morexGenes - Barley RNA-seq Database

Contig contig_1578638

Source Contig contig_1578638

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1578638 (2612 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_1578638

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_17939	1	456 bp	AK251541.1	Available	Available	None

CDS Structure of MLOC_17939

Contig Sequence (2612 bp)

>contig_1578638 2612 assembly3_WGSMorex_rbca.fasta
GGGAGAGGGGAGGGGAGGCGGGGGAGGCGACGGAGTGTGAGGGGGGGGGGGGGGGTAGGG
ATTAATCGGCGAATCGACCATTTAACTGAATTTATCGGTAACCCATTTATCAGGGGGTTA
ACTTGGGCCATATCTATATATTCTAGGCTATATAGCAACACATAATGTACAAAATGTCTA
AATATGCAATCCTAGGCTACATAGTAACAAGGAAAAGTGTTCGATGGTCTGATGATGTTG
CAGCCGATCTGGAAGGCCATAAACCTTCATGAGCGGGAGCAGAAACAGATCCAATGGGAA
TGGAAGGGAGCGACCTACCTAATGTGTGGCTGTGAAAAGTAGGGAGGGAAGGGGCCAGTT
TTGGGCAAAATGGCAAGCTGTTAATTGGCCAGACCGATAACTCGGCCTGACAGCTGATAA
ATCGGCTTGGCAGACAGATTAACTGGACCTACCAGTTAATTGCTCGAATAACACATTCCC
TTACCGGGAGGGGTCCGAACAGCAGTTAATCGACCATATCGGCAGTTAACTGGGCGATAT
TTGGAACAATGCATATGACAGGGAAGCCATTGTGAGGCTGTAAGGCCTAGTTCTAGAAGA
ATCAAGGACACGCTATTACGGTGCTACCCTTGCAAAACCTGAAACCGAGTTCCACAAGAC
CTATACAACATCTAGTTGTTCAAGCTACGCCACATTTACAGTGGGACAGCAAATATTCCT
GTTCTAGCATGTTCCACGCGTTCCCAGCAGCACCAAAATTGCATCAGGCATTCTAGTATC
ACAATTCAATGATTGCCTCTCACAGTCACAGCAGGACACTACCACCGAATTAAGTCAATG
CATAATCAGAACTAGATGGCCACCTTCCAAGCATCTAATTGCATCAAAAACTACATTTGA
GCCTCAATTTCTAACAAAACTGGGCCAATGCCTTGGGTCTAAAATTATGACATGCTACAT
AACCGGATCCAGCACAAGAAAATTGAACAAATTAAACGCAAGGGGCGCAGTAAGGAAAAG
AGCACGCACAGTATGAAGCAGAAGCCGCAGGGGGTCTTGGTGTTCTTGTCGAGGCCCATG
ATGATCTTTTTTATCTCGCCGGCGCGGGAGAATAGCTCGTAGGCCTGCTCCTCCGTGGTG
TAGAAGGACATGTTCCCCACGTACACCGTCAGCGACGCCAGCAGCGCCCCCTCAAACTCC
TCCTGTGTCCCAGGGAACCGCCGGTCCCTGTACACCGACAGCTTGCTCGGGTCCTGGAAG
GGCAGAGGCGCGGGCCGCGTGAGCGGAGAGTAAGAGGGGGTCGGATGCTTGGTTAGGGTT
CGGAGGGATCCATACCTTGAAAAGGGACGCCATTGTTGCGGCGGCCGCGCGAGGTCGACG
GCGCTTGTCGAGGGTTTTGAGTCGAGCAAAGGGTTGCGGGTGGGGAATTTGATGGTCTTG
TGGGGAGTTCTCCTGTTGCGCCAATCGCCGATTCCCTTTCGCTCACGAATAAATACCGAG
TGTAATGACGAACGATGAAAGAGTAAATTTCCAGATCCCATTATTTTCCATTGAATTTCT
GTCCAAAAGAACCACTAACCAAGTTAAATTGTCGGAAAAGATCACCCGCAGCGTCGATTT
GCAGAAAGGACCCCACTTCTCGTGGCGGCACGCGCGCCAGGCGACGCGTGTCACCTGACG
TCATCACGTGAGGCGGCTCGGGCCTGCCGCAACCGCACGAGGCGGCCAGGAGGGAATCCC
CTTGCACCGAATGACGCCACGGAACGGGCCGCAGCACGCGGGCCCTGCCACCACCGCGTC
ACGCGGCCGGCACTGTAATCTGCCGCCGAAAGTGGCGCTGGCTGGCGCTCATTTTGAGGT
TATCAGGTGCGGATTTCCACGCAGGGAATCTGTGAGATGTTCTTTTTTCCCGCCTAATTT
TCAGCTGTGTTCACGCCTTTTTTTCTAATAAATTTCGCCTCTTCACGTCATATTTTCCGC
CTACACATCCGCCCGAGCCTATAAAAGAAAGGTACTGAAACACTCTTCACCATCATCCAG
CCGCACTTCGCCTCAGTATGTCACACTTCTTTCGTAGTCAGTATGAGTTTACCTTGCTCG
TATCAAAGCATTAGGCCTAGGAAAATGAAGAGTGCGAGCTTGCCTCGGGGGTGGAAGTAC
TGTGTTGTTGGTGTAGCGTTTTCTGCAAGGTGAAGGAGGTGACAAATTTTTCAGATTGGT
TGGGCATGAAGTTTTTCATGTGTCCCAATGTGACGCTCTCGATTTAATCGTACGCTAATC
ATANNNNNNNNNNNNTACGATCAAACTCAAGGACTTACGGGAAGATATCACNNNNNNNNN
NNAGACACAAATAAAAACATACAAGCTTTATATTACAAGCCAGCGACCTCGAGGGCTAGA
ATGCACAAGCTCGATAAACACACGAGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGAAGGCTAGCACAAAAGAGACACGATAGAACGAGGCGAGGC
CTCCNNNNTGTGAACCTCCTAACTACTCCTGATCTTTAGCGGCCTCCACGAAGAAGTAGG
CACTGTCGGGGGTATCAGTCGTCGTCGGCGGG