morexGenes - Barley RNA-seq Database

Contig contig_1578274

Source Contig contig_1578274

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1578274 (4594 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_1578274

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_17841	1	1289 bp	MLOC_17841.1	Available	Available	LOC_Os01g46210.1, FRAME:-1, EVALUE:9e-145, 13101.m04747 protein GDSL-like lipase/acylhydrolase, putative

CDS Structure of MLOC_17841

Contig Sequence (4594 bp)

>contig_1578274 4594 assembly3_WGSMorex_rbca.fasta
CCCCCCCCCCCCCCCCCCCAGCCTTGGACCCAACTCTGAAGAATTTTTTTGGGAGAGGGA
TTAGATGAGATTTTTCTTTCAATATACACCCATAAGTACTTATGTTTTTGCCTTTGCCTT
GGCCCCTCGGCAATTTCTACCCTACTCCACCACTTGTAGGTAGGTCGTTGATCCTGTGCC
GTAGGTAGGTAGGCCTGGTAAATACTTATGTTTTTGCTTTGGCCCCTCAGCAATTTCTAC
CATACTCCACCACTTGAAGGTAGGTCGTCGTCGTTGATCCTGTGCCGTAATAGGCACTGC
ACCACAGCTCCCAGCCGCCACCAGCAATTTTCCTTCCTGCACGAAACGCTTCCATGCATG
CATAGCCTGGTACATGATTTTTTTAATGACCTATTTTCACGTGTGCTATTCTGGCCGTCT
GTATGCCTTATTGATTGATGAAGTCATGTTCGTGTGGGGTTGAGTCCATGAGACAGCTGC
TCATGTGAACCGTAATGCATACATATCTCCAAACCAACTACGATAGACCTGGAATGCCCA
GCAGCGCAGCATAGCCGTCCATCCGGCACAAGCTTGGTCGGTTCCACCAATCGTGCAATC
CCGGCGGCATCCATTAGCCCCGTCAAAATCAAAACTTCGACCAGTTGTCTGCAACAAAAC
AATGTCAGGCACCCATTACGCGCTCAAAACGACCAGGCAACAATGCATTTGTCATACACC
CATTATGCTCATATATGATCGATTTATCATCATTTTCACACTAAATTTATCCCCTGGATA
TGCCAGAAGGGCAAGTATGTGAATCCAACTGGCCTCTGGTGACAGCAAAAACGTTTTGAC
ATCAACGGAGCAAAGGGTACCGCACTACCTTCACAAAGCGGACGTGTCCCCTCAATATCT
TGATCATGGTATGCCCACGACCTAATTCGTGTATGTTGGCATGTTTTTGGTTGCTCATGG
TCCTTTTAACTATTATAACACACATAAGTAGGACAGTCCAGATGGGTCACCCCATGTGAA
AAAATCTAGGGGTAGATGATTCATGGCATAGCAAACATGATATATGTATCAAATCGTGTG
AGTCAGCATCGGAACCGCTTATTTTGGGTGTGATCTTAATATGGGTACAATTGGGGGTGA
AGAAAACAAGGCAATAACAACTTTAGAGTGACAAGGTGGTGGTAATTAGAGTGTGGGAAG
GAAATTGAGGGAACCAAAAGGGCGGTAATTAGAGAGTGGGTGGGAGAGAATGGGTTAGAA
AATAGCTGCAAGGAAAAAATGCAATAAATAAACATAAATTCAATAAAGCACATTTAAAAT
TCATTCTTGCATTAAGATTTAACCAAGTCTCAGTCAAGTGGTATAGCATATATAAGAAAA
AGAAATGATAAAAAAGAAAATAAATTATTTATATGAATCTTCATGCAAGATCAAAGAAGT
ATAGCATTGACTGAGACATAACGAACTGAGACTTAGCAACGCTGATTAAGAAATAGTTCA
GCAAAGAAGATGTAAAGTGTAAACTGAATGTCCTATTTGGGCAATCGGCTTCTATTCCAT
ATACGCCGAGCATCTTGCAACAACCCTCGGCTTATAGAGCAAAGCACACAGTCACATAAC
CGCCAAGCTATGTGGAGTGTTTTTATGTATGCCGAGAAAGAACTCTAATCCGAGTGCTTT
CTAGAAGCTATGTGGAGCGTTTTTATGTATGCCGAGATTCTTTCCTGATTCTCCGCTTAG
TTCTATCTACGCCAAGGTCAGTATTTGTGCCGTGCTTTTTAGATTTTGAGACTCGGTGCA
CACGTATATAAGCCGGGTAGCCGTGAAATGTCACTTGCCTTACAGTGGGATATTAGGCAA
ATTCAATTTTTTTGTAGTGACTATTGCCTGGCTCATATTGTAATTTTTTGTCCCTTACTT
TGTGTGAGTTATCTTTCTCGCTCTCCTCAAGTCTAAACCCTAGACCCGTCCCTGCCTACA
TTTATCACCCAGAAAGTCACAACATTCAATTTCTTTCCGGTTTTTGTTGGGACATATAAC
TGACTACATTTGCAATCCCACAATTTCAAGTTGGTGCATCTGGCATGCATTCCCTTTGAA
TTTTCACCGAACATATCCATTGCGTAGAAGAATAGTTCCTAGCTTCTCTCAAATATAGGC
GTGGTCCAAAGCAATGAAAGCATGCATATTCTGCATTTTAACATTCCTGTTTTTTTTTTA
AATTCCATGAATCAAAAAGACCTTATAGCAAGTTACCGTTGGGGCAAAACATCCATACCC
GCGAGTCCAGTCTTGAGATGGTTGGCACTCCAACTATACTTGGGTTGGGTGAGGATATAT
TAGTGCACGCGTGTTTGCATTACATTACATAATCATGCATGTGGCATATCCAACCATTTC
TTTCATGAATAATTGATAAGAAGGTACATGAATAAGAATCTGAAGAAGCGTATCAGATCT
TGGTGGCAGCAACAATTCTTCAAGTCTCAGAAGTCATTATCCTAGGAAGCATGGAGCAAC
GGGATGTCTGCATACGGGCCGTTGAGCACCCCGTTGGCGATGATTCTGTATGCCTTCTCC
GTCATGTGAACCTGGTCCTAGTTAGCGAACCTGGACGGGTCCCGGCAAACCTTCGCGTTC
TGGTCACACCTATGGCCAGTGCCGTAGGGTCCCTGGCCACCACAGCACGCCACCAGAGGG
CTGTCGATGCCATTCCTGCTGGGATTCCGGACGAACTCCATGAAGGCGCCGTAGTAGTCG
GCGTAGATGATCTTCACGCTGGGGTTCCGGGACTTGAGCCGGCCGACCTCCTGCTTCAAC
AGCTGATTGTGCCTCCGAGAGAACGCGTTGAACCACGCGAGGCAATGGAACTGATCGTAG
TCCGCTGATGCATTGCTCTTATGAATACTAAGGTAAGCCGGCACGCACCCGATAGGGAAG
TTCCCCGGGACAAGGATCGTCTTGGCGCCAAGGTTGATCACCTTCTGCACGCCGGCTCCT
ATGCGGCTGATAACGTCCGGCATGTACCGCAGGGGCGTATTTCTGTCCTTGCGGCGCACA
GGATCGAAGAACCAGAAGTTGTAGTCATTGCCACCGATCTCGCCGAAGACGACCAGGGAC
TCGCTCAGGACACTCTTTGTGGCAGCTGATCACAGCAAAGAGAAAGGAGTAAATGGACCA
AGAACACATGCGTGGGGACGCAGACATGTGGCATATATATATATATTTTTTTTGCAGATG
ACATGTGGCATAACTAAAATATGATAAGCTGACCATAACGTATCCTTTTGCATGCGTTAC
GTACCATCTCGTGGAGCAATCCGTGTGAGCACTTTCTTGAAACTAGCGAGCTGATCGTGG
AGGCTCCAAGAAAACGGTACACTGAAGTTATACCTGGACTTGAAGTAGTCCGGGTTCAGC
GCCATAGCGCCGAACACGGCAAAGTTGGCACCGGTGGGGAACTGCCCCGTCTTCTCCTCG
GGCAAGCTCGGGGGCAGCAGCGGCAGGCCCAACGCTTGCGCTGACGAAACATCACACACA
AAATTTAGCGCGCGTACGAAATTGAACTGTTGGAACACACATGCATGCACATGTACACAC
CATAGAAGTCGATGATGAGACGCCCGTCAGAGGCGCGACCCGTGGGGTGGTGGAAGTAGG
TCTCTCCATAGGGAGGTACCGAGGGTGGACCTGGCGGTCTGTTGCGGACGATGTATGCAA
AGTTACCGGTGTCGATGATGGAGTCGCCGAAGGAGAAGATACGCTTAAAGCAGCCGCACG
AGCCAAGATCCGCGTTGAGCAGCAGGACGGCAAAGACGAAGATGACGGCCAAGGAAATGG
AGTAATGGCGAATGGAACTCCGCATCGTAGCTATCTATCTGGTTGCAAATAGAAGTTTTC
CAGATCTACGTTTCGTTGAGTATTCGACATGAGTTCCCTTCATCCCCATTTATATTAGAT
TGTTATATGTGGTTGAATTTTGTATATCATGATGTCTATCAATTTAATAAATGCTATTTT
TTCAGCAGTGTGTATCGTACTACCCCACAATTGTTTCCCTAAAATTATATTTTTGGCGCA
TTGTTAATATATTGCTAAATATCATATTCTATGCAAATGCAGTCTTCCTAAAATATAAGA
ATGGATTTCTCTGGCATTAATGCATGCTCTATATATGGGCCGACTATTGATTAAATTATT
TAGATATTCAGTCTGCTGACTATCACCTATCTAATTGGGATCCAAAGGTCCATCTGCCTT
CTTCTTCCTCTGCTTAACAGGTCACTGAATTTTGTGACATGACATCACTTCTTTTCCAAC
AAGACTATATACTAAAACTAAAAAAAATCAAAAAAAAAATCAGAGAATAACTTTGGTATT
ATCATAACAAAGAAACAAAATGCAAATAACTTTAAAGAAATGATGACAAAAACTTGACCA
TAAATTGGGTATTTACACATTTTGCATGAATAAACTTATAATAGTATAATTTTCAGAAAA
TAGTATAATTTGCACACATATTACATACTCCCTCCGTTCCTAAATATAAGTCTTTAAGAA
ATTTCATTACGTGACTACATACGAAGCAAAATAA