morexGenes - Barley RNA-seq Database

Contig contig_1578645

Source Contig contig_1578645

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_1578645 (2364 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_1578645

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_17942	1	1761 bp	AK362066	Available	Available	None

CDS Structure of MLOC_17942

Contig Sequence (2364 bp)

>contig_1578645 2364 assembly3_WGSMorex_rbca.fasta
CGGCGTCTGGTTTGGGCCAACAGAGCAGGCAATAAACTTCAAGCCTAAATAAAGGACGAA
TGCGTTTATATCGAGGTTCACGTTTGATGACATAGGATATTTTCATATATACACGAGTGC
AGCCGAGCAATCGCCGTCAAGTTAGACATCTGGGTCGCTTTCAGTCATGCGCGTAGCTTA
GCTAGTAGCCTTAACTAAACTTGACAATGGACCATCATTCATCTTTACAGACGGCAGAAA
TGTATATATATTTTCACACAATTTGGGCTTCCTCAAACTGCCCAGACCCTAATCTACAGA
AAACACCAGCATTGCAACATAAAACTTGACAAAAAGAAAGACATGATATCTTCAGTATAT
ACTGCCCCTGCCATGCTATCTTCCATGCAGCTGTGTCATTGACACGGTACCAATGGAGTG
GCTCCTCTCGTTCTCGCTTGATTTGCTCAACTCGAGAGCACGGCCTCGGAGCATCAGGGT
GGGCGCCCTCGGCATGGGAAGGCTGGAGCTGTCACTGCTCAACATCAGGATGACCGCGGG
GACGTCCGGACGCTCTTGGGCATGATCTTGCACGCATAACAATGCAATGTGGATGCACCT
CAAGACTTGTCGAATCGAGCATGATGGTTTTATCAACGGGTCGATCATTTCCTCGCCCTT
GTCTTCATTCCATTGTTGCCATGCCTGGAAAATGGTTGCGAGCTCAAGCCACGAAGAGAC
AAATAAACGAAATGTCAGGATGAGTGCGGCATATGGAGTACGCGTGCGCTTACATATCCC
GCGATGTTTAGGGAGTCCTGCTGGCCATGAAAGCTGACAGCCCTCTTCCCTGTGATGATC
TCCAAGATCAGAACTCCAAAGCTATAGACATCCGACTTGACGGAGAAAATGCCTTCCATG
GCATACTCAGGAGACATGTAGCCGCTGCAAAAAGAAGATCCAATTTAACGTAATGCAGCA
GTAATATTCCAGTCATCATTAGGTCTATCTGAAATGCACGTACAATGTTCCAACGACACG
GTTTGTGTTGAACTGGTTTTCATCCCCTCCAAAGATCCTTGCCATTCCGAAATCTGATAT
TTTGGGGTTCATGTCTGTGTCTAGGAGAATGTTGCTGGCCTTGAGATCACGATGAACAAT
ACGTAGCCTTGAGTCCCGGTGGAGATACAGCAGCCCTCGAGCAATACCTTCAATGATATC
AAACCGTGTCCTCCAGTCTAGGAGACCTCGCTTTTCAGGATCTGTTCGTCCACAGTAATT
ACAACCCCATCAGTATATTTGTTCATCTAGAGAAATGAGGATGAATGGAAATGATACGTA
CTAAAGATAAATGCGTCGAGGCTCTTGTTAGGCATGTACTCATAAACCAAGATCTTTTCT
TCTCCCTGTATACAGCAAGCTAATAGTCTGACAAGATTCCGGTGCTGCAACTTCGCAATC
AGTATGACCTCATTCTTGAACTCCTCATGGCCTTGACCTGAGTTCTTACAAAGCCTCTTC
ACAGCTACTTCTTCTCCACCAGGTAATGTTCCCTGAAGTGATTCATGGTATTAATTTGCA
TTAAGCCAAGTACAGTATAATACCGGCGCACACAAAAAACAAGTACAATACAAAGATTCA
TGACACTCATACCATATAAACCGGGCCAAATCCACCTTCCCCAAGCTTGTTGGATTCACT
GAAACTACCGGTAGCAGCTTTAATGCGGTCCAGGGAGAGTACTTTGAGTTCATGACTTTT
TCCGTCCTCCGATTCATCGTCGAAAGGAATCGAATGTGAGATATCCAGCATGCCAGCACT
TTGCTGAGATCTCGTAGATGAACGTCTTGACCTCCAACTTCTGTGCACTGCATCTGCCCC
AGAATACCAGTTAGCACTATACTTGCCTCCAAGAGTCCATTCGTATTAGAAACCGAGACT
AATAACTACGGGTAACAAACCGTTCACAGCTAGATCCAATTTAGCAGTGTTGACAACAGC
TTGGCAGCTAAAGTCCTTTTTCCGCGCAACGCCTATCAAAGTCTAGATTTCACCTGGGAC
TCTAAAGCCAAACAAATTACAGATGACACCCTTGCCTGCTAATTTGGACAAAATACCTCT
TAGACCAGTCAAATGCGGCCAGCGGTTTTGGCATAACAAGGTGTCACATGAACCGTGATC
ACCCTTACATGTCTACTGTTAAGAATTGGTTAGTATCTAGGTAGAAATAAATAATCTGTA
CTGATTTGTACAGATCAGGATCGGCTGATTTGATCACGATCAAATCATGATTGATACTCC
CTCTGTTCCTAAATATAATTCTTTTTAGAGGTTCCACTACGGACTACATACGGATGTATA
TAGACATACTTTAGAGTGTAGGTT