Contig Data
morexGenes
Links



Map Locations of contig_1578592 (4220 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_1578592

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_17922 2 1061 bp MLOC_17922.2 Available Available LOC_Os01g63770.1, FRAME:+3, EVALUE:6e-139, 13101.m06842 protein transmembrane amino acid transporter protein, putative, expressed





CDS Structure of MLOC_17922






Contig Sequence (4220 bp)

>contig_1578592 4220 assembly3_WGSMorex_rbca.fasta
GACTGGCGTTGCATAGTGGGGCAGCAACGTCACGGCTTGTGGAGTTTCTAAAAGGGTCAG
ATCGTGAAATGTTTTTAAATCTGGTTCATTTTGTGCTCATGTTTAAAAAAAGGTTAAAAC
AGTGAAAAAAACCTCGTGAACCGGCCTCTCGCGGGTACTCCATTCTAGCATAAACATGTA
TAATTTTAGGGCCTGCTACGTGGTTGTCGGACGATCTTTTAAAAAAATCAATCGGAATAG
GAGCCCTTAGATTTGACCCATTGAATGGCTGAGTATTACCGTGCATCATTGCAACATATA
CTTTGTTGCGAATTTTTTTGCAACAGACATTTCGTTGCAGTTTTTTTTGCAACACACGTT
TTGTTGCAGTTTTTTTACAACATACATCTTATTGTGGTTTTTTTAGTTTTTTTCAACAAT
CGTCTTGTTGCGGATTTGTTTTCAACAGACTACTTATTACAAGATTATATTTCTACAAAA
CGAAACCGTGTCGCATCACAGTAGTTGTTCACCACCAATATTGCAACAATACCATTGTTG
TTGAAACATGTGCCTGCACTTGCCATCGTGCTGAGAAAACGTGACGAGCAACGAAGGTGG
CGGACGCAACGTAATTATCTGCCAGTTGGGGGCAATAATTTCCCATTGTTTTAACCATAG
TTTATCAAACCGGATTGACAGTCAGACCAAAAGAAATCCGAAACTGTGATTTGAATGGTT
CTTTAAGACTCGTGAATTGTTTGAGCAATCGACCTAGAAAAAAAATCGATCAAACAGGCA
AAACCCGATGAACCGGACGCTTCGATGTTGATCTTACAAAAGCCCCGCGATTGACTTGTT
TTTATGTGTACAAGCTATAGATAGTCAGTAAATGAAAACCCTTTTTTGGTAGGGTTTCGA
CCAATTGGGAGCTTTCACTTTTGATTTTGTCCACATAGATAAAACCATCGGCTGCTACCG
TCCCCATCGCGGCTTCCCTTTCTCGGCACCACACGCGTCTCCCTCGCCGCTCTAGTAACA
ACCCAAGTTTTTATCATGTGTATGAATTAGATATTAACATGTTATTACTGGTTACTCTAT
CATGTGATTACACATTTTTTATCTATTGATTGGTGTATTTATTGATACAAATATACTACT
CCGTATTGTATTGCTTAAAAAACTGAGAATTTGATCGGCGAACCGACGGTCTGAACAGTA
AAACCTGAACCGACAACCTTGTTGGCTCGATTACCGGTTCAGATTTTCAAACCGTGGTTT
TAACTAGTTACTCGGTTGTCAGAGAAAAACAAAGCTGAACCGGTTTGATTACCGGTTCAG
TGTTTTAAACCATGGTTTTAACCGGTTGCTCGGTTGTGAAAGAAAAACAAAGTTGAACCG
ATTTGATTAGCGGTTCAGTTTTTTAAACCGTGGTTTTAACCGGTTGCTCGGTTGTCAAAG
AAAAACAAAGCTGAACCGGTTTGATTACCGGTTCAGTTTTTTAAACCGTGGTTTTAACCG
GTTGCTCGGTTGTCAAAGAAAAACAGAGGTGACTGATCCAAAATAAAAATTCAGTCACCT
TACCCCTAGTCACCCCATTCACTTTTACTAGTACTGTATAAAGCTTCATGCATTACCTGT
AGCACATTCAATGTAATTAACGGGTCTTAATTACTTTCTAATGTTATTATGCTCATGATA
AGTATCGTTTACATTATGCTTAATATTTGTTTTTTACAACGATAACTGTACAGAGATTGC
CCCTACGCTAGAGCGGATCGCTATAAACGTGGTTCCCCTCCCACGCCCCACTCTCTCAAA
CACCTCGCGAGAGAAGGAAAGCCGGCAAGGCCGGGAGAAGAGGACGCCGCGAGGGGGGAG
GAAGATCCGGCGGGCAGGGCTGCGAGATCCCGCGGCGAAGTAACTGCTGTGCGCGCACTC
TCTCTGCTGCAAACTCTGCGGTTTCGGCTCCGGGCGGCCTGCCAGAAAGTAAAGTGCTCG
CCGTTCTCGCTGCATATATAGCCACCGCCCACCGGTGCCATTGCGTGTGTCCCTGTGTCC
CGTTGCGTTTGTTGTTACATCGGGTTATTGGTTTCCGTCGCTTGCGTAGAGAGACAGAGA
GAGGGAGCCTGTGGAGGATGGTGCCGGGGGATCAGGCGGAGGAGTCCATCGTGGCCATGG
CGGACGGCGGCCACGGCAACGGCAAGGAGGGGGCGCGAGTGATGGACGGCGGCGAGGAGT
CCGAGCAGCAGCACGGCGACGGCGGGTTCAGCATGAAGGACATGCTCTGGCACGGCGGAT
CCGTGTGGGACGCCTGGTTCAGCTGCGCCTCCAACCAGGTACAAGCGCATCTGTCTTCTT
CTCCTTGCGGTTTAACCATGGAAGGCATTCATCATCCTCATCGCCGGTTGGTCCGGATCG
GATCGGCGTGGGTGCAGGTGGCGCAGGTGCTGCTGACGCTGCCCTACTCCTTCTCCCAGC
TGGGGATGGTGTCCGGGCTGCTGCTGCAGGTGTTCTACGGCCTCATGGGCAGCTGGACCG
CCTACCTCATCAGCGTCCTCTACGTGGAGTATCGCTCCCGCAAGGAGAAGCAGGGCGTCA
GCTTCAAGAACCACGTCATCCAGGTCGGTCCGTCGATCCATCACTCCATCGTCGCCAGTA
CTCACTCCAATCCGCCTCAGTCAGTCAGTTCTTCAGTTTCCTCCTCCTTCCGTCTCCGGC
TTTCCCGCATACGTTTCCAGTCTCGATCTAGTCTGCGGTCTGGAACGAAAAGGGGCTTTC
CTTGCATGCTATACAGTGTGGACTTGACCAGTTCCCTATCCCCGAAGCAAAACTGCAATG
GGATAAGCATGAATGCATGCATCTTTTCAGGGCAAATACATTTTGGTTCATCCTATATGA
AAAAATATTTTAAATTTTTAATTACTAAACAAAAAGTTGAAAAAGCTCAGAAGTATATTT
AGATTAAACTTGGCTTTGTTTTGCACTAGTACATAGATTTTCAAGAAAAAACAACAACAT
CGACTCCAGGCAAAAAACTACTCAGTTACCAATTGTACGTGTTTCCTACTGATGATGAAT
TGCTTTTCTTTCTAACCATTTCAGTGGTTTGAGGTTCTGGACGGGCTTCTGGGCCCGTAC
TGGAAGGCGGCGGGGCTGGCCTTCAACTGCACCTTCCTGCTATTCGGCTCCGTCATCCAG
CTCATCGCCTGCGCAAGGTGCTTCATCCCTTTCCTTTCCCATTAGTACGTAATATAAGTA
TCTGTTGGAGTCATGGAGATGAACTGAGTCGTGGAAATGACCAATGGGATATATATGGCA
ATGGCAGTAACATCTACTACATCAACGACCGGCTGGACAAGAGGACGTGGACGTACATCT
TCGGGGCGTGCTGCGCCACCACCGTCTTCATCCCCTCCTTCCACAACTACCGCATCTGGT
CATTCCTCGGCCTCGCCATGACCACCTACACCGCCTGGTACATCACCATTGCCGCCGCCG
TGCACGGCCAGGTACGCTACCTGGCTCATTCGTCCCACCACCACTACAAGTCACCCCTTT
GTTGCCTAGCTTGTTGGTGATCACGCCGATTGGCACCATGCTAACTATGACGAAACTGAC
GATGTATGTCGTCGGTCGCAGGTCCAAGGCGTCAAGCACTCTGGCCCCAACAACCTGATG
CTCTACTTCACGGGCGCCACCAACATCCTCTACACTTTCGGCGGCCACGCCGTCACCGTG
TAAGTACTACACTTAACAAAGTCTCAATGCGATGCTATATTCGCGAGTCTTATTTGAATA
TACGTGCAAAATTTTCTTTTGAATTTTTCCTATTTCCTTTCTACGTATATGTTAGACTTG
GCTAAGTCTCTTGTCACCCACACGCAAACAAACAATGTAGGTACCTACGGTTGCTTGGTG
AGTGCACCAACATCTATCGTCTACACTTTTACCTGGTGCAGCTTTTGCCTAGTGCTATGC
TAGGATTTTTTCACTGTTTTGATCTTTAAGGCGTAAGTTCATCACATAACGAACTCGGTT
CGAAAGTATTTCACGTTTTGATCCTTTTAGAAACGTCATAGTCCGTGGCGTTGCAGGCCT
TAGGCCAAACGTCAGTCTACTGGACGTTGGAGACCTCATGTGCAACGCCAGTCTACTGGA
CGTTGCAGCCCTTAGCAGAAATGCCAAGGGGGCTGGCGTTGCAGACCAAAGCAGAAACGC
CAAGAGGGCTGGCGTTGCAG