Contig Data
morexGenes
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Map Locations of contig_1578345 (5210 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1578345

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_17870 2 2337 bp MLOC_17870.1 Available Available LOC_Os09g19750.2, FRAME:+2, EVALUE:8e-38, 13109.m01859 protein expressed protein
MLOC_17871 2 1503 bp MLOC_17871.1 Available Available LOC_Os11g10510.1, FRAME:+1, EVALUE:0.0, 13111.m01117 protein dehydrogenase, putative, expressed





CDS Structure of MLOC_17870






CDS Structure of MLOC_17871






Contig Sequence (5210 bp)

>contig_1578345 5210 assembly3_WGSMorex_rbca.fasta
TGCCGGCTGTCTTAACGCTTTCCGCTGTGGTTTCTACAAGGGCATGTGGATCCCATCTCC
CTCGCGTAGATGAACATCACCATGATATGNNNNNNNNNNNNNNGGAATTTTTTTGTTTCC
CATGCATCGGTCCCCAACAAAGGCGTGGCCGGCGTGGTGATGGGGCGCGGTCGACGGGGA
CGAACCACGGGCGACGAGCGACGGGGCATGACGGACGGCCGACGGGGTTGGACGCGGCCG
GCATGGCCGGCTCGGACGGCTGGAGGAAGGGGCGATGGTCGCCGGACCGGAGGAAGGAGC
TCTTACCACAGTTTTACAATTTCTTTTACAGTTTTTGTTCGGATGTAGATAAAATGAACC
CTTAAAATGGCTTTTTTCGATTTGTATCTCAGTTTTACAGTTTGTGTTTTTACCGGATCT
GCTAGAGATACTTTTACAGTAGGAAAAAAACACCCCTTAAAAAATAGAAGAAGAAAAACA
AACAGGCGTTCGTGTGAAAGTAAATACAACACGTGTATGCAAATTCGGCCTCGCTTTCCT
CTCAAAAAAAAAAGTCGACACGACATTTTTTTAACACAATACAAACGCAAGCGCTCATAT
ATACGCGCATATAGTTATTCCTATGAACGCACACACGCACACCCTAACTCTATAAGCATC
TCCGACAGACTAAACCGTCATATCATCTTAATATTTATGAAGTCATCGTAGGCGCGCCCT
CGTTCTCTCACTGAAAGTGCATCCTCGAAAATTCTGAAAAAAAATGCAGAAATAATGACG
ATTTGTGGGAGAAACTGGAATCCGCTTCGATTTAGTTTAAGTAGTAATACCCCAATACGC
CTTATGACCCGATTATACGGTAAATAAACTGTCTTTGCGCAGGAAGGTGGGGTCGTGGTG
ACGGGAGAGAGAGGGGGAATCAGGGAAGGACAGAGCGAGAACACAAAACGAGACTCGGCG
ACGGCGACCAGGGAGAAGCAGCACAAGGATGGTGTTCGGCCGGAGCAAGCCGTCCTCGTC
CACGCCCTCCCCGGAGGCCTCCACATCGTCCGCCTCCGCGGCGGCGTGCTCCGAGCTCCG
GGCGGCGTACCACGAGTGCTTCAACCGTTGGTACGCCGACAAGTTCGCCAAGGGGCAGTG
GAACAAGGACGACTGCGCCGCCGACTGGCACAAGTACCGCGCCTGCCTCGAGGTAAACCC
AAGCCCACGCCTGCCATCCCCCCTCCCCCCAACCACAGTTCGCTGTCATTGCCTGCCACT
TTAGATTGGATCACCGGTTTGCTATGCGCGCGGTGGAGATCCACCCGCCATTGACCGCCT
AGTTTTCTCTAACGGGGCTCCCATCAGGGATGTGGATTCGTGGTTACGAAGATCTTATAG
TTTAGGCTGAGGTAATTCCAGTGAGGCATTAATTTCATGTAAGATTTGGAATTGCTTGTT
TAGGAAGATATTTGAGGAGGGACTGTCTCGATTGTGTCGCTTCTTGGACTGGGTTGCCTT
AAGGTGGGTATTCTGGGGAGAATGTGAGAATCGTCATAGTAGGGGGGCTTATCGCGTTGC
TTATTACAATCTTGATTTAGATTGTGCTGCAGTCCTCATGTTGCAAATGTGGGATCTGGC
CATCGTCTGCAATGGCAGTTCAGACTTCAGAGCTTTTATGTCGACAAGTAATGTAGGCTA
ACGAGGATGTTGTTTCTTGTTAATTGTTATATCCACTCTTCAACCCCAAAAGGTTATTGC
CTAAAGACAGAGGTTATTAGCCTTTTTTGAATAGTCCGAGCAATTGAGCTTGCAAGACTC
TGCTAGTTCCATCGCATTTGCATGACAAGGCAGTTAATTGATATCTCAGGGGAGCTCAGT
CTGTAGAGAGTTAACTAACAATGGATTTTTATTTTCTGGATAAAAGGGACCGAAGTAACC
ACTAACCAACAAACCCTTCTATGCTTACATCCCAGGCTACACCAAAAAGGAATCTTGCTA
AAACCATTTGCAGTTACAGGTGTTTTTGTTTTGCTTATTGGCTGCTGCTAGGTTGTTTTC
TAGGCAAGTATTGGTCATAACTGGTGCGATGCTGGTGAGAATTCGGGACATGGTTGGTAG
GCATTCTGGTTGCTTAGTGGCTGCCAACCCAGCCAAAGATTTGCTATTTCTTAGGAAAAC
TCACCGTTGCCAATTTCTATTGTTGGACAGACTTTTTTTTTCACTTGCAGAGTTGGAAGC
CCATTGTTCTTCATGACTTAATTATGTAGTGTAAATAGCAATGATGTGTATTCCGTAAAA
CTGGTGGTTATATCAAATCATGCAAGATCGATGGTTCACAGATTTGTATTTTTGTTTGCA
GTAATTTGCCATTACTGCGAGGAACGAAACCTTCTTAACAGCCGAATGTGTTTTACTATT
ACTTTTATTTACAGATAAAGTTCTCACTTTATCAAGATTCGGCCTGTATCTGTGTTATTT
ACCATGTTGTCATATATCTGTGTGTTACGAATGATTGTTCAGGGATTGAGTTCAACAAAG
TTGTTTCATTCACAAAAGCACTGTTGTATCGCACGATGAGTGTTGAACATGCACCAGTAC
CCTGTTTTCTTCACTGCGACATAAGCAATATGTCTTGTCTTGAATTTCAGTCATTTAGGT
TTAGTTTTTTTTTTCTTTTTTGAGAACAGGTTTAGATTTTATGATTTAATGTTGCATGTT
TCTTGCTTATCTAATGGCCCATCGTTCCGCGTTTTAATTATTTCTAGGAACATCTCGAGG
ACAAGCATCTCAGGCAAATCCTACTGGAGTCTGAAACTTCTCCCTCTTATGCCCAGCTTG
ATCCCAATTCTTCGTCAAGACAAGGTTCCGCCCCTTCAAAATGACAGTCTTGTGCTAACA
ACATGGTCGAGTTCTTTGCTTGATCAAAATTCAGAGATCATTGGTAGAGTGAACCACAAA
GTCTGTATTTAGATACATGTTATGTCCCTGGATCATGTCGATTTCAGCTCATGAGATTAA
CTTCGTAAAATTTGCTTGGATCTGACTGTACCCAACTCACAAAGTGTACTCAACCAAGCA
ATAGTTTGTAATACTGAGCAGTTCTGGATTATGAAATTAGTTGAATAGTATCAGCTGTCC
AGGTTCTGTAACACTGTTTCGCGCACGCTTCCTGTAGCCAAAGGATGAGATGTAGATTAA
GTCTGATCATGTGCTGTGATGAGAAACAAATCACTGATAGTATTTCGAATAAGTAGACAG
AGGGAGGGGGGTTGCATAAGAGCTGATACATGTGTGTTGTACAATAGCAGCGAGGGATGA
AGAACAGCCAGGTGCTCTACTCTACTCCTCCATCCTGATGACGCAGCGCAGGCCTTCCCC
CCTGAGCATGAGGTCGAAGGCTGTGTTGATCTGCGAGAAGGGCAGGCTGTGGGTGATGAA
CTTGTCCAGCTCCAGCTCCTTCCTCATGTACATGTCGACGACGCCGGGGAGGCCGGTGCG
CGGCTTGTAGTTGCCGAAGAAGGTGCCCCTGAGCGTCCTCTCGTTGAGGAAGTTCATGGG
GTGGGTCTTGAACACCGCCTCCTTGTGCGCCACGCCCCACCCCTGCTCCCATCATCAGGC
CATAGCATTAGTTTCAGGATTCAGTTTCAACTTTGAAGCAGAAGAAGCAAGGTGGTCATC
GTATGTACGTCGTGCACGCATTCAAAGGCGGATATCATGGCGTCGGCGTTGCCCGTGCAC
TCCACCGCCCGGTTGACTCCTCCATCGGTCATCTCCACGATCACCTGTGGCGGCACCACC
ATTGATTGGACTGTCAGGATTTGATTTGGCGCAAGGTTCTTGTGTACGAATGTCATGAAC
AAAAGGGAGAGATCGATGCATATATGCATGTATACCTCTTGCACCGGCTTGGTGTGGTCT
TTGGGGTTCACAAAGTCGGTGCAGCCAAATTTCTTAGCTGAAAAACAATGGACATGCATG
GGGTTGCAAGGTTGAGTCGGTGTGCTCCGATAACTTTTGGCCAAGATGGGTGGAGTATTT
TTTTTTCCTTCTTCCTGAATATCGATGGCAGTGGCAGATTATCATGCGTACCTTGTTCGT
GTTTTGCAGGGTTCAAGTCCACGCCGATAATCCTTGATGCGCCGGACATCCTGGCCCCTT
CCATGGCCTGATCATGCATGTGTCAGATACGCAGCAATTTTGGCATGGTTATAGCACACA
ATTCTCATCGAAATCAAACAATATTTCCTTGAGGAATACTTACAGCGAGGCCTACAGCTC
CAAGACCGAAAATCGCCACCGTCATACCCTTCTTCGGTTTCGTGACGTTGAGCGTCGCAC
CGAGCCCTGAATTGGAGGCGTGACAACTTAGTAGTTCCACCAAATATGTTGATTTCACCG
GCTGGGAAGATTTCCATACGTGTAGGTATAGATATAATGATAGATTCTTACCGGTCGAGA
TACCACAGCTAAGGAGGCAGACTTTGTCGAGGGGCGCCTCGGGGTCGATCTTGGCGACGC
ACCCGACATGGATCACGGTGTACTCGCTGAAGGTGGACGTCCCGAGGAAGTGGAAGATGG
GTTTCCCGTCGATGGTGAAGCGGGACTGCCCATCGTCAATCATCACGCCACGGTCGACAT
TGATCCTGAGGAGGTCACAGAGGTTGCTCTCCTCTGACATGCAGTGGGCACACTCCTTGC
ACTCTCCGGTGAACACCGGGAGGACATGGTCTCCCGGCACCAGCTCCGTCACGCCCTCGC
CAACGCTCTCCACAATGCCGTGAGCATACAAATCATAATTCAGGTGAGGATTCAAGCTAG
TAGATTTCATCAAGTAATTAACAAATACTTCCTTCGTTTTATAATATAATAGCGTTTTTA
ACACTAGGGAGTAGAACTTAATACAGGGGAAAGAGAGTGGGAACTAAGAGAGAGGCAAAA
GGTGAAGATGGATACCCTCCAGCTTCATGGCCCAAGATCCTAGGGAAGACCGGAGTTTGG
CCCTGCCCAAATCCAAGCAGCACGTCACCAACACCCACTGATCCATCCATCCATTCAGAT
GAAGTAATTTGAAAACACAAAAGTGGTACGTTCGCCTCCCAGAAGTAGACGTCGGTGTGG
CAGAGGGCGGTGTAGAGGATCTTGTCGCGCACCTCCATGGCCTGCGGCGGCGCCACCTCC
ACCTCCTCCATCGACAGCGGCTTCCCGGCCTCCCAGGCCACCGCCGCTGC