Contig Data
morexGenes
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Map Locations of contig_1577792 (4636 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1577792

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_17719 1 581 bp MLOC_17719.1 Available Available LOC_Os02g27769.1, FRAME:-1, EVALUE:9e-49, 13102.m03030 protein 40S ribosomal protein S27, putative, expressed





CDS Structure of MLOC_17719






Contig Sequence (4636 bp)

>contig_1577792 4636 assembly3_WGSMorex_rbca.fasta
GAGATGTAGCAGGTGTAAATGCTAATGCGCCTAATCAACTAAAAAAATACTAGTACTCCC
TCCGTCACGGTTNAGAAGGCACGCTTGAAAAATCTCTGAGACCAAGATAATCATTGGTTA
TGAGATGTAGCAGGTGTAAATGCTAATGCACCTAATCAACTGAGAAAATACTAGCACTAA
TGTGTGAGCGACAAATTGGAAGGGCATATGCATGAGTAGTACTAGTACTAATTAATAGAA
GTAATTGCAAATTTAAATGTGTCTTCTAAACCATGACGGAGGAAGTATTAATGTGTGTGC
GACAATTAATTAATATAAGTAATTGTTTTCGCGCCTTAAACCTTCTATTTTGAAAACGCA
CGCAAGTATAACTATGCTTCTAAACCATGACGAAGAAAGTAGGTTTCTTAAAACTCTAGT
TGAGCTAGTCTTGTTTTAACGTAAGATGTCACATGAATTAGGCTCAATTAGAATGAAATT
CGTTTGCTCTGCACGAAATATGTCTGGTTTATTCGTATCCATGTCCAAAGATGAATAATG
ATTTGCGAACTAGGTCTGCTTTATTCAATTTACATTTGAAATGCCAGCAGAACTTCTGAT
GGTGTAATCCGATGGCATTGGAGATGCCAGATCAATTATTCATCAACACGAAGCAAGCAA
GCAGCAGCAGGGCAGCTGGGAGAGGCATCAACCGCAAGTACAATGCTATCGTCAAGAGGG
GAAAGAAATGGGCAACCAATAATGCAACACACAGCAACAGCAAATGAAAGCAATAAAAGA
TTCAAGAGCATATAGCAGAGAAAGCAACATCAGAAGGAATAACAGTTCATCGAAGACAAA
CATAATGCCAGGCTGGTACTACTAGTCTGATCTCACAACCCAAACGGAACATAGTACAGT
GGTCATCATAATATTACTCAAGCTAGATATCACATTACCAAAGATGGGTTCAACTTGCCG
ACAATGCAAAATCTTCAGACTAACGCCCTGGAGAAACTCAAAGTTCAACAATGGCTTGCT
TTTTTAGGTAGCCTTCAAAGGTTTAGTCGCCCTTGCGGCGGAAGGAGCAGCCCTCAGTTA
GCCTGGCCTTGCCACCGGTTGGCTGGCAGAGCACTGTTTGGCAGCCTGGGCACACCACGA
CAGTCTGGGAGTGGCTGAACACAGTAGTGCTGCAATCACACAAAAGAGTGCTTCAGCAAA
TCAACCATAAAAAAATTGACGATCTGCAAACATCAAAACAAAGTAAATCATGGCAAGTAG
ACTCAATGGTCCAAATGAAATGATAAATGATTGATATGTGATGTATAAATGTATTGCATA
GTAAACTACTTGAAGGTAACTTAAAATGGCACGGGAGCCGATGATTCTAGATACAATTGT
GGAACAATTATTACAGCAGTAGGAAAGTATGATTACAAGGATTGTGTTTCAACTAGCATG
TTTAGAGGCTCGTATATGCAACTAGGGCATTAGTACGTATGTGAAGTGCAGCACTACTGT
TGGCAGCCCACTCACATTACCAGTTTACTAAGCAAGAACGTTTTAAAGCATGCCAATGTC
TTGTTAACAAATGAACATCCAAGGCTAATCAGTACCAAATGAACCTACTCGACTATTTAC
TTGCAAAGAAAAGGTGAAGAAAAATTACATGTTGAAGCAACCCTGGCACTTGACGTCCTG
CAACGTTAACACATGACCATTAGTAAGAACCACTATAATCCAAACAGAAAAATGAAAATG
AATAACTTAAGCATAACAAATGCACTAAACCAATTGCAGCCACATTTTAACCATTAGTGC
TATGATATCGACAAGACAAGCAGCAGCTTACATGATAAAAGGAACAGCATTACTAAATAA
CACAGAAACGTCCAGCAGGAGAAATGATTCGGTGGATCCACAGAAACAACTCAGATCAGA
ACAGCACTAAGTTTTCTGCACTAGCATAGAGATTTTGGGATACCTAGAACATGTGGCAAC
ACAGGTTGACATATATGCAAGTGTATGATGTATATACATTCGATTTGATAGAACTAACAC
ATGCTTCAAGAGTAATCATGGACAATCACAATCAGCCACATAATCTACCACATAACTGGG
GTAACAGGCACCATTACTCATCTACATTAACAGCCTACCGAAGCAAAATTCCAATCAGAT
AAAAATGCCAAGCAACCAAAAGGTGACACATTCGTTCAAAGTATACCAACTGATCAGTCC
AGATTACAACTAAGCCTAGGTTCAGCATTTCAGTTGCATTAACTCTTCTTTTTAATCTAG
ACACTAAGAAATAGACTTTAGTTTTATAATCAAATCAACAGATACATACTGTATGTAGAG
TGATCACATCAAAACGATATTCATCTCATAGATTTGAGGGAGGTGGCAACAAGAATTCAT
CTTCAGAAATCTGATTTAGCAGTAGCATTACTTGTTTCTTCAGTTTAGTTTCCAGAAGAT
TGTACGTAGCCTTGAAGTTCGGAAAAGAATAAGAAGCTTGATTAATACTCCCTCCATTCC
TTTATATAAGGTGTATTTGCTTTTTAATAAAATTTCAGAATGTAAGGTGCATTAATTCTA
ATTCCTCATAATTCACATGTTAGCCCTCCTGAAAAAAGGAAAGTATCTCTTTTCTGATTG
TATGTATCTCTTTTTATAGAGAAAGAAGGAAACTATGTCTTTGTCGATTGCATTATCTCA
TACTTTTATGGACTAATTGATTCACTTTCCAATAACCAACAATATTTGCCAAGGGTAATT
TTTCTTAACATGTTTATAATTATGTGTCTTGGTCACTGTGCCAAAAATAATACACCTTCA
ATAAAGGAAAAGAGGGAGTAGCTAAGTGTAAATTCATTAAAAAAAATCTGCAGTTCTACA
AGCCCTTCTTTATTTTAACAAATACTACTCCCTCTGCTCCGAAATATAAGTCTTTTTAGA
GGTTCCACTAGAAGACTACATACGGATATATATAGACATACTTTAGAGTGCAGATTCACT
CATTTTGCTTGCTCCGTATGTAGTCATCTAGTGAAATCTCTAGAGAGACTTGTTATTTAG
AAACAGAGGGAGTAGTGTTTATATTTATATTAAAAAAAGGAGGAACCAGATTTGAACAAG
CTTATCATCATAGAAGATGACAGCACAAAACGAGTATAATTCAAATTTACATTGTCAGGA
AGATATTCTTGGTGGATTTTTTTTCCCACTCGAGCATTTGCTCCCCTATAACCAAAGAAG
CCGTCCGTAATCGCTGCTGCACGAATACCCATCGCAGAGAATGGCACGATGCGCGCACGG
AGAGAAGATGCCGAGGGAAAGGGGAAATCTTTACCATGAAGAAAGAGTTGGGGGACTGGA
CGAGGCGCTTCTTCTTGTGCTTGAGCTTCTCGAGCTCGGCCGGCGGGTTGAGCAGGTCGA
TGTCGTTCTGCAGCACCTGCAACATCAGCACGCAACACACGAGAATCAGACACCGGGGCT
CAGAACCAACCGTAGATCCAGAGAGGAACCGAGCAAGGGAAGCCATGGGAGATGGAGCGA
TCGGCTCACCATCGTGGGAGGCTAGGGTTTGCTCGCGCTCTCCGGCGTCTCTCCGGCAGG
GACGATCCGAGGAGGCGGCGGGTGCGAGGGGATGGAGAAACTGGAATAGGTTAGGGTTGA
GCCACAGTTTATAGCCGAGGGTGAGGGGATCTCGGCCGTCCGATCGATCTAATGGGCCTT
GTCCTCCTATTGTGCCTATGGGCCGGTGCGGCAGCAGCGTTTCACTCGCTACAAATCAAA
CCAAACCCCTAAAAAATCAAACAAATAATACCTCCTTTTTTTTTTGCTTCGCAAGGCAAT
ACAGGTCTCAAAAATATATAAAACCATAATACAAGCCATGTAGACATCGACCTGACATAA
CTAAAAAGATAGCACAACACTAATCTTTGCATGAAAGAACATCAGCCAAGACGGAAAAAA
CAGAATCAAGATCCATGAATCACGTGAGCTTGACACCAAAACCTGTCACCTGCCTCGGTA
CCAACACGACGGCCACCAAAGGAAAAAAATGATGGATCATCTCCTCATCCGCGTTCGATG
CAGCTCCATTGTTGGTATGCAGTTTTACGGACCTTCAAGATGGCTCACCAAAGACGAAAC
CATTATCGTTGAACGAATCAAACATGTGGCAACACCTCGAACGTGTCATCAAACTCTAGG
TCTAACACTCCAGCGAGACTAAGACGTTGGGGGAGGAAACCATACCTACTAGCCACAAAC
CACAAACCCAACATACGGTGTGTATTCCACATATCGTTGATGCAGACAACTATTTGCATC
CACACCTTGACTACCTTCCAAGATCCGCGTCGACGCTGGAGCCGATGTCACCACAAATGT
GGAGCCCGAGGACACAAGTCCACCAGAAGGATGCCGCCACGGCCATGACTTCCCCACTTG
AACATGCTAGTTCCCAAATCCATCATTGGCCATAGAGTTACTTACCTCGCCGAGGGAAGG
ATTGAAGCTTCTTTATTTGGTGGTGGTGTCGCCATCGCCGACACCAAGACGTCAAACGCC
AAGACCTAAGATACTAGGTGTGACAGCCCGATGCCGACNTTCCAGAAGATTCCCCCTTCC
TTCCGTTTTCGTCGTG