morexGenes - Barley RNA-seq Database

Contig contig_1578382

Source Contig contig_1578382

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_1578382 (2699 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_1578382

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_17879	1	2047 bp	AK376346	Available	Available	None

CDS Structure of MLOC_17879

Contig Sequence (2699 bp)

>contig_1578382 2699 assembly3_WGSMorex_rbca.fasta
TCTAAAATCTTAGGAATCATGTGCAAGTAGTAGTTTCATATACTCAATTTAACTTCACCT
TTGAGAACCAAGCAAGAAATAAGTACCCTGTTCTGTGAGTGCAGAGATGCTACCTCGTAC
TGTAGCAGATGTCTGTTGGAACTGGAAACGAAAATACTCAGTTTCCTTATTAGTTAGCTT
TACTCTTTAGATATATTATGTGTATTGTCGATAACTTTTGTTAGATTTGGACTCTCTACA
TGGATGGGCCAAATCAAATAATCACACACTACCTCCGTCCCATAATATAAGAGCGTTTTT
GACACTAGTGTAGTGTAAAAAACGCTCTTATATTATGGAACGGAGGGAGTAGAAGAGAGA
GCATCTGTTAGAGCCTCTAGACCAGAGGGTATACCTGTCCGAGAGCCCAGAGGGCTGACG
AGGTATCGACGAGTTGGCACTGTAGCCAGCACAGGTCAGAAAGGTAACATGGTAGTGGGG
AATAGAGATTTAGGAAAGACTTATTTATTGGTAACTTGCATCAATCGCTGCAGCTACGGG
GCCTTTATATAGGTGACTCACTCAAGAACAGTGTCCTGGATGGATACAAACTTAAAGTGC
TGCAGAACGTGACTGCTGCAGGTTCTGTTGAAATGACTCTTAACTTAGGGAGCAAAAGAT
CAATAGAACTCTTAGCCTACTACAGCTCAGATGTGTCTGCTGTAGCCTGTGAGTTTCCTC
CTCCGATACGTAATTCCCCACATAACTCTCCGTTGTGACAGTTATCTACCAATTAATTGA
TACACTGGTGCCCCCACTCCCGCCCCTCCAAATCTCCGGGAACAGGCTAGGCCTAGTACA
AAATAATGTTTTGAAATGCATGGCTAGACTTATATAGAAACACGAAATGAACAGGTATGA
TTCTTAATGTGTATGAGGCTGGCATCTGAAGATATACCTAAAATGTTGATGAATCATACT
GTATTAGGTAGTACAAAGATAATAGAGATTGAGGGTCACTCACAAGTGTACTCACTTGCT
TGTTATCTTGCGTAGCGTAGATAAAGTCTATGAACAACTCTTGTGGTTATGCTTTGAAGT
CTAGCGCTTGTTTTATGTTTTATCAGATCCCTGGAAAGTCAAGCTGACACAAAGTACTCT
GTATGCATAGGTGGATGACAAGTCATTTTGCTGATGTCACACAGGTTCTACTCGAATTGG
CACGCAGCCGGAACAAGATCCCGCTGCCCAAGTCTATTGCTCCACCTGGATCAATTCCTC
TGCCACCTGAGCAGGACACTTTGTTGAGTGAAAACTACCAGCTCCTACCCACACTGAAGC
CACCAACTCAGACTGAAGAAGCAGAAGATGACAACGAGGGCGATGACGCAATCCCTACCA
ATCCTAGCCCAAACTATTCACAGGATCAGAGGGGCAGCGGGCAGCCTCAGCCTCAAAGCC
AGAGCCAGAGGGTTTCTTTCCAACTGAACGCGGTGGCTGCCGCGGCTGCAAAGCACCCTC
TGGTGACAACTGATCAGTTGAACATGGGCTAACTGATTGTAGATTGCTGGCGGTTCCTTG
TCCCGCGAGCCTGCTTGCTGATGATTGTGTAGCTGCTGGGATCGCCCTTTCTGGCCAGCG
CCCTCCTATTTCAGCATGGAAAATGCTGATTGTTGGGGAAAGGAGGCAGGCTTGCAAGTA
GTGTATGCTGTAGCTGCACACCTCGGGTTAACTAGTTTCTGTCCATTATTATCAACTTGT
TGATTTTGTAGATCTTTGTCGAACTTGAACTGTCCTGTCGTTGTTTCTGAATGCTAAATC
GGTGTTCCTGTTATGCTTTTGGTGGCATGTAGCACATATTTGGTTGGTTAAAATGAGGAC
ATAAAAATACCTGCACATCTCATAAAGCTAGATAGAGGGAGTACCAATTTTACAATATAT
GGAGATAAAGATAAAAATCCGTAGTGCCAGATGCACTGCTTTTGTTTCTTTATCAGTAGT
TCAGTGTCTGTTTTCTTGCTTGGGGAGGAGGGCGGACGGATACCTTCTGTGCGTGGAGCA
TGTATCAGTTATTGAGAAATCAAAGTAAAAATATCAGCAGCCCGTCTAGCTCAGTTGGTA
GAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACGGTGGGCGACCTTCTT
TTTGTTCTTTCTACAATCCAGGAATCGATTTCCAAATGCAGTGCATGATGAATGGCCATT
GCATAGCGCTACTGGCTAAAACCACCACTATAAAAGAAAGAGAGGACAGATGCAAACCAC
GACAGATCCCGTCTAATCACTTAATCAATGGCCTAAATATGTTGTTAACGAAACTTCGTC
GCTAACGAAAACTCCTCGTCGCTAACAAAAACTCCATCGATCTCTCTCTGGAACTGCTCC
CGCAAACCCCCGATCGCCCGCCGGCCCCGCGCCGCTCCCGCTCGCCCCGCTCGGCCGGCG
CTCGCCCCCGCACGCCGCTCCCACCACCTCCTCGCGCGGCGCGCCGGCGCCAATTGCCAT
GGGCCTCAAGCTCCTGCGGCTCGCGGCGACACTCCTCTCCCCGGGGGCCTCCGGCACGGA
CGCGCACCACCCGTCGACGGCCCCGCTGTACGCGCACCACCTGGACGCGCTCCTCGCCTT
CGGCCGCGGCCCCCGCCCTCCCCCCCCCCGCCCCGCGCGGCGGGGGCCACCCGGCCCCC