Contig Data
morexGenes
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Map Locations of contig_1578499 (2950 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_1578499

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_17901 1 627 bp MLOC_17901.1 Available Available LOC_Os01g01350.2, FRAME:+2, EVALUE:3e-62, 13101.m14979 protein SNF7 domain containing protein, putative, expressed





CDS Structure of MLOC_17901






Contig Sequence (2950 bp)

>contig_1578499 2950 assembly3_WGSMorex_rbca.fasta
CCCCCCCCCCCCCCCCCGCCCTTCGTCTCCTCGTGTGTACTGATGTACCTGTTCGGTGCA
TCTGCAGTCCGGTTGCTGATTTTTCTTGATTTTTGTTTTGTCTGTCCAGATGAATGCGAT
GAAGGCCGCCAACAAGGAGCTAAAGGGGATGATGAAGACTGTGAAGATTGAGGACATCGA
TGTACGTTTTGCTCCTCCCCATTTTTAGTTGCCGTCAACTCTGTCAAATTCGCTTAGTTT
CGTACTACCAAGTTCGTTTTGAAAGCTCCCCGGTGTGCTACTATATCAGTAACCATTCAA
CTGCAAATCGGCAAGACATAGCTGAATAATATATGTATTGTGCAATGAAAACTTTAAGCA
GAAAGGGCGCACTGTCAAATATGGCATATCAGAAGCTTAGGATCATACTAATTGTAGAGT
CCACCCTTGCGCTTGGCTAATCTGGGATCACATTTCCTAGAAGCATGCGGATAATGTCAA
AAGAGGNNNNNNNNGACCGAACTTGACATGGAAAGAGTCCATAAAGAGAGATCTGAAGGA
CTGGAGCATCACCAAACAACTATCCATGGACAGGGGTGCGTGGAAGCTTGCTATCCATGT
GGCAGAACCATGAGTTGGTCGCGAGATCTTATGGGTTTCACCTCTAGCCTACCCCAACTT
TTTTGGGACTGAAGGCTTTGTTGTTGTTGTTGTTGTTATTCATGAGTTTACAATTTTACA
TGAACTGTACAGCAACAAAAATTATATTCTTCTATTTTACCTTCTTTTCATGTGCAACAT
CTGGCCAGATCAGAATTATTGTATTAGCAATCAGCCTTACTTATCCTACATTCTGCAACT
ATCAATTTCTTTTCTTAAAAATAATGCATATGATGTGATTGAAATACCTTGGCTATTTTG
GCAACTATCTGAATAAGGACCAACCTCCTAGTGGTGCTAACTTAATTTGGCATAGTTAGT
TAGGGCCTATACAAAATTATTTTGGTATCCACAGTGGTATGTATAACTAAATTGACCTGA
TGAGCCACCTTAAATGTTTTTTCTTCCAATGTCTGTTCGTTACCCCCCTCCCTTCTTCAT
TTGATGGTAACACGAGTTCTTTCATGAACTGTAATTTTTAGAATATGCAAGATGAAATGA
CGGATCTGATGGACGTGAGCAATGAAATACAAGAATCTCTTGGTAGAAGCTACAACATCC
CTGATGATGTTGACGAGGAAGATCTAATGGGAGGTATGGAGGCTGTATTTTCAGTTGAAG
AATACTGTAACTTTATCTGTCTTTAGCGCTCTTTTTCTGGTTGCTCCTTCACTCTGCTGT
ATTGTCATCCATGGATGGTTATAAATCTTAATATATCCTGATGTCATAAATAGTCCTCTG
TTTACTGTTCTCATTTTTTTTTATTGAACATTGCAGAGCTGGATGCTCTGGAAGCTGATA
TGGAGTTTGAGTCAGCTGCAGTCCCTTCGTACCTTCAGCCAGATGAGGAAGCTGATCTTA
ACTTGCCTGCTGCACCGACTTATCCTGCAGCAGTTCCAGTAAGCAGGCACCAGGTAAGTG
GATTCCATGTGCATTTACATTGTACAACAGAATGCAATTCACACAGCATATACTTGGCAT
AATATTATCCTGAGTTTCTGGTGTTTCTTTCCTTGGGGGTGAATTAACATGATAAAAATA
ATAGATGGGTTCTGAAATCCAAACACTGTTCAGTATCAATTACCACTTTATGTCCGAGTT
TCTCACACATGTTTTCTGTTATTTTTGGACAAAAAGCATAAACGTACCAATCAACCTCCA
CACACGCACACACTAAGTTCACCAGTTTAACATGGTAGGACGATGCTGCATGATTTGCTA
CAGTTGGCCGATAACTAAGCAACCATGTTATTTTCAACGAGCCATTATTCAATGATGGAT
CATTTATTCGTTTATTATTCCGTAATGTCGTGCAGGAGGACGAGCTTGGACTGCCACCGG
TACCTCGAGCATCGCTCCGTAGTTAGAACTTGGAAGTATTTCCCGTCCTTGTTCTCAGTG
TTACTGTTACCTCATTGTTATTGATGCGAGAGTAGTCTTTGTGTTTGTACTTCAACAATC
CTTGTTAGCCAGTTCTTGATGGTACTGCTTCTTGCGGTTAAGCTGTGGAATGTACCTAGT
TTTCGGCTCTGTTCTGCTCTATCCTGGCCATATGGGGACTCTGAATTTGGGACGATCTGA
ATGTCCGTGCATATCGTTCATTCTTTCCTGATGGTCGTTTGGTTTTGAAGTAGCAATGTA
CCCTCAGCACAGTTAGCCGTCAGTACATATGATCATACACCCGCAGGTTTCTTGGTTGTG
ATATGGACTGAATAGAAATTGCTGAAAAACAGTGGTAGATTTCTCAAACAAAAACTGGAG
ATAGAAACAGAGGTCAGAAGGAGATACCTCTTTTTACTTATCCTGTGCATATGTTGCCCA
TTTGTAACAAATAATGGCAAGATAAGTATGAAGCCTGGGGTGGCAGAAATATCTGTAGAA
TGGTACAAAAATTTGGTCCCGTGGGAGGACTCGCTCATTGAGGTAGACATCCAATAGGGG
AAGAGCACATAGCCCCACTGTTATCCAGACGGACACGTTCTAAGGCAATATATAAGGCCA
ACTCCACCGCGCGATCCCAAACAAACGTCCGTTTGGATAGGGCGATGTCCGGGCGTGTCC
TGGGATGCGGAGGCCGTGCGTCCAGCTCGCGGCCGCATCCTTTTACCCCATCCTGTCCGT
CAGGGCCTAAAATGACCATATTTTTGTATTAAAACAAGTTTGTACATCAACCCCATCGAA
ATTGTCTCTAAATAAAATAGTTTTACAACCAAATTGAAATTGTCTTGTATGAACATAAAA
TGAACCAATACATCTATTGGTTGCCAATATGATCCCACATGTGCTCAACCAAGTCATTTT
GAAGATCCAA