morexGenes - Barley RNA-seq Database

Contig contig_1578290
Source Contig contig_1578290
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1578290 (6375 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_1578290

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_17850	2	3498 bp	MLOC_17850.1	Available	Available	LOC_Os06g22820.1, FRAME:+2, EVALUE:0.0, 13106.m02452 protein cyclin-dependent kinase F-1, putative, expressed
CDS Structure of MLOC_17850

Contig Sequence (6375 bp)

>contig_1578290 6375 assembly3_WGSMorex_rbca.fasta
GGGCGGGGCGCCGGGGGCGGGGGGCGGCGGCGGCGGGAGCTGGAGCATCCACGGCCGCCC
GGACGTGACCTCCCGCTACGACGTCCTTGGACGCGCTGGCTCCGGCGCCTACGCCGACGT
CTACCGCGGCCGTCGTCGCTCAGACGGCGCACCGGTCGCCCTTAAGGAGGTCCACGACGC
TGTCAGCGCCCAGCGCGAGGCCGATGCCCTCCTGGCCGTCGCCTCTGAGTCCTCCCCTCA
TGTAGTCGCGCTCCTCGACCACTTCCCCGGCGGCGACCACGACGATGACGTCCTCGTCCT
CGAGTGGCTCCCGCTCGACCTCGCCGCCGTCGTGCGCGAAGGGAGGCGCGCGGGCGGCCT
CCCTGCCGGCCAGCTCAAGCGATGGATGCTGCAGGTCATAGAAGGCGTCGCCGCCTGCCA
CCGCGCCGGACTCGTGCACCGCGACCTCAAGCCCGGAAACCTGCTCATCTCTGAGCACGG
GGTCCTCAAGGTCGCCGATTTTGGTCAGGTTGAAATCCTGAAAACGCTTTTCTTAGTTCG
ACGAATGACTTTATTTTATGGATTCATGCGTATAGAATCGGTTCTCTATCTGTAGTAGCA
TGTCAAAACTGGTAGTTGGATGATTAGCCATGGACGTCGGCTGATAGTGTTTCTTCAATC
GGCACAGCAATAGTGGATCTTGTGTAAACGTAGATTTCTTATTGTGCTCGGTGGTTATAC
TGGAATGGGGGCTCCTGCTGCAACATGGCAGTTCTAATGGTCTCTAACTCTCTGGGGATA
TAACTGGTGAGGAACCATTTTATTTGCAATCTGTAGACATGCAGAAGGATTTTTTTAATA
TATATAGAAGGATATGTACATGTAGAGCATGGAGCTATTGTTCTGGAAGTTTCAGAAATC
TGTTGGTGCTAAATGGACACCCAAAAGTATATGCCTTTTTTGGACTTTGCAGCTGTTGCT
CAAACATGGAGGTTAAATATCTTGGAATTAAAACAGGCTTATAAGGGAGAAGTTGACAAA
TTATAAACAATTGTTGGTCAGCAGTAAGGTTAAATATTTAGAAATCTATATAATGGGTTA
ATGTATGCTGAGCTGTCAACTTTTAAGGTAGTAAGGGAGATGTAGTTGGTGAATTTGCCA
GAATTACATTTTTACTCTATCAGATATACTTTGCTGTGTGTAGGAAACTAGGAACTGAAA
CCATAGATATAGAGCTTGGGTTGGGCATCTTATGCCTACACTTTCTTTCATTGATCTTCC
TCGGTCTTACATGCATGCTTTTTTATTTTTCAAATACCCTACAGTTTTGTTGTTCAAAGA
AGTCTAGTTTAATTAGGAATGTCATTTGTGTTTGTGCAATAAATTTTCTTACCGGTATTT
AGAGATTCTTCAAATGCTCGAATTAGCTCAAAAGCTGGTGACATTTATCATGTCAGCGAG
GAAAATGATTGGCAGTGTGCTGCAGCACACCAGTATTATGTTCCGCTGTAAATTTTTGGC
ATAACCTGAAGTCATCTTTTCTTCTACATTCTTATGCTGCAGCTTTATATGTTGATGTTA
TGCTGAGGCATATGTGTAGACAGTACAGACCCTTTCAGTTTGTGAGACTTGCGACGAAGC
TATATATCATGACTGTTGATTATGCTTTAGTTGACACTACCTTGCTTCCTTCTAGGGTGT
GGCTCCAACCATTAGGTGTAGCATGTTCTAAAAAATTCTTTATTTCAATATGTGTGCTAA
AACCTTGTTTGAGGCTGGATCCTGTTCATGGATATGGTACTATGATGGCTGTTGCTGTGG
TTTCTAGTGTTGGGATGCAATATGTTCTTTATAGGTTACCATCCTCAGTTTCAGCATCTC
AGAACACGGTTAAGGAATTTTCCTTGAAGTACTCAACAACTCTATATGAAATGCAGCCGT
GCTATATGCAAAGATCGTTTTAAAAGGTTCTTCTTTTACCATTTCCATGTGCATAGGGTT
TAGTCTTTCTGTGCTAGTTAAGTTAAGCTCTTCACATAATATAATGTTCTGAAATTTTAT
ACTGATATATATATTTATAATTTTAACTACAAGCTTTACGAGAAATAAATTATTTTATCA
TAGCATTAGCAATCCTCTTGCCAAGGACAGTCATTTCTTGTGAAGGAACACATGAAGCAT
ACATGTGGTCTATCAAATAGTTGATCAACTTTGTCTTGTGCTTGTGGTATACCTTTATGC
TATATACTCTGTACTGCTTTCAATTGTCTGTATCAGTTGCTTAACTTGCTTTGCTTTTCA
CAAGTTAGTTTGCTCTTTGTTCTTTGGCAGGCCAGGATTCTTCAAGAACAGCCATCCGAT
GTACCAGAAATTCCTGCTGCTCAGGAGCCAGAGACACTCACTGCAGCTGACTACCTACAT
GAGATTGACCAACTCCGGGCCAGGTCCACTTATGGCGATGTCGACAGAATGAGCCTTCAG
GATGGAAACACCTCCTGTCTTGCCACTTGCAGCACAGCTGACATCGATGATGATCCATTC
AGAGCCTCCTATTCGTATGATGCAGAAGAAGACATCGGGGATGAAGAGTCTGGTGGCTTC
ACTTCTTGCGTTGGAACAAGGTGGTTTAGAGCTCCTGAGCTCCTATATGGTTCAACCAGC
TACGGTCAAGAGATTGACCTGTGGTCACTAGGATGCATCTTGGCTGAGCTTCTCAGTTTA
GAGCCCATGTTCCCAGGCCAATCTGATATTGACCAGATCGGTAGAATCATCGGCGTCCTG
GGCAATATCACAGAAGAGTCCTTTCCTGGCTGTTCAAATTTACCCGATTACAACAAGATC
TTCTTCAGCAAGGTTGAGAAGCCTATGGGCCTTGAAGCATCACTGCCGAACAGATCTGCT
TCTGAGGTTAGCATAGTAAAACGGCTACTTTGCTACGACCCAGTAGAGCGGGCCAGTGCT
TCTGACTTGCTGAATGATCCGTACTTCACTGAAGAACCCTTACCCGTACCTACCGAGGCA
CTACAAGTCCCGGCATCAAAGGGCGAGGACGACGACAGCTCTGTGGAAGAATGGGGTAAT
TACAGGGATGACAATTCAGATTCGGACATTGACGAATTTGGTAGCATGGATGTCACCAAA
ACCGACAAGGGTTTCAGCATACGCTTTTAAGTGATAAAGAAAGATGCCCACGGAAATGAA
ATCTTATGTATGGAACATTGTTGTATTCTCTGTTTGGAACATGTTGTGTGGGGAGTTCCG
GTAAGTTGTATCTCATAAACTGAGATTATGCACAGCAACAAGCATTCTATTGGTGTGAAA
TAAAGTTGTACTCCAACCAGCTATTGTAGTTCTCATTGTATGTACATGTGTTGGTGTAGT
TCGTCCATTCCCAGAACGCGAAACATTTGCAAGTCGCCACTTCTGAATGCAAGCCTTCAT
TCGCCCCCTGACAAAGATGGGTTCGTAGTCCCTCAGTCCCAGTATACTGTAAGATATACT
ACATAATATAGAAATATTTTTTGTGATGAATTTTGTGGAACTATTTTTTATGTGTAATCA
AGTTCTATGGAACAAATTCGATGCTGTGCATGTTGATATTTTTTTTCTATAGACTTGATC
AAATTTAAAGAATTTTTACATGTGAAAAAAATAAATAAAGAAGTTTTACATGCAGAAAGA
TAAATAAAGAAGTTTGACTTACTATTTGACATGAGCGGTGGTTAGGGCGCTGGGAACCGT
CTGATCTCATCCCCATTCTTCTCTGATGCACACCCGTTCTCCCTGCGAGCGTTGCCCCAG
CTGAGCGGGTCCCCCATGCGCCTCTGCCCCTCCCAACCATCTCCCTCGTTCCCAGCTCTG
TCATGGTCGGATCCCCGCCAAGCTTGGCCATGGTTGACACGAAGCCTCCTTCATCAGTGG
TTGAAGCTCCCCGCCCCGCGGTTGCAGCATCTGGTGCACCAACCCCCTCCATCCTCGTCG
CCGAGCTCGCCGCAGGGTACATGCTGCAGGCAACCGTGATCGTCTTCTTCCCTAGGTAAT
CTAATTTTACATGTCACCGTTGTAGCAAAACAACTCAACCTTTGTAGCAAAAATCAAAAG
ACATTGAAAACAAAAAATTTGAGTGCTTCCAGTGAAGTGATGGATCGAAGCAAAAAAAAT
CAAAGACGAGATGGTAGCAATAACGAAGACGGTTGTAGCAAAAATTTGTAGTGGTTCCTG
CATGTGGCTTCGTGGCAGCAGCACCACCGTCGCCGCCTCCGCTCGCCGTCAGCGGAGGCT
TCCACCACCATATTCAGCAAAAAAAAACACAACAACGAAAAACAAGATTCACTGGTTGTA
GCAAATTGAGAAGTTGGTTTCAGCATTTGTGGCGGCGGTTGCAGCAATTTTAGAAGCTGG
TTCCAGCATGCCATGACGGTGGTCATGGCAAATTGGTTCCGGCACGCCTCGGCGTAGGTC
GTAGCAAATTCAGAAGCTCGTTCAAGCATTCCAGCGAAACGGTTGCAACATTTAGTGCGC
GATCATCGCGGTAACCGCCTCGTCGTAGCAAAAATCCTCCAAGTTTGTAGCACTTTGGAT
CACCAGTTGTAGCATATTTTGGTGTCGGTTGTAGCACCACCAAAATCGCTGGGTCGTTAG
CACCTCACCTCGTGCCGTTGTAGCACCTCGGCATGCCGCTCTGCTCGAGGCTATTCCAGC
ACCACTGCCGGCCGGTTCCAGCAAAATTTGTTGAAGCTTTTTCCACCGCCAATTGAAGCC
TTTTCTATGGCGGTTGAAGCTTTTCCAACTTACGATCGAAAATCATCGACGACCGTCGCC
GCCGGTTGCAGCACCGCCGCACATCGTTGTAGCAAAAAACCTCGCTGGTTGTAGCAAATT
ACGCGACGGTGGTAGCACAAATCATCGTCTCCGTTTGGTTCCAGCAAATAAGTTTATCGG
TTGTAGCATCCCTCGTCAGCGGATGTAGCATCTCGCGTCGTGGTTGTAGCATTCAATAAA
AAGGGTGAAGATTTGTATGGCCACATCCATGGTGGTTGTTGCATCGGCGATGGAAGCTTT
CGAATCAAACAACGAAAGCTTTCAAAAAGAATGGTTCAGCATCACCTTCATTGTCACACG
CCATGGCTTGCCGCGCGCCATCGACGATCACCAGCGTCGCGCATGGCCTCTTTGCTGCTC
TTCCCACCGTTGTCTTCCCCACCTCGTAGTGGCTCGCCCTACCAGCAAGGGCTCGCATGC
CCGCACGCTGCATGTGGTGGCGGAGATGGAGAAAAGGAGCAGTTGCCCCACGTTGTGAGG
AAGAAGAAGAAGGCGACATGAAAAACGATTCGGTTCAGGAGCGCTCCAGCGACGAACGAC
CAAGAGCGATCGTGAGGCTCGCAAGCGTCCGACCCAATCTTAGGCCAGCAGTCCGGCCAC
AAACATTTACCATAAAGAAATGAAGAAGTTTGACTTAAGATAAAGTGAGAACTTCAAATA
AATATTTAGGACACACAGAGTAGTTTGAAGCAAAACTTGTAGGTATCCGGCTTGCAGCGT
GATAAAATGCATCGCTGGGTGGCACATACAGTACATCACAAGCGCAGAAGTAGCAAACTC
GCAAGCCTATTTTTCAAAACAAAACCACTTTATTAAATCGAAATGCTCCTCAAACCAATT
TCATCATCTATTAAAAGAGGTACAATTACGCTGATGGGCTCCTCTAACCAATCATAACTC
GTAGAAAATCTAGCTAAACTAGCAAGATCATGAGCAATATTATTAGCTACCCCATTACAT
TGCTAAAATCTAGTGACGGAAAAATCAAGCAAGTGAAAATAATCGTTTAAGAACTGAAGT
CACTATTCCTGCCGAACGTCCTCTAATTCTTCATAGTCTGAGTGACTTCCAAATAATAAT
AATTAGTAACAAAGTGATTACATCCCGTCCTTTGTGCCACTAAAAGGTTGTACCTTAACG
CTAAATCATCAACACACTAGTCAATTCTTTTAGTTTTCACCAACAATGAATTTTCCACTA
ACATCTCTAAGAACTGCACCGACCAAACCTCTAAGTAAGTCTTGTTAAAAAATCAACATT
AAGTTTAACAAAACCCAAAGGTGGCCGGGTCCAACCCCCTCTCTTCATGCTGGCCTTAGG
GGAAGGAGCCATAGCATAATTTGTCGCCAAGGTGCAAATCCCAATCTAATTTATGTTTGG
GAAATCTCTTTACGGATCAGTTTAAATCTTTCGCACCACAAGTACCAAGAGGTGATGGAA
ATCATAAAATAGATAGCTCATGATCAGGCATATGAAATTGAAACTCAAGGACACCTGTGG
GATCATTAGAAGGGGTGTCTAGAGGGGGGGGGGTGAATAGACCACTTGTAAAAATAAAAC
CTAGCATTTTCCCAA