morexGenes - Barley RNA-seq Database

Contig contig_1578320

Source Contig contig_1578320

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1578320 (1864 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_1578320

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_17861	1	724 bp	MLOC_17861.1	Available	Available	LOC_Os11g02389.1, FRAME:-1, EVALUE:1e-39, 13111.m00165 protein protease inhibitor/seed storage/LTP family, putative, expressed

CDS Structure of MLOC_17861

Contig Sequence (1864 bp)

>contig_1578320 1864 assembly3_WGSMorex_rbca.fasta
GGCGGACGGCGGGATGGGCGAGTGGCTGCGCTGGGTTTCTCTACGACGGACAGGGGAGGA
GCCAACAGATCTTGCTGGCGGGCGGCTCGTCATGAAGGCTGTTTGAGGGTGGCCGCCGGC
CGGGGTGGCCAGCGGCGCGGAGCGGGGGAGGACCCGGGCTCAGCTCAGCTCATGAGCGGG
ATGTAGAGATGCAGCAGCGAGTATCCTCATCATCTACTGAGCCGGCGTGACGCACGCTTG
AATCCGTAAGCAAGCTTATTATATGCGGGACGCACGCTTGAATCCGTAATTTTCATCCAG
ATTCAAGAAACATACGGTCTACGGTAAACTAATTCATAGAGAGGTATATATATGATACTG
TACTACGATCCTAGAGCACATAAGTAAATTATTATATGAGACGCGAACGTGAGGAAACAG
AGAGACAAGTTACACACTGAGCACAGAAGGAGGTGTATGCATATAGTCCATAAACACTGG
GAGTGCCCATGGTACAAACTCTCAACTCTCACGTACATAGATACTGATCTCCTCCAAAGG
AGTACAGGAGAGAGTTCTTATTCAGCATAAACTCGGCATAACTGGTAGCCATACTACATA
GGGACAGAGGCTGCGCGCTTCAGCTCCACGTGGATCGATGAGCTGAGCACCAGCTTGACG
GATCGTCGCTCAGTAAATCCTGCAGGTCAATCATGCGTGTTAATGTTAATATCAACAAAA
TTTACGTGGATGAATGTTCCTATATACTCACTCCGTTCGTAAATATAGTTCTTTTTAAAG
ATTTCACTATGGATGAGTGTAAATTTAATCACCTGGAGCAGTCGATGTCGGGGCTGATGG
TGTATGGGACGTTGACATTGCACTTGGAGGGGATGCTGGCGGCGTTGTTGAGGTTGAGAT
TGTGGATGCCGCGAGCGATCCCCTTCAGGCAGTTGCAAACGGTTTGGCGGTCGCCCGAGG
ATTGCGCCTGGTTATGGAGATCCCTGACGCCGTTACAGCATTCGCCGGACGGGCCGGGGC
CGCCCTGAACGTAGGTCAGGCAAGGTTTCATCTTGCTGTCAACCTGGCCGCAGTTGAGGG
CCACGGCAGCGCGCGGGGCCGCCGTGAGCATCAGCACCAAGGCGACGGCCATGAGCAGTA
CCTGAGCGCGGGCCATGATCACTTCTTAATCTGTAGCTAACAGTACAACGTACTAGCTAG
TGATGAGCAACTCGTGGAGGTGTGGAGAATGTTGGGAGGAATGGAGGGGCTTAAATAGGG
GTTCGAGCGAGAGATGCCTGGATGCTTTAGTCGGCGGGCCAAATCGACGGGGTTACTGGA
GAACAGATTGTATCTCCCGCTCAGGCCGAGCCCCGCGACACGTCGACTCGCCTTTGCCAA
CCATCAAGTGTTGATGACTGCTAGCTGCTGGTGCCTCGCTGAGTCTCAGTTACGGCTAAA
TTTTTTTAACTCCTTATATTATACTTCCTCCGTTTACTCTTGGGTGCTTGGTATCCTAGT
ACATATCTTTCTTGGATGCTTTGGCATCATAGAAGCTTGGTGATGCCTTGGAACTCAATC
ATTATGGTGTAAAGCTCCATGCAAGCGTCGAGGTCTTCAATTAGGTTGTGAAAATTGCCC
CGAGCATTTGAGGTTACCTCGAAGCCATATTTCGTTATGATGAAGGTTCGTGGTGTTGTT
GGGAGCCTCCAATTAAGTTATGGAGATTGTCCCAACCATGTTTATACGGGTTCAGTGACT
GCCCTCAAGGGTCCCTTAGTGAAATCACAACATCTTGCATTGTGCGAGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGCCTCCACACTGCTTCAAACGGAG
ATTA