Contig Data
morexGenes
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Map Locations of contig_1578813 (5856 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_1578813

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_17989 1 1274 bp MLOC_17989.1 Available Available LOC_Os04g32920.5, FRAME:-3, EVALUE:0.0, 13104.m03166 protein potassium transporter, putative, expressed





CDS Structure of MLOC_17989






Contig Sequence (5856 bp)

>contig_1578813 5856 assembly3_WGSMorex_rbca.fasta
AAAGTTTGATCATCTTTGATGCTGCAAATTTCAGATTTTTTTTATTTTGTTTTTTTTTTC
TTTTGATTTTACTGTTCATAGNNGGTGCCTAGGCACCCGGGTGCTATCACACCTTTCTCA
TTTATATATCTTTCTTTACCAGCAAGTAGTGCTACATATATTACTGCATGAAGCAAAACT
GTAGTCAGACTTAATTTGTCTATTTATTTATTTATTTATTATACCTGGGATAGATCTATA
GAAGGTGTTTGCCACGTTCTCCGGGAATTTCCTCAGGTAAGCGGCCTGCCCGATGTAACA
CAGTCCCACCCCCGGGAACAAGATAAAGTTGAAGCTGATCTGTGAGATGCATGGTTCTGT
TTTAGCTTGTAGCTACGGGGAAAAATGCTTACTTCAGAAAGAAATGTATATGTAAAACAA
TGAAGTACCTGAACAGCCCTGATGTTGAAATGTCCTAGGTCAGCAAACATACCTTCTGTG
CCTGTCATTTGAATTCATTTCAGATTAAGCATTATAGCCTTGCAGGCAGGCAGGCAGGCA
GCACATGATCTTTTCAGTTAGAAAGATTGGTAGCCCAATTAATTACCTGTGACACACAAG
ATCACTCCACCAAGTGAAACCCATGCCTCCTTACCATTCCTTTGGAAGTACTGTACTATA
TATATCGGATTGAAGGCCCGTAGAACACCAATATCATGGACGACGAGGTTGTACATCCCA
ATACCAGCAATCAGAAGGAACCACACTGAGATGACTGGAGCAAATGTGTAGCCGACCTTG
TCGGTCCCGAAACGCTGGACCGAGAAGAGCATGAATAGGATCGCCACCGAGATGAGGACC
ACTTGTGCTGTTCAAATAACCATGCAAGGCCGTTAGATCAACGTGTGATGGACTGACAAG
AAATAAGCAACCGTTTTCTTTTCAACTGAAAGATTTAGAAATGTGCGGGGACGGGTTTTT
TGCAAGACAATTGAAGCAAAATATTGACCAAATTACTATAATCCTTTCTTTGATCACGTA
CTTTGAGTCAGGCTCGGCGCTTTTTCTCTGATCCCACCCACTGCAGACAGCACTGCCATG
AACAAAATATGTGTGTTAGTATTAGTACTCCTTTTCTTTGGAATAAACCCTGGTACTACT
ACTCTGTATATTGGCTACCTACCAGGAGCAGAACATAATTAAATTAATAGCGTTGACTAG
CTAGTTAGCCAGCTCTCTTTAATACATGATTGATTGATTGATTACCAGAAATTGCAGGCG
TCAGGGTTCCATCGCCGATCACCATGGATGTGCCGAGGATGGTGAGGGTGAAGAGTGCGA
TCTTGGCTGCCTTGCTAGATTCCAGCTTCTGCTTGGCCCACTGCGCCCTCCTCAGCTGCG
AGTTTGGGGCTTCTATCCGGTAATTCGACACGGCAGCATCCTCGGCCTGTTGGTCCGGTA
TCATCCTGATCTTCGCATACCGTGATATCAGCGAGTAAAGCGCAAACGTGCCACCTACAG
CCATCAACAGTACATGGTGCGCAATTTAGCTAGTTGTCACCGTTTCCTATGCTGGATAGT
GCAAATCAGGATGCAGTTCAGCTTCAGCTTTATATATCCTGCCCAAATTTGAGTGAACTA
ATGGGCTTACCATCTCCGTTGTCATTTGCGTAGAGCACGATGAAGACGTACTTGAGCATG
GGTATGACGATGAGGGTGTAGATGATAAGCGACAGGACGCCCAGGAGGTCGTCGTTGTTC
TTGATGCCGTCGGGGAAGGTGCTGGAGTAGACGTAGAGCGGCGACGTCCCGATGTCGCCG
TAGATGATGCCGACGCTCTGGAAAGCGAGGCTCAGCGTCCGGACCCAGCTCACCTGCATA
TATCATTCATGCGTCGCCCAAAGGAAATTAAGTAGGGGGTACATGAATAGATGCAACATT
GCTGCCTGCAACTGCAACTGACATGACCGTCGATTTGCAGGAGAAGGACACATGATATAC
ATACCCGGGAGCCATGGTGATTGGAATGGGACACCTTCTCTGCATCACCCCACAGCGAGT
CGTGGCGCTTGAGCGGGGCAGGTACTGTCTCCGTGCTCTGCGGCTCCTCCGCCTGGGTCG
ACATCTCCTTCAGTCAGTGCTGCAGCTTGCAGTTTTGCTCCGAGGCACGCAGGCTGCCGG
AGAAGATCTGCAGCTGCAGGTAGCTCGTGTTGGAGGAGGAAAATGGGGATCGGAGGGCTT
GTTTAAATAGTGCGGCACGCAGACGCAGTGCAGTGTGGTGCAGATTTGAGCCAGCACATG
AGGTTGCTCCTGAGAGTTGACATGAAACTGTCGTTTGCTTGAGAGGTGGCACTGACCTTG
CACCCATGTGTTATATTATCATACCTGGCTAATCATTGTTGTTATTTTAATCAAGCCTTA
TGATATCACGCAGAAGGAAACGTATGTATAGAGCATATACCTCTCTATCATGGTACTTGG
TACTTAGTACTTGAAAGTCAATGGTGTTTCATTCACGCGGATAAAGGCATCCATACCTGT
TCTGAGGTTGTGCATATTTGTGCCGCTCTGGTATTGCCATCAGAAGGAGATTGGTAAGCA
AATGTTGCCTAGCGGACAGAGCATATAACTTATACTCCCTCCGTAAACTAATATNNNNNN
NNTTAGAACACTACTTTAGTAATCTAGACATTCTTATATTAGTTTACAGAGAGAGTAGAT
ATTTAGGTTCGCTCGTGATGGAACCAACCAATCATACCAGGGTTTAAAGTCCTTGATTTG
ACAATTGTTGTCACACCTGATACTGCCGTATCGCTGGACTTGTGTGGGTGAGAGAGAGAG
AGAAAGTGTGTGTTGTACTGCCCGTGGGCCACTTGTGGCAGTGAGTGGGTTACGTGTGCG
TGCTTGGAGGGGCAAAATTCACTGTTTTGACCTTTTATCGAAAGTTAAGCCGGATACGAT
CCTGGTTGGATTTTTTTTTCGGATCTGACCCTTTTGCTACCGCTAAAACCTTTGGCGGTA
GGGTATAACAACCTACCGTCGAGGCTCTTGACGGTAAGAAAATAGCATACCGTCGATGAG
GCTGGCGGTAGCGCATGTGATCCTATCGCCAAGGATTTCGACGATAGGCACACGCGCGCA
CTGTGTCCATAACTTACAGATTTTTTAGGTAGGCGTGCGACCCTATCGCCAGGGTCCTTG
ACGGTAGGTTGCTATACCCTACTGCCAAGGGCTTTGGCGGTAGCAAACGAGTTAGGCCTG
AATTTTCCCCCAGCCAGGGTCAGATCCGGCTTAACTTTCGGTAAAAAATCAAAACAGTGA
ATTTTACCGCCTGGGGGCGATGTAAGCGTGTGTACTTAATCCATCTCCCTTTGTCGAGGG
TATGCAATGTGAAAAGTCTAATCTGAGTGCATTCCCTTTCTCCGTCTTTTGTCAATCCTA
CTTCTCCCTCACCTTCGATCCATTTTCTCACCCCCAATTTCCTTGTCGATCTGGATTACT
CCGGCCTCGGTCGTGATAGTTGCTCGAATATTTCTGTATTTATTTCAGGTTGTTTGACGA
TGTTCGTTAAGTGAGTATATGTGTTAGACTTCATTCGTTCTTAAATATATTTTAAAAAAA
ATCACTACGAATTACATGCGAATATATATAGATATATTTTAGATTACATATTTACTAATT
TTGTTTTGTATGTAATTCCTTAGTCCCATAATATAAAAGCGTTTCTAACACCACACTAGT
GTAAAAACACTTTTATATTATGAAACGAAGGGAGTAGTTTGTAACAAAATCTCTAAAAGG
ATATATATTAAGAACAGAAGGAGTATATATGAGTGTTTGCGTTTATGCTATTTAAAGAAA
AAGCAAATCAAGCCCCGGATTGCGGTTGCTGAAATTGTTTGCATCTTTTGACTTTCCCCC
AAAGAAAAACAAATATCAATCATTGATGCTATTTTAATCGGAGAAGAGAACAGTTCTGCA
AGGTAGGTCATTTAGGAGTATTTCTTTGATATATTGTTTAGCGGCTGGGGTACCGGTAGT
ATTTTACAGTGACGTGTGTGCATCCGGAGTAAGCGACAAATAATGTCTTTACATAACCGA
GTGAGGTACGGTGTATCCGAATAAATTGCACGAAATCATCACATTAAAAGTTAGGGTAGC
AAAAAATACTACTTCCTCTGAAATATATGTTGTTGTTGGAGCAGTTAAACTTCAACTATT
CCAACGACATATATCACGACATATATTTCGGTACAGAGAAAATAGTTTACATTTCTTTTG
ACAGAAAACACATGTTTAACGTAACCTTTTGGTAAATAACATTGATCGGCGGATTAGGCT
CGTTTGAGCGTATTTATGACAAGTGGGTCCATTTTTTGTTGACGTGGCATAACGTTCATG
CTAGATGGGTTTTCATTTGAATTTACAAAACAATCCCTAGAGTTTTATATAGCGCCCTAA
ATCAAAAAGAAAAGGCACCCCCTGACATGTGCATAAAACCTGTAGTTGGCTTGGGGAGGC
GCCACACAAGCTCTCCGTGCAGCCGAGGCTCTCGTTGCTAGCTTGGGGAAGCGCACATGG
AGGCTTGGGGCGGTGGATGGGCCTCGTCGGTGGATGGATGCGGTGCGAGAAGGAAGATGA
TGAAAGAGGCAAGCTCAGATTTGGATCTCAGCGACCTAGAGCGAGCCCTTGCACGCGCGC
GTCGTTCCACTGCATCGGCCGCCACAGTGGCTTCTAGAGTGTCACCTCGTTCCTCCCCCA
CTCTTCTTCCCCAACGATGGCCATGAGCTCCCTCCTCGGAGCCGAGTTTGATTCATCGCC
ATAGTGATCCGGTGAGAAGGGGGTGCTGCCTTGTAGGCTCCTTGACGACGCCCCAACACT
ACATTGTTGTGTCGCCTCATGGGCAAGCCGACACACGATCATTGTCTTGGGTACCGCCTG
AGAAATTTGGATATCGGGCGGTAACCGCGTTTCTCGCCGCCCCAAGAGAAATATCTATCC
CGAGCAAATAATTCTGAATTCTTTTGAATATTTTGAATTTAAACACTCAAAGTATACTAA
ATAGGGGGTGTTTCCCAAATGAAACAACACCCTTACCGTGGCCTAGTGGTAACCATCTAT
TATATGTGTCTAGAGGTAGCTTGTTCGAATCCAACATCTCCAGTTTTTTGTTTATTTTTC
AGAATGGGTAAGTAGAAAATGGGCGTATGCAAGGCCTAGTTTGTGGTAACCTCTTTGGTA
GTTGGTGAGGTTACCAACACACTTCCGCACAACCGTACCACACATCATAAGCAGAAGAGA
GCATAACCAGAGCTTCAACTACTTAACAGAATAGTTCACAACAGTTCAATGGATAAATCA
TAGTTCAAGCAGACTCAATAGTACCCTAGTCCCTGGCGGCAAAGGCTTCGTCGTGCTTCC
CGCACTTGTTGACCACCTCAATGCCATCGTCGTCGAAGATGATGACCTTGAGGGTGTCGG
GAGTCAGGAGCTTGAACGTCACCATGTAGCCGGTATTGATCTGATGAACGGTAGTGAAGG
TGGCCCAACCCTAATCTAGGGTCACCCTGCCGTTCATTAGCATGACCGTCACCCTCTAGG
AGCAGCTGGTGTTGTTCATCAGCTTGAACTCCGCCGGCACCGCGGCGAAGTGCTTGGTGA
AGTCTAGGGGCATGGGCATGCACTCAAGCTTCGGTGCAAGGATGACCTTGCAGAAGTGAG
TTGAGCCACCCTCCTCATGGTAGTGGTCGTAGTTGTGGCGCTTGTTGTTGGGGGGATCCT
CCATGCGTTCGTCGTCGCCAACCGTTGGCGTCTTTGGTTCTTCCTCGGTGGTGGGCGGCA
ACACCACCTCCGGCATTGGATGAACCGCATCCTTGC