Contig Data
morexGenes
Links



Map Locations of contig_157833 (4940 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_157833

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_17865 1 1285 bp MLOC_17865.1 Available Available LOC_Os05g49200.2, FRAME:-2, EVALUE:0.0, 13105.m05261 protein aspartic proteinase oryzasin-1 precursor, putative, expressed





CDS Structure of MLOC_17865






Contig Sequence (4940 bp)

>contig_157833 4940 assembly3_WGSMorex_rbca.fasta
CCACGTCGCCGGCCTCTGGCCCTCTCACACTTGTCCCCTTCCTCCCGCCACCACCAGAGG
TCCCGTCGGGCAACGCCCAGGGCGGTGACTACGGTGGCAGGGCCTTCTCCCTCGTGCGGT
GGTGGCAAACTCCTCTAGCGGCGGCGGCGCGTGGTTCAACGGTGATTCAGCAACGTGGAG
CGGTGGGATCCTGACGGCATGCGCGGGGTCAACGGCGATAACGAAGGAGCGGCCTCCCTG
CGACGGAGGCGCCCCGGATGGGCTTGGGAGGGCCGGTGGTTCTGGGATGCGGCTACAGGC
GGGCGCGGTGAAGCTTGTCAACGTCGGTTTGTGTGGCACCGTGGTGGTGCGGGCGGCCGG
CCAGGCGGCGGCGGGGTTGATCCTTAACGTCCACCCCCTGTTTTGATGGTGGTGAGACTG
TGGCAAGCGCCTCCCGTCCTGCTGACTGTGTTCTAACTCACCTCTCCTCGACGGTGTGGT
CAAGCCGGCTCCTTGCTGTGTTCATGGTCGTTAGGGTCGACGGCATGGCCTGGGCGAAAT
CCCTACGTGAAGCAGACGACGGCGGCGCCCACAGGCGTCGTCGCCTTCTTGGAGGCGTCG
TCATGATGCTACCTGTGCTTCCCCGCCCCAAGCACCAGGGAAAACCCTGCTCGAGGGAAA
CCCTAGGCCCGGCCTTCGGATCGGGCGACGGCGACGCGTCTTCGTCGTTCCGCTCTTTGA
GGGCGTCGCTTTGGTGGCTCGTGGAGCACTTGGTACTTGGTGGAGTTTGTGTTGGCCATC
GCTGAGGGCGTGGGCTTCCTAGACGCCATGTACACCGTCTCGCGCGTTTCTTAATCGATG
CCTCCTTCGATCGGTTCAGCCCCGCCGTCCACTCGCCGATTCTTAGGCACTTATGGGCAG
GCGGTGCGTTGACTTGTGGCTTCTTGGAGCCGGAGTAGGTATGAAGTTGTCATCTTCGGT
CGTGACACGGCTTTGAAGCTCGATGTACCCCCTCCTCGACAATCATGGCGGGAGGATGTA
CGTGGCTTTGAAGCTCGATGTACCACCTCCTCGACAATCATGCCAAGAGGATGTGCAAGG
GCAATCTTATTGCTTGGCTAGTGTGGGTCGTGTTTGTATCGTGTAGCTTGACCTCTTCTT
CTATGATATTGATCACCTTTCCACGGGCGTATCCTTGAAAAAGGGGTCTTTTGCCCTGGT
TTACTTCTAAATTTTACAGACTCAACTCAAACTTGAAATATCCATTTCTTGTGATTCCAG
TGTAGCATCAATCAACAGAGTTGTTTTTCCTTTGATTTCATTCTAGTATTAATCAACCAA
GGGTTTTGATCAGATATCATATCCATCAATGCCAAAACCGAAGAGAAATTTGCTCCCAGC
CACTACTAGAGCCTTCTCTGGTACTGAACCGATAATTAAAATGGATCAGTGGGAGTATCA
TGTTTAGCATCACAGAAGAGCCTACTATCAACGTGGCGTGACTATATATCTTGAAGCTTC
ATCAACCTGGACATCAACCTATATATCTAATTCGTATAGGTACGCCTCTTAGGAACCAAG
ATTTCATAGCGGGCAAATAAGATTCTGGCACACCAAGATTTCATAGCGGGCAAATAAGAT
TCTGGCATCGTAAACCACAGGTTACTAGAAGGCAAACGTTGTTTATCACATACTAATTCG
ACAACATCTTAGGGGCAAACGTCCAGAAACAGTCTTGCCATCTTAGGAACCAACCCTTGG
TCATGTCAGGCAGGGTCTTTGAAAAGCAGCATGCAGCATATATACACAACACACATCACC
GGTCAAATTCGGAGTAAAAAGCTAAGCTCTCTCCCGGCGCAAGTGTCCGCCTCCACGATG
GGGCGCTCGCTCGACCACCCTTCAGGCCGCCTTGGCAAAGCCAATACGCAGCTTGCCGTA
GTCAAAGACGGTGTGGTACGGGCCCATGAAGACGTCTCCCAGGATCCTGCAGTTGAATGA
AAGATGTATGTATCAGCACCAGAAGCAGAGGTCAAGCGTCAACAAGGTAACTGGTGAACT
TGTTTCTAGCATGCATCCTCGGGTAGGATTTCATCAGGTGTAACATAACTGGTATGCGCT
TGACAAGACAGCAGAGGGCGTAGATAGATTTACCAGAGAGGACCGCGAGGAGGCGGGATG
TCCATGGCTGTGAATCCACTGATGCACTGGGCAGCAGCTCCTTCACCAACCTTCAGGATA
TACTGCACAATCGAAGAAAACAAAAATCAGCCACAAGGCGGCTAAGCAAGTAGGCTAGTT
TGATGTGCAGAAGTAAGAAACATAGAAAAAAGCCAGCTGGTTGGTAAGCTTGTTAGGTAA
TCCGATCGCATCTCACAAGGGAACAAATAGAAAAGGGAAATCATGGAGAAGAAGTCGCAC
CTCTTCTGGTTTCAGCGCAAACTTCTTGCCACCAATGGTGAACTCAATGTCAGGCATGGA
CCCAAGGCTGCCGCAGTCCACGGCTGATTCTCCCATGGGACTTGGGAGACGGTTGCACAG
CTGCAAAATTCACAGTTAAGCAGAGTACCACCACACGAAAGAAGTATAGAGTGAACTTCA
CTGAAGGTGATAAGCTCACCTGGTTAACGTAATCTAGTATGAGATCCTGGGTCTTGTTCT
GTGCAAGTTGGTTCTGCATCCATACAACAGCCATCTCACAGGCACTGCACATGGGATCGG
CACGGAGGCCATTTGATTTCACAGGTTCATCATCGACCACGCTCCGAATTCCGGCACTGT
ATTCACATAGATGAACAATGGAAAAATGAGCCACAAAAGTAAGAACAAGAACATGAGAAT
GTCTTGAGACCATTCCACTTATTTGTTCAACTGTAAAATTAATTCTTAATGGTAGTAACA
ACTAACAAGTGACATCATAACTAGCTAATAGTCAAACAATAGATACTCTGTTTCGCAAAT
TCAATAATGGAATTTGCAGTTCTCACCTAACACCACGAGTCCCATCAAAGGTGCACAGAC
CAACCTGGGAGCAGATCTTTTTGGGCTGTGTCTGTAATATTAAAACACAGCAAGTTCAAT
CCCACTCCGCTTAAGAGGCAACATAATTCATCAAACCAGCTACCAAAACCTAGTAAACAG
GCAGTACGGTTACAAACCTCTGCTAGCAACAGGTCGAGGATCTGTTGTCCATATTGAGAA
ACAATTGTTTTGCACTCTTGGCTGACTACCCCAGCCGCACCAATCTTCTCGTTAATTTCA
GTAATTATGGCCTACATTGGTGAATAGTAACTTGTCAGAACTCCGTGCAATTCCACATGG
AGCAAAGAAGAGAAAATCAGTGATAAACAATGTGATCCAGATTGACTAGTACACAGCATT
AACGATAAACCATATTAGTATAAGCTTCTCTTTTTAAAAAGCAAATTAAGCTCGAGAATC
ACAAAGATCTCTGAAATTGTTTTCACTAAATGTTGACGCTTCCCATGTATCTGATTTTAT
CTTCAAGCAAAAAGTTTTGTACAATGATAATCACACTCATGAAATCAAGCAAAGTGTTCT
TCCAATATTGTGCTTTGTAAGTAAAAGGGGTAGATGCTATATGACTGCACTTTTTAAGCA
CATAACATATGTCTAGCCTACAAATCTGCAAGATCATACAAAAATAGTGTTGATCATTGT
CACCTACAAGTCTGCAAGATCGTACAAAGATAGTGTTGATCATTGTCATTGCTAAGGTAA
TTGCTCCAAAATAATAGATCAATTTGATAAGAATGTTGCAATTTTTACTAGTAGATAGTG
TCATAGAGAAAAGCAATTTCAACTGAATAAGTGGACGTCACTCGCCACTATGAAGATCAC
AACATACCGTGGGGCCAGCAAGCAGTGAAGTTCCAGAATCAGCAATTGCGGCACAACCAC
CAGCACAAAATCCTGACGATGGCATAGGTTTGAACACGCATGAGATAATTATGATTTAGT
CGCATTAGATTTTAACATGAAGATAACCGTTCCAGTACCTGTGGACTTCCCTCCAACCAG
GACATCACCCATGTCAAACTGCAGCAAGCAGGTGTGCATTTTTAGGCGAGGCGACCAAAT
ATTACTCAAATTGCACAAGAACGAGACTAACCTGCCAATATCCCTTCTGGGTGACTGGGA
CATATGTGTGTTCACCAACATAGTGCTTAGGATCCATTCCTCCAAAAATAATCTCACCAC
CCTCTCCTTCATCAACATGTCGGTTGAGCCAGAACGAGAAAACAGGATCACTGACAAGAC
CTTGCTCTATCATTTTATACCTGTGAAGTTCATTTACCATTAGGGAACATGAATATGCCA
AGCCTGGTAAGTATGACAGTAAAAAGAACTAAGTAAATGCATGAAACAAACTGTAGGCTA
GTTCCACATACATGAACACAAGTACTCGAGTACATAATTGTTTCCTTAGAAGCAAAACTA
CCGTGAGTCCATGACAGATGCAGCAAACATGAACACACAACAAAAAGTCCAGCAGGGTAT
CACTTGAACTTAAACAACTAAATGAAGGAAGGTTGTTATTTTCTTCATCAGGGCAATATT
TAGGACGCTGACAATCGACTACTAAAACTCTAAAAGCCAATGTCCTTGCAGCTACCAATG
AAAGAATTGTAATAGCACTGCATGGCCAAAAGCACTATATGCAAAATAACATCATTGTTC
TTACAGCAATTCAACTATGCGGAAGAGATGAATAAAGACAATCCTAATGGCCAGATTGTC
TTACCACACAGGTACTGCTTTGCCAACAGATATTTCCTTAAACCCAAGCCCAAGGATACC
ATCGAACTTTGCAACCAAGAAAGTAATACCTGGCTCCTTTGTAGCTTCAATGAACTCCTA
ATATGGCAACCAAACAAGGTATTAACAAGAAAAAATAACTAATATGACGCATATAATCAG
AGATAATCAACAAATCAACT