACATGTCATTAGCTGCTATAAAGTTTTTGATTCCCACATCATTGCA
GCCCCACGGACAATTCCCCAACGAGTTTGCAACACTCGGAATGCCCTCTGCACATCCTTC
CTAGTTGCTTCTTGCATCTTTGCGAAGTGCTTTTGTTTGTTGCCCTGTGGTTCGCATATG
GTCTTCACAAATGCAGCCCACTAAGGATATATGCCATCGACAAGATAGTATCCCATATTG
TAGTCTCGGTCGTTGACAGTGTAGCTGCACGACGGTGATTTCCCATTGCAAAGCCTCTTG
AACACCGGAGATCGCTGAAGCACGTTGATGTCGTTGTGAGAACCCCACATTCTAAAGAAA
GCATGCCAAATCCATAAATCATGTGATGCCACCGCTTCTAGTATGATGGTATGGCCTCTT
TGGTGTGACTTTGATACATTCCTTGCAAACCTTTGGGGCACTTCTTCCACTGACAATGCA
TGCAATCAATTCATCCGAGCATTCTCGAAAACCCTCCAGCCTCTCCAATAGCCAACAACT
TCTCCGTGTCCTGCACATTTGGTTCTCTCAGATACTCTGCTCCAAACGCCTCGACCACAA
CATGAGCAAACTTGACAATAGTCTTCATGCATGTGCTCTCCCCCATCCTGAACATCTCAC
CAACGACATCTGCCGCAGTACCAAGTGCAAGCATTCTCAGAGAAACCATGAACTTCTGCT
TGACAGAGAAAGAGAGTTGACCACAACAGTTCCTTGTGAGATTAAAGTAGTCATCGCGTG
CTTCCACTCCATCCATAATGCTAAAAAAAAATGGTTTTCGCATGCGAAAACGGCGAGGAA
ACCATGGATCATGCAGGAAAGTTGGGTTTGGAGCAAAGTAATCCTTTTGCAGTAACTTTG
CTCCGGATACCCTATCCCGATTGGTCACTCTTCTCCCTTTGATTGAGCCCTTGAAATTGA
GAGTATGCTCCACTTGCTGCTCCATTTCCTCTTGCATGCTCATGAGCATGATCATGTCCA
ATTCTTCGTCCAAATCCGAGGAATCGAAGAACTCATCTTGAATCATTTGATCAAGCTCTG
TCGGTCCATACTCCTCGCCGGACGAAGCATCAGAATCCATCATTTTCCCTAAAATTTGAC
AAAAATTTGAGCTGACAATGTGTCGAACACATCCAACACAAGGCAGAGCCATAGAGTTGT
CGGACATACTACGGTGTCTTCCGGGCCGACGACGACGTCCTCCACAGCGAGGACGGGACA
AAAGACTTCTCTACCGGAGTTGGCGGGGCAGATGCTAGGAACAATAGCGGAGCGTGCGCT
ACAGTGGAGCTGCGAGACGGACGGCGCGGAGTAGGAAGAAGAGAGCAAAGAGCAAATGTG
ATCCGGCAGTTCTGCTAGGTGGATTCACATCCACCCTATATTTGGGCTGGATATGAGGGT
TGCGAGTCAATCCGGGTGTTTGAGGATCCCGGTTGGGTCGAAATTTCATGACCTGTTTGT
GACCGGCCTGCGTGCCCTAGCGTTTGAGAAGGGTATGATGCATCCGGACGTAGATGCTCT
TACGTAGGTTCTGAGAACAATGGTTAATCTTCTTGCTAGGACTCTAGACATATATCAATT
CATGATAATTTCGGGCATCCCCAAATTTTACGCTAAATTGATGGCTCCTAGACTGTCTCT
GCGCATGGCCGAACTGGTGGAGATCAACCAATCAACTCCTACTCATGGTCGATCAATTCA
TGACCAATCGGTTGCGAGGAAATTGCATAAGAACAAGGTGAAAGGAGTGTTATTTATATT
GGATATATCATGTGCCTTTGACCCCATTGCTTGGCTCTTACTCTTCAAAGTTTTACGCGC
GAAAGGTTTCCAAAATGTCTAGAGATCTTAGGTAGCCACTTTACTCGCGGTAGCAGCTCT
TGAGTTGTCGTCAACGGCTGTGTGGCCCCAAGTTCATGCATGCTCAAGGGTTCCGTCAAG
GTGACCCTATATCGCCACTTCTATTCATAATTGTCATGAATGTTCTCACTATAATGATAA
TAAAAGCTGGATGCACTCATGTGCAGCGATTGTTGATTTACACAAATGATGTGGTTCTCT
TCGTGAGGCCTAACATATCGGACATGAGCTTCGTTAGAGAAACTCTCAACATTTTTGGCA
CGACTTCATGCCTTCGAGTCAACTTTGCAAAATTTTCTGCTATTATGATTCGATGAGAGG
AGAGGGACAAACACAAAGTCAAAATAGCCTTTCCGTATGGAATCTTTTCCTTGCAAGTAC
CTTGAACTTCAACTTTCTATCAAGCAGTTAACTCGCTCAGAGTGGCGTCCAATTATTGAC
GAAGTTCTGAATTTCCTGTTTGGTTCGTAGAAAGGTCTGGTGACAATGGCTGACAGATTG
TTTTTTGTAAACAAGGTTGTGAGGGGAGGCTTATTCATGGCTTACCAGTGGAGGATGCTC
TAAAGTGGGCTCTCAAGAGAGTGGATAAGGGATACAAAGGGTTCTTTTGAGAGGCCGCAA
AAGGGATACATGGAGGCAAGTGCTTAGTTTCATGGTATAGGGCGTGTCATCCTAAGCAAT
TGGAGGCATAGGCATCATTGATCTTAGGAAGGAAGGGATCACATTATGATTACACTGGGC
TTGGTTGCAATGCACTAAGGATACGAGGCCATGGAAGGGGCCTCCCCTTGCCATCGATCC
ACATGTTAAGTGACTTTGAACAACCTTGTGCGCTGGGGTGTGGGATGAGGTGACCAAATC
CTTTTCTAGAAGGATTGATGTCTCGACGGTGCTACTGTCCTAAGATCACACCAATTGTGG
TTGCTCATATAAAAGCTCAAATGATCATCCGTAGCAAGTCAATGATGGTGTGCACTTGAA
CCAATGGGTGTGTGACATCAGAGGTGAGTTATCCACTAAAAGAATGGTGATCTATTGGCT
GGGCATGATGATCAATCAACCCGGAAGTGTAACGAACAAGGAATTCACACAAGGACATCG
GACTATCAATGCTTTTCCACGCTGGTGTGGCGATAGCCTACACTCGCGCAGTTTGGAAGT
GTTGGCCCCCCTGTCCTACAAAATCTTCACGTGGTTCGCTCTTAAGTACATGTTATGGAA
CTCGATCCGGGAAATGAGACATGACCTATAATACTAGCCCTCTACGTTCCATACCTATGA
CAAGGATGAAGACATGGTTGATCATATCAAGCTCCGATGTGTTTCATGCAACACGTCTGA
TTCTACAAGGTCTTGGGTTTAAATAAGTTCACTCTATCAAGGTTGAGGCCCAGAGGCAAC
ATCAATCTTTGCTCATGGTGCGCCGCCGATGGATGCACGTGGAAGAAGATTACAATACCC
TAAGAATTTGGATGTAATCTTCTTTCCCTAGATGAATGTGTTTGTAAGGACTTGAGATAC
TTAATATATGGTCTTATGCCATTTCGCAAAAGACCAATTTTGCTAAATGAAAACATCCAA
CCTGATTAGTGAGGATCAAATCCAAATGTAATATAGGTGAAGAAATTCGAAAAGGAGGAT
CAACCACCAATTTCTGCATCGATTAAATCACACTGTGATATCTTATTGATTATTCAACAA
TGTCTAGCAAACCCACCATTGATGCAGAAAGAACCAAATCAAAAATAAAAATAAAAACCA
AAGAGCATCCAAAAAGATCCGACTCACTTTCAAATCTTCACAAACCTACCACACACTCTA
TGACAAGTGATTTAATAACATACAAAATGCCAATCTTAGAGAGCTTTTAGGAAGGGGTCG
CCATCGGCATACTAAAGCTGATGGATCTAACCAAAGGTTGCACTTAGTAGTTCCATCCAC
AACGCCAAATTTCAAGCCAACAAGTTCAGCAAGGTTACATCAAGGTACATGTGACATCCT
CAACTGTTGCTATAGTAACCTCTGTAATTAAACTACAATAAACCTATGCAAATGATGCCA
CATCACCGTGATTTCTATTGTTAATCTCGCGTTAGTTCAAACGATTCGAATTAAAATTTA
AAATAAAGTCAAGCGATAAAAGTTTTCAAATACAAATATAAAAATGTTTGATGTTTGTCA
AATAATACTTAGTAAGTTGTCCTTTAAGAATTATTAAATTTAGGGGGATTTATTACACTA
AAATAAAATAAGTCTAAAACTGTAAATGGATAAAAGAAAACAGAAAATAAATAAAAGAAA
AAGGAAAAGAAAACTCCCAGCCCAACTCAGCCAACCAGCCTAGCCGACCACCCCGGCCCA
ACACCCCCCACAGCCCACCTACACTACCTCGGGTATAAAACCCCTACCCCAAACCCTAGC
CCTCACACCACTCCCTACTCCTTCTCGTGCGCCGCCAGAAGCTCCTGGCCACGAGGGGAT
CCCTCGCTCGCTCCCAACGCCCTCCCCACGACCCCCTTGAGCCCCGCAGCGCACCCACCC
TCGCTCACCCCCATCCCACATCGCGCTCGCTTCTCCCTGGTTCCCTCGCGAGCTGTGCCC
TCGTTCCCATCATCCCTTTCCAAGCACCCCTCGTCGCCCCCGGTTCCCAGCGCACCACCA
GGGCCTCCCCGTCGCCCTCTCTCCCTTCCTGCCTCACCTGCACTGGCCCCATCACCTCCC
CACACCGGCGCCTCCCACCATCGAGCCCCTCACCAGCGCCCCTCCGGCCACCTCCTCCGG
GAGGCCGAAGCCCTGCCTCCACTGGTCGCCGCACGCCGGATCCGACACCCCTGCGCCTCC
TCCTCGCCGGATCCACCCCGACCGACCTCCTCCACCTCGTCGGCCAGCGACCACCGTCGG
GCCACCTGCGGCTCCTCTCAACGGCTTCACGAGCCTCCGTTGACGAGACCACACCGCCTC
CTCCGCCCCTCCCCGTGAACTCTGGCTACACCGGGCCTTCCCGTCAACGCCAGTGAGCCC
TCCATTCGGGCTCCTCCCTCCCCTTC