morexGenes - Barley RNA-seq Database

Contig contig_1578472
Source Contig contig_1578472
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1578472 (7023 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1578472

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_17893	1	1395 bp	MLOC_17893.1	Available	Available	LOC_Os06g46900.1, FRAME:+2, EVALUE:5e-155, 13106.m04963 protein phosphosulfolactate synthase-related protein, putative, expressed
CDS Structure of MLOC_17893

Contig Sequence (7023 bp)

>contig_1578472 7023 assembly3_WGSMorex_rbca.fasta
GAGGCCGGGGCTCAGCCTCCTTTTCAAAAAAAAATGGTAGCTCTTCATCTTCCTAGTGCC
AACTCTGGTCGATCTTCTATCAGGCGTTAGAAAAATAAAAATTTAGTTTTGCTACTCTAA
CTGATCCCCTGAACCGAATAGAGGAGGATATGTTTTACTCTATCGCTTATCACATGTCTA
TATTTGCTTGGCCGTTACCACTTCGACCATGCCTTTGTCATGGACTGGTCGGTAACTGAA
CTGCTCAGCCCCAACAACGCCTCTGAGCCGCATGTAGGTATGGCATCCACCTCTAGCCGC
TTGGATCTCACTCGTCGGCGGTTCGCCGGCAAAGATACGCTCGTCCATCGACCGGGCTCG
ACACTGGCCCAACAACTCGTTGGCTCTCCATTGCTGGTCATAAAGTGTGACGACCGCACG
CAACAGGTGGTGCACCAACTTTCCACCACGCCGGAATACCCCAGATGGATGTCCTTCAAG
TGCAAAAAAGATGAGGTGAGTGTTTCTTTTGATTCGATTGTTGATTGGATTTGGCGCAAT
TTATAGCTCATTGTTTGCTCAAATTTTTGTGTAGAATGGATGCAAGTTTTGGTATTGCGA
AGAAGATTAGAGAAAAGTCCACATGTCAACCCTCAGCTAACCAGGTGGTTTGACTTTCAA
CCCTGAACTCCAAAACTAGTCGGATTCAACCCTCAACTTATCACAGGGTCCAGATTACAA
CCCTTGACTCAGTTTTGGGCTGGTCAAGTGGTTTTGACCTAGTCAAAGCTGACTGGACAG
CCCAGTCAGCATGCCACGCAAGCATCAGTCCAACCCTATCCACATCTCTCGCTCATTCAT
TCACAGCCGCACCCCGCACCCAAGTCCACCCCGTTGTTGCCTCGGTCGCAAGGACCGCCG
CCCCCCGCGGCCACCAACTCCACCGATGACCGGAGACAAGCGGCTCCGCCATACCACCGG
CAGGTTCGCCCTCTCTTCGCTCCCTTCCTCCCTCTGTTTCCCTTAGGTTGTCGTTGTTGC
TGCTAACCCTAGGCGCTGGCAAGCTGCTATTGCTAGCTTGGGCTTGCTAAAGCCCTAGTC
TTGATTTCTCATTTTGTTTTTCATCTTTTATAGATTGAATGGATCCTCTTGATTTCTTCA
CTGTGTGATTCCATTTCAATGGTGTGTTTGTGCGTGAGGGTCAAAATTTGGAATATGTTG
GAGGCAGGGAGGAAATTGCTCATGTCGAGCGACGCAATTTGTCCTTAGGCACTATTGTTG
TTAATCTGAAAGTGCATTCCGGTGTTGCTCGACGAGGAGAAATCATGTTGCTCCATTGGT
TATGTCCTGGAAAACAATTGTCTCATGGATTGATGGGATTAATTGATGAAAATTCGATGA
AGTACATGCTCTCATATGTAACGGATGGAGGAGTAGCGGACATCTATGTCGAGGACATAA
ATAGTAATGAGCCAGAACAACAAAGTTTTGGGGATGATGAAGTACCTGTTGTTGGTAAAG
AGGAAGCAAAGAAAAGTGACATTGTTGATGGAAATGGTACTGATTGTTCATCCGATAGTG
AGTTGACTGGGCGAACCTGTCGGCGTGTGGCGGCGCCGCCTGTCTCCGATCGTCGGCGGT
GGAGTTGGTGGCCGCGGGCGGCGGCGGCCCTTGAGAACCAGATGGCGACGGGGTGGACTT
GGGTGCGAGGTGAGGCCGTGAATGAACGAGAGAGAGAGAGAGAGAGATGAGGATAGGGTT
GGATTGATGCGTGCGTGGCATGCTGACTAGGCTGTCCAGTCAGCTTTGACTATGTCAAAA
CCGCTTGACCAGCCCAAAACTGAGTCAAAGGTTGTAATCTGGACCTGTGATAAGTTGAGG
GTTGAATCCGATCGGTTTTGGAGTTCAGGGTTGAAAATCAAACCACGTGGTTAGTTCAAG
GTTGAAATGTGGACTTTTCTCAGAATATTATATCGATGTATTGATAGCGAGAAATTTGAT
AGATATTCATGCACTCCTTGCTAAATACAGACTAGAGATGAGACTAGACATGACACAATA
CCGAATTCATTGGAACGAATAAGAAAGAAGTGTGCAAGCTCGAGAAGCCAATAGATAAAA
TAAATAATAGAAACATAAAGAAAATACTAATCCAACTTTTGACAGCAGTTATGAAGATTC
GGTATCTATGAAAGTATCTAATTATGGTTCTTATTTTTTTCTTTTTGGTTCTCGTAGCAA
AGAATTGACGAATTATGTACTTCAATGTATTAAAACGTCATTCAATGAAATAAAGAAGCA
ATGAAATTTGTTTTGATGGCCAAAATTGAAATGCAAATAAAAAGGAAAATATCCCACTAC
ATTAGGGAGCCGGCTAGATCCCATCAAAACTTAATGAAATAAAAATACTTCACTAAAAGT
GTACCCAGTCGGATCCTTGTTTATTTTTAGAGGATCAATTAGAGCTGGCCTAAGACACTA
GAACGTCTTCATTAGCAGCTTTGCCTTCTCCTTCAAATGTTACAGAATTCCGAGTGGTCG
ATGTGGTACCTTTTTCAATCTGGTCCGTTTTTTTTTCTTTTTTGCGGATTGCTGATCGCT
GATCCCGCCTGCAGCGGGATTCAATCTGGTCCGTTAGTGATGATGAGCCTTCGGAGCGGC
CGAAATGGAGCCTGCAGCGATGCAGCAACTTATCTCTCTATCTGATAGGGGAAGGTTATG
TGAACCTTGACTAAAGCAGGGGTTGCCGTTGCAATGTTTTTTTGGTATGCAAGGTACTTC
CTTCGTACCTAAATATAAGTTTTTTAAAAGGTTTCACTAGTAAACTACATACAGATATAT
ATAGACATAATTTAGAGTGTAGATTCACTCATTTTGCTCCGTATATAGACCTCTAATGAA
ATCTTTTAAGAACGAAGGGAGTACATATCAGGTCTTTTCGGTTGCACTAGAGCAACTTTA
ACCAATCCCCTAAAATTTAAAGTACTAAGCGGTTGAGTATCTCCTTTAGAAAAGTACTTT
TACTCCTCTAACAAATGATCATTTCTATCCGATCCCCTAACCTTTAGCAGAGTAAAATTT
TATTTTTATAAAAAAAATCAATTCTAATTTACATTACATGTCAGCTATCTATTTGCATTA
TTTACATTACATCTCTCCGAATGCATAATAATTAAGGTTCACATGATTAAAGAATATTAT
ATAAATTCGGAGTTTACAGATCAAATTATTCAAATTCAAACACACAAAATGGTTCAAGTG
AAGTAAATAGCATGATGAAAGCTACAACAAGATCATCTTGGAGCTGGGTATGAACTTCTC
GGTTCTCGATCCTGTGAAGGCTGCGAGAAATCTATGTATCATATTTGCATCGTGCTCTCA
CTCAACAGGACTCCCATTGGTGATGTACCGATAGTTCTCAGACATGAGTCTTTCATCTTA
AATGATCATGTTATGCAAGATGACGCAACATATTGCCCCAGAACCTTGGGGTTCCAATAC
ACGGTACATCCACGAACGATGGCAAAGCGCTCCTGAATAACACCGGAAACTCTCTCCGCA
TCCTTCCTTGCCGTCCCTTGACGTGTTGCAAATGAGATATCTTGTTCGGGATTGTCTTGA
GAAATGTGGTCCATAAAAGATAGATGCATCCACAAGGTAGTAACCCATCGTGTACCCGCG
GTCATTGGCCTTATAGTTGCAAGGATGAGCCTCTCCGGCAACAAGCCGAGGAAACAGTGC
TGATCTCGACAGCACATTTAGATAACTATAAGAGTCGGGCAATCCAAAGAATGAATGCCA
AATGCAACAACCTCAAGAATGATTGTTGAATTGTTGCAATGGCCTTTTGTACTGACCTTT
CCATCCTGCAGTTCAATTCTTTCATATCCAGTGCATGCAGTTAATAGATCCTAGCATCCG
AGATCATCCTCTTTCTTTACTCGATGCCAACAACCTCTTAATGTCTTCGTTGTTGGGTAT
CTTCAAGTACTCTGACCCAAAGATATCAATACATCTCTCGCGTATCTTTGAACGCCCTCC
CAGATTGTATCTTCTCCAATGCAGACATAGTCATCAATGGCATCGGTTGAACATCCATAG
GCCAGCACTCAAACAGCCGTGATACACTTCATGAAAGGGGTCACACTTATCTCTCTGCAT
GCATTCCTCATGAGTTTGAACCAATCATCATGCTTCTCCACATCATATTCAATGGTAATA
AAGAGACTTGTGTGAATCCAAAATCACAAGCGGAAATACTTCTCCGGATAGGTTGGATTA
GGATCAAAATACTCTCTCATAATCTTGGCCCGCTCTATTACGTTTGAGGTGTATGTGCCA
AACTATGATCATCTCTTTGGCTGCTGAATATCATCATTGAAGATCATACCAACGACCATT
TAGAAGCCGTCGTCGTCATATTCCTCCTCCTCTAATGAAGAGTCCTCAAAGATCACCTCT
CTCAGTCTCTTCTTCTTCAATTTAAATGACTCGGTTCAATGAAATGACGCTAGGAGTCCA
CGATGTCAAGAAGTATATACGATTACGGCTATATGTCGATCGGTTAGCGGTTATACAGGG
AGCAACTGGTTATTACAGGGATCAGCTAGAGTTGCTGTTAAGCAATGCAGCGAAGGCCCG
TATTGTTCCCGTCGTCTTCAGGAATCGGTGTACACGTCATCTCTTTTGTTCATCCCAGCA
ATCCTTGCAATCTTGCTCTAGATGCATCATCACATTCACACACATTCGAAACAAGTAGTA
GGACTTACTCCCAGTGCAAATCACCCCGAGATCATACACACACAGCCTCATCCTTATTAC
CTGCTACCAAGTACCAACACACTGCCGCCTCGGCTCCGGGACTCGCTACTACTTCAACAC
AGCGCTTAGGTCCCTCAGTACAGTTCACACAACTCCTCCCAGTACAGAAAACTCAGCTCC
ATCAACACTTCGCTTAGGCCCCAGTCCCATATCATTACTCAGCAAGGCCGTCATCACATC
AGGAAGAACGGCGAAGGGAGCAAGGGGCGGACCCTCCGGCGCACGTCCAAGCCGCGGAGG
CGCTCCAGGTTCATCACCTCGGAGTGGTCGGCGAAGAGGTTCACCTGCATCAGCGAATCA
GTTCCAAGGATCTCTATAGGATGAACGCCAACAGTGTACAGTTTCAGGGAGGGGTTGTGG
GAAGCTTGGGTACCCGTGGGCCGTATCGTTTGACGAACCACTCGGAGGTGTTGGCATTGG
ATGTCTCGAACATGGTCTTCTCGAGCCCGAGCCGGCCAACGATCTTCGCGATGATGTCCG
CCCTGAGGGAATCCGTGCGCTGGCAGACGTCGTCTGCGTCGATCATGATCATATCTGCAC
CTGCCTCCAGGCATCTCTCGGCCCTCCGTATCAGCAGGTCAACGTCTTCGACTCTTTCTG
CAAACCAACAGCACAAAATGCACACATTTGTTTAAGCAAGGGAGTGCAATGTAGTCAATT
ATGGAAGGAAACAAGTTACGTTCGCAGCCTCACAGAGGAACATGATACCGACAGTATTTT
TTCCACAACAGAGAATAGGTTATGACTTATACAACTGGAGAAATAGCACTGCAATATATG
AGTACAGTGGAACGGTAGTGCTTCTAGTTACCTGAGCTCCGCTTCACTGGAGCTATGTAA
GCCCCAAATGCCCTATCACCAGCTGCAGGCATCTCAGAACTGTCGAACTTGACCGAAAAC
AGGGGCTTGGCTCGCAAGCCAGTGTTCTTTATGAGGCGGACTAGTCTCAGGATAGCCTCT
TCAGGAAGCTTGAGAGATCCAGCGTTGAGCTCAATGGTGTCAAAACCTAACTCTTTGCAT
TCCTGCAACAATATATTCCATGTCATGTATCTGGCTTCAGAGTTCAGACACGTCTGTGCG
CATATAGCATACAACCAGGACAGGCAGATATCTACAGACCTCTACATATTGCTTGAAAGA
AGAGGGTCCTTGGCGCAGAAGATGCTCTGCCCAATCACCAGTGCTCACATACATGTCATG
CTTGTGCGCTAAATCAGTGATCTCTCTGATCAGTTCCTTTCCCATCAAACTATGAGATCC
ACCGGAGAACTTCAGGCCATCAACAAAAGGACCGAGGGAATCCAATATTTCCTGAAATAA
AATATGGCAGGCTTGAGAGTCTGCTATCAGGAATGTCTAGATATTGAAAAAGAAGCAGCA
TTATAATTAACAAGCACAGCAATTTAGTAAAGTGGGAACCCAGAAAGGAGCTACGGGTCT
TTGTTCTGATATAATTATCTCTGTATCTTGAGAGCTTCTGCGAAATTCAGTAGTATGGTT
CATCTTTCATTTTAAGAATGTGTGCATCATTTCATTTCATTCAAAAGGGTACAACATGGA
GTCTGAAGTAAACTTAACCTGCAAAGAGGCCGTGATGAAGACATGAGGAAATTGTGCACA
AAATACTAGAACAATGTCTGCTCATTTCACCATCACATATTTACATCCCGTTTGCGGGTG
GAATTTATCTTATCCATCTTCTGCATCCCAATCACACTCACACCAAACAGACTTAGACAC
TGGCGGATCTGAGTGGCAGAACATACGAGTCTGCACCAAATTACCAACGAGCAGCAACCG
TGCAACCTAAGTTGACTGAATAAACTGGAAACCCCTAAAAATGATCTGTAGATCGAACCC
GTGGTCGTCTCACACACCAACTCGCCGACACGCGTCCGCTAATTCTACGCACCGCAGAAG
TAATCGCACCGCTAGTTCAGGCCCCAGACGGGGCATCGACCTGTATTTGGTAGCAGCAAG
CTGCTGGTTCCGAACGAGACGCGTGCACGCGGAGCCCGGTGGAAGGAATCAAATCCACGC
GTCGCGGCCGCGGGCAGCGACGGACGGGCAAACGCGTGCAGCGTAGGCAGCGCTAGCATG
AAATGGGGGTTGGGGTTTACCTGGAGCGCGTGGTGGGCGGGGCGGAAGGAGTAGCAGGGG
CTCCTCATCTCCGTGACCCCGTAGCGGCGCGGCTTCTCCGGCCGGTCGTCGCCGGGGCCG
CGC