Contig Data
morexGenes
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Map Locations of contig_1578116 (2795 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_1578116

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_17803 1 1342 bp MLOC_17803.1 Available Available LOC_Os03g02400.1, FRAME:+3, EVALUE:3e-50, 13103.m00196 protein plastocyanin-like domain containing protein, putative, expressed





CDS Structure of MLOC_17803






Contig Sequence (2795 bp)

>contig_1578116 2795 assembly3_WGSMorex_rbca.fasta
GCTTAGAGCATCTCCACCCGTTAGGTGGCCCAGGGGCTGAAATAGCATCATTTGGGGGTC
AACCGACGAAAATAACGGCTTGAGGGGCTCAGGTTTTCAGTCCCCAAAGGTCGGCACCAG
ACACCTTTTTTAAGATAAATTCGTTTAAATTGAAGCTGAAATTCGACGAAACTTATATGA
ATTCATTGAAATTTGTACAAATTTTAAAATAAGTACATAAAAAAAAGAAACATGCCGTTG
GCGCCGCCCTCCTGCCACGCCTAGTTCATGCCGAGGAGCTGGTAGAAGGCTGTGTAGTCG
TCATCCTGCGCGCCGTCGTCATTCCTGCAGCCCTGCCCTGCGTCATCGATGCGGGTGGGG
GCAGTCTGCGTCGGCGTCTCCTTCTCGTCATCGGAGAGGACCGATGACGCCGGCTCCTCG
AGGCGGCGTCACGTGTGGCTCAATTTAACTCCGTCTGATCGATCCAAACGAACAAAAAAC
AGAGAAAATACATGCCCAGTTGGCTCGACGGGTTGTAGTTGGTCTGAGGGAATACTTGCC
GGAGGAGGTGGCCGAGAAAATATTTGGTGCACCAGAGCTTGTAGTGGTACCGATGCACCA
AACTTACATTGTGTTTTTAAAATATTTAAAAAATTAAAAAAAAAATTAGCACACTCAGGT
AATATTAATGTAGGTTGTCACAAAATCTCAAGTGAAAATTTAAAACATAAGTTGACAAAC
AAAAATAATAAATTTAACGCTGAATAGTACGCAACATAAGTTAGGCTTCAGATTTGATCC
ATTATCACACTGAAGTCGAATTTGTCACTTTTTATATCTCAAAAAATATTTTTATTTTTT
ATATAATTTTTTCTGACATCATACGTTGATGTTATTTTTTTTTTAAGAAAAACATCGTAT
GACATTCGATATAGCGGTAGCATAACAAGTGCGGGTGCATCCCGGAGGTGGCCGACCGTT
TTACTAGGCACGGCCTGCAGTGCAGTGCAGCGGTCAAACCCAAACCCAAACCCAACGCCA
AAGGAGGCGAATCCATTCCAGACGTTACCTTTCCTCCCCTTTCCTCCCCTCCCATCATAA
ATAAATGCTACACTGCTCATCCATCCATGTGCTCCTCCTCCTCTTCCTCTAGCTAGCCAG
CCACAAGACCCAAGACCCAATCCAAGCTCGCTCGCTGGTGCTGTGCATCCGGAGCTTGAG
CTGAGAAGCAGAGGAGAGGATGGGCATGCCGACTCTGCTTCTGCTTCTGGCGGCGCTGCT
GCTCCTCCTCATGTCCATGTCCATGTCCGGCTGCTCCGCGGCGGCGACGTACAAGGTTGG
CGGGCTGGACGCGTGGGGGGCGCCGCCCTCCACAAAGCCGGACGTCTACATCCGCTGGGC
CAAGTCCGTCCCCGTCAAGCTCGGCGACGCCGTCTTCTTCCTCTACCCGCCCAGCCAGGA
CAGCGCCGTCCAGGTCACCGCCAAGGCCTTCGCCGCCTGCGACGTCTCCGACCCGCTGCT
CAAGCTCCACGACGGCAACTCCCTCTTCAACCTCACCAAGCCGGGACGGGTCTACTTCAC
CAGCGACGCCCCCGGACGCTGCCGCAAGGGCCAGAAGCTCTCGCTCGACGTGCCCGCCGC
CGACGGGAAGCTGCTCAAGCCGTCCGCCGACGACGAGGCGGCTCTCAAGGCGCTTGCGTC
GCTGCCGCCTGCCGCTGCCCCCACGGAGGCGCTGCCATCGCTCTCCCCCGACGACGACGA
CGACTCCGGCTCCGTGCCCCGGCGAGCCGGATCCATAGCTCTCGCTGCCGCCCTGTCTCT
CGCCGCTGCTCTCATGCTGTGAGATGAGATGTAATCTTTCTTGTTCATCAAATCAAATCA
ATTCATTTTTATTTTTATTTTTTGTTTTTGTCACAAGAAGAAGAAGAAGAAGAAATTTAT
TAAATTTGTTTGGATTGGATTGATGTGGATGATCTTGATTTCTTCGGATCCCCAATTGGA
ATTGGCCTCCAATCCAACTACTCGTACTCGTGCCTCGTGTGAGTGATGCTCATCTCTTCT
CTTCTCTTGTCCATGGGCTGATTAGATTAGATTAGATTAGGCTAATCTCTTGTCCAAACA
GGACAGGACAGGCACAGCTCATGCGCACATGGTGGCTGCCCCACCTTTGTTTTTGTCGGT
GCATCAAATCAAATCCACCTCACCTGTCTGTCTGTCTGTCACGCCAAGGAATTGAATTTA
TTTATGGACCTAACTAACTACTCCTACTGTAGTAGGCAGCCACACCGCATATTAATATGC
GTTACTGTGCAGCGATTAGTGTAGTGTATGTGATCTGCGGATTCCTTGGCTAGCTAAGCT
GGGCCTCATGTACTTTTTTTTAGGTTTGGCCTCTCGCATGAGTATAACAGTCACATGCAA
TATTTTTTTTGATGTTTGAAATTTAAAAAAAATTATCTATAAAACCGTTAATTCAATCGA
TGATCCGTTTTTATTATTGACTTTCTCGCAACGAGTTGTTCCAAACTAGATTCCATATCG
ACATATGTTTCGTCAACTATTTTTTTCGTTCACATTTTTTGACCGAGTTGTCATATTATT
AACCACTTACTTGCCTGAAAAAAATAACTTGATTGACACTTTTTAATGTTGTTTCATACA
AAGCCTTGTAGCAGTTTTCATTATACATGATATCAAAGCATGTCATAGATTGTGTTGCCA
ATTTCAAAATAATGTCCCTAGCAAGCCTTTAGTTGGTTAGCCAGTTGATCAAGGANNNTT
AAGGTTTTATGACCATATGCAAGTATTGTCACTTG