Contig Data
morexGenes
Links



Map Locations of contig_1578078 (5600 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1578078

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_17796 1 1198 bp MLOC_17796.1 Available Available LOC_Os07g38110.2, FRAME:+3, EVALUE:1e-156, 13107.m03935 protein tic20, putative, expressed





CDS Structure of MLOC_17796






Contig Sequence (5600 bp)

>contig_1578078 5600 assembly3_WGSMorex_rbca.fasta
CGCGCTTTATTATTAGGGGAGATACTTGAGAATCAATAGAAATCAGGACTAATAGTCCAT
TCACTTTCATTCAATCTCGTTTTACTCTGAGGGCTCCTTTGATACAAAGGAATTTCATTG
GATTTTTGAAAGATTTGGATCCTTAGGGTTTTTTCCTACGATGGTCGTTTGATTCGTAGG
ATTGAAATCCTTTAGAATTTTTCCATAGGATTCGTTTGTACTACATTTTGGAGGAAAATT
TCCATCCACTCAAACCTCTTTATAGAATTCCTTTGTTTTTTCTGTGATATCAAATACACT
TTCAAATCCTGTAGTGTAGAAAAAGACATGCCACTCTATTCCTACGTTTTTCCTATTTCT
GCATTTTGAGAATCCTACGAATCAAATAGGCCTAACACCCTGGACAGGGAAAGCGGGGGG
ATGAGTGCCACGTTGCGTCCCATCCTCTCCCTGGTGCGAAAACTAGCTCGCCACTCCGCC
CCCTCCGGCCCTCTTATCCTCTTCCTCTTCCTCTCGGGACGGCGGTGGCGCCGAGGGCAC
CGAGGCCTCATTCCACCTTAGCACGCAGGTTCGTAAGATCGCTGCCATCCTCCGCCTCCT
CCCCTACCTTCTCCGTCGGTGACGAACCCTAACCTGCCTGGATTGTTCCACGAGTTCTGC
CATCATCGCCTTTCCTTCTGCCGCGAGCAACTTAATCCAGATATTTCATTTTGGGATCAT
AGTCCTGTCGATCCAATCTATCGCGGATTCGCGTGTCGCGTGGTGGAATGCTGATGGCTG
CTTGTTTAAGGAAAGAAAAATGGGGGTGCCACTCAACGTAACCCACATTGCCCATGGTCA
TGAGCCCACCGCTGCACTTGGGAGGAAATTGCCTGTGTTTTTAGCTTCGGCCCGGTGGCT
GGTGTCCATTTTATTTATTTGTTTGAGAAAACGAATTAATTTCGTTTTCAGAGAACGGAC
GAATTACATATGTGATTAATAGCTCCGTAACCGTGTGAGTTCGGTGAAGTAGTATGTAGC
TAACTTCATTTACCTGCTTATCCAGGTAACCGTGCTTTGTGCAAGGCCGGGCTTACACAA
AAATGGTTCTCTGTCAAGGCTTATCTGCTGGGCATGCCCAGCTGCTTGCTTTTCCTGCTG
CTAAGCCTCCTCTCTTAAGAAGATCTTGCATTCGTATTCCAGCGGGATCGCCGAGTGTAA
GAAGTGCTGGGCTTTCATCCGAGAGGAAGAAATTTTCGGTGCAAGCTGTACGAGGTAATG
CATATAACGATCTAATTGTCTTTTTTCTTAAGTTTCCGGCAATCATGATGTTTATGCTCT
TCTGAACATATACGGTAGATTGTCCTTAACTCTTAGCCCCCCCAGAGCAAAGTATACTGA
TACTTTGTCAGGTAGAGGATAGAGGAAAAACATTTTGCCTGCATCAGCACCTCTTCTTTT
GCATGCTTCTGGTTGGCTGGTAGGGCAGAGAATGGGGAAAGTCTGCAACAAATATTAACC
GGCAATAGCAACACAGGAAATATTCGCACAGAGATTCTGCAAAATTTAATGGTGAAAAGC
ACAGGAACATACACTGCTATCTATCTCGAAGGAGTTCTTTAATAATCAGAAAGGACAATA
AGGTGTAGATGTAACACCGTTATCTGGTCTCATTACAAAATTGGTGAAGATATTATAAGG
ACAATCTCATAATGACAATATTAAATTTGTTACTTCGATCGAATATGGGGAAATCGGAAA
TTCAAATATAAGTTATTAAGTGTATAAAGTGCATAAAAAGCAGAGTTAGGCGCCAGTTAT
ATGAATCTGAAGGCTGGATGTAATACTTTCAGTGTTCCATGATGGACTTCTTTTGAATAT
CCATAAACTTCTTTAAGTAGATAGAATTCTGCTCCAGGACTGGCATGGGTGCGTAGCACA
AATGCAAAATTAGAAATGCATGGTCATGTTTTCCATATCCAATCTAATCCGACACTGTAC
ATGTCATATGTACCGTTGGGACATTAAATAAGTTATTAAATCTAAACAAAAAGAAGGAAA
AACACCAAAATGTTAATGTTCATATGGGTCATGGTCGTAGTTTTATATTTCTTGGTGATC
CTTTGTACTAGAACCCTGCCGTAATTGGCTTGGATGAGTCTTATTAGACTCCTTTCTCTT
CTCAATATAATGATGCACAGCTCTCTTACGTGCTGGAGGAAAAAAATGTTGATGTTTGAG
TAAATTGACCTGCAAGGCTGCAAGTATCATGCTGAAATTGACACTGTCCATGAATTCTCA
GTTATTACCTTTTGTACAATGTATAATTCTCACCAAGGACCCCCTGCAAAAGCATATGTA
GCAGCTATTATACTTCTGGTGATAAATGCCAATGTTATTTCATCCTTCTACAAAAAGAAA
CCCCCATTGGCGGCAAATACCAGCATGTAGATGACAGACATGGGGCAGAGCTAGAATAAG
TCCAGTTTTCAGGCCAAAACATCAAGTAATTAATACCACCTCCGTCTCAAAATAAGTGTC
GCAAATTTAGTGCTAAGGTAGTACAAATATAGTACTAAGGCAGCAACACTTATTTTGGGA
CGGAGGGAGCACATACTATCAGGAAGTGTTGAGTGGATGATTACTTAAAAAAAAAATCAT
TGGCTCTTGCTGTTGCTTTGCTGGCCTTGCCATGCGTCGCCAACCGCTGGGCCCCTCTTT
GCTGTAATGCTTAGCAGTTACAATTGTTAATATATAAGATTAAGTTCATGGTTTTAAGAT
TTCTGCCCCCTTGATTACTTGTAAGGAGCCTACGTTTTTTAGGAATTTACTGTGTAAAAT
ATGGTATAAATCGACATTTCAGGGTTAAGCCAGTGGCATGAAGTAAACATGAAAGATTAT
TGTTTACTGATTAGTAAATCAGTCTAGTAGATACCATAATGAATTTATAATCCATTGAAG
AGAGCTTACATCGCTCTTTGATATTTGCTAGACCAAATATTGGAATTGAGACAGTTTTGC
AATATAGTACGTGTCAGCTTATATCTTCTTGTTAGGTGTTTTCTTTATATTTCATTTCAT
CACCTTCTTGGGTTTTGACATTTAATTCATTCTTTGATTCTGATACTTAATTCATTCTTT
GATTCTCACATTTCACTGTATATCTTGCAGCCGGTACTGGTTTTCTTCACCATGACATGC
TCACATCATTTCCGATGGAGGGTTCGATCAAGGGCATTCCATCATTATTGACCCTGCAGA
ATCAGCGTCGAAGGTCGGATGTTGGTTGTCGAGCTTCCTCTCTAGCATCATTCAGCTACC
CTGAATTGACTTCCAAGCCAAGATGGTGGTGGAGAACTCTTGCATGTGTGCCGTACTTGC
TGCCACTCCACAACATGTGGTCGTATGCCGATGTCATCTACCAGCTACACACGTACTTGC
AGGGCTTTTCATTGGTTTATACTTTCATCGACACCATGACACTGCTTCCAGGGTGGCTCT
TGCTGGTGATATTTATGACTGTGTACTTCTTCGTGGTGAGACGCAAGTGGTCACCCCACT
TCATGAGGTTCCATGTGATATTGGCCATCCTCCTGGACACTGGTTCCCAAGCAGTGGCAA
CAATGTGCACCTGGATGCCCAGCTTCGTGTATCAGGGGAAGCCCATGCAGTATTTCTGGA
TGGCCATTGCTTTCATGCAGATCTTCACGGTGCTAGAGTGCATGCGCTGTGCTCTCTGTG
GGATGTACCCGAACGTTCCTTTCATATCTCACACGGCGTTTATCCATTCTGATCTGAATC
TCTTCAGGTAGCCACCTGCTCGCCTTGTCGGGTTTTTGATATCAGAAGGATGGAAAGTGA
GATGGAGGTGCAAATAGGTAGTACTTTTTTTTTTGCGGTAGCTACTTACAGTTCTATAGA
CTGTTTTGTTTATACTGAAATTTTGAAGTCTCATTGTAATGGCCAGCATCGTGACCTTTT
TCTGTTACGACAAAATCCAAACAATGACGTGATTGATCATTGCATCAGTTGAATTGCTTC
AGTGTTAGTTATCTGCAATTTTTTTGTCTAGAAGCCTGTGAAACTTTGAATACATGTTTC
CTCGTGTGGTTTGAATGGAACCCCTGCTGGTCGGGCTTGGCTAAAATCTGTTATCAACTT
CGAGAAATGAACAGCGGTGTAGGTATGGCACCCTTTTGTCCTGCCACATTTTCATTTCTG
AACTTGGCTGAAATGCTAGACTCCGAACATTGGTGATGACAATTATCTCCGCAAACTGTC
GTTCATTTTTCTGCGAAATGACAGGTGGCTCCCTGGGGCCACGAGCGTGGCGGAGGTGCT
GCTCCTGAGGACAATTTCAGTGTTTTGACCTTTTTCTAAAGTTGAGCAAGATCTGACCCT
TTTTCTATCGCCGGGTTCGATGGCGGTAGGTTATAGCTGTCTATCGCCAAGTGTTCGATG
GCGGTAGGTTATAGCTGTCTATCGCCAAGGGTTCGATGGCGGTAGGTTATAGCTGTCTAT
CGCCAAGGCCCCTGGCATAGGAAATAGACACAATGTAACTGCACCAAACCAATCAAAGTA
CCAATGTTCAGAAAAACATAATTCAGTGGACATTACAAAATTCAGACATTTTTAGAACAA
AAGCACGGATTCATGGCCTCCATTGAATAAATATATGATCTTTCACGTCCAAAAACAAGA
TTTTTGGGCGATCTAACAAGCAAACGGGTACCTAAGATGACCAGAAGCCATATGATCAAC
ACAAGGTCTGGCCTTTCCATACGATATCCAGCACAACATCACTGCTAGTTCAACCCATAA
CCTTGATCCAAAGCTCCCATGAAACCCTAATTTTGCCCTGCTGGTGCTAAAACCATACAT
TTCACCATCCGTCAGCTAAAACCCTACACGCATAACCCATCTGTGACAAAGGGGGGAGAA
AGAGTCCAAACTCTACACGCAGAACCCATCTGTGACAAATTCGCACGGTCGACCTAGGTG
ATGCACCGTACAGGAGCAGGTTGGCATCAGGCGGACGTCGCATGTGAGCGAGAGGGACGT
CACGTAGGCCCATCCCAAACGGCACGGACCGCGGCGGCTCGACGTCCGACGACGAGCTAA
TGACACCGTCGTCGCACTCGGACACACCGACGAGCTCGAGGTCACCACCTCGACAGCGAC
AAAGACCTTGGGAGAAGAGGGAGAGGTGGAGAGGCGAGCGAGGTGGGGGGCTGGCCAAAT
CAGCGTGTACGTAGATAAAATCATATAATAGATCATATGTGAACCCCTGGGACGAGTTTA
ATGATAGCATTTCGGGTATTCGAAATTACGGGGGCTAAAGTGGCCATCCGGACAAGTTCA
AAGACCTATAGTGATTTTTTCTCTTTTTACGTCACTCTACGGATGAAATTGTCTTCCTGC
ATGCCAATATAATTTGTCTTACTGCCACATCACGCTGAAACTGCCACGTATAGAAAAATA
TTTTTCTTACTGTCTCCCAGTAATGTCTTTGTTTATACTCCCTCCGTTCCTAAATATAAG
TCTTTTTAGGAATTCAACTAAGAGACTACATACATAGCAAAATGAACGAATCTATACTCT
AAAATGTGTTTATATACATC