Contig Data
morexGenes
Links



Map Locations of contig_1577722 (5524 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1577722

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_17714 3 1835 bp MLOC_17714.2 Available Available LOC_Os07g18510.1, FRAME:-2, EVALUE:8e-125, 13107.m01940 protein OsFBLD5 - F-box, LRR and FBD domain containing protein, expressed





CDS Structure of MLOC_17714






Contig Sequence (5524 bp)

>contig_1577722 5524 assembly3_WGSMorex_rbca.fasta
CAGCGCCGCACGAGTGGGTGGGTGGAGGGGGAGGGTGGGGGGGGGGGGGGAGCACAACCA
GAGTGAAGACGTACCCTGTCCGCCAGTGGCAACAACTGCTTACGCATCGTTGGTACATCG
CCCTCTCCATGCACATCCTGAAGGAGTTGCCACTTGTGTCCACCCTACTTCTATCTCCAG
GAAAACGAGACACTCAGAAACAGAAAAATGAAACCCGCGCAGACTCGCTTGAAAAATTCA
GGGAAAAAAAACATAACTCTTCAAGGCATGGAAACACAAACGGGACCCCACAAAAAATTA
CCAGGTACCAGCCTAACCCACCTGAGGAGATCCGGTTCGTTTGAACCGCAGCTCCCAGTG
CAGGGTTAGGTGACCGGGCAGACAGGATAACTGACTGATGACGAATTTGAAACCAGCTGG
CTGTAAAATAATATAAGTGTATTTGGAATTTCATTAAGGCAAGAGGTAATTACACAAATA
TATTAGCTGGAGCTTATAGGTGCTACCAGCTTAAAATATGACACCAATCAGGAGAGAAAA
ACTAGCTGTGACTAAACAGGACACACGAATCCTAGTACCCTCTATCATCTTGTACATCGC
AAGTTTGGACTTGAATCTTGAGCTCAAGCACGACCTCCTAAATCCTAGTATGATCCAGAG
TACGATAGCAATAGACAGGTAAGCAAGGGAAGCCGGCTGTGACATCAAGTGTCAACATAA
GGACATGTCAAAGGGATCAGCTTCAGAAAAACCATGGTATTTGAAGCTCTTCTTTGTATC
CCATTTTAGTTCAATATGTGCATCTCGAGAAGCTCTATTCTCCACTTGTAGCCGTTTACG
TTGAAAACGCATCCATTTGCTGTTGCAGCGGTTGACAACTCCAATTTCCATTTCCTTAAG
CACTTTTGCATTCAGAACAAAGAACTGGGCAAAGTGAATAACTTGCCCCCGGTTACCATC
GTAATTCTTCAATACCACTTTTTTTAAATGGAGTTCTAGGCATTCAATTGGATCCAGTGG
GTCATACTTGGGCACATTATTCATATCCTCCTGTGGGTGCGACTGCAGATAGAAGAATGA
AATAATATAAAGGCAGTCACTGACAAATTAGCAACACATAACAGTCTAACCCAATGTTGA
TTTTCATATTTAAGACAAGAAAGATGTATACTCACAATGACGTACAGCTTCTCTAAGTAA
GGGAAGCACTTGAGCAGGCCAACAATTGCATCTAGATTCGGACCAATAGAGTCAACAACC
AAAATCTTCACTTTACGCATTATGGTTTTCAAGCTGACATCAATCGTTTTCTGGAGAAGA
ATAAAGCAAGTGTGGATAAGAATAATAGCTTGTATTACCTCCATCCCAAAATACTTGTCT
TAGATTTGTCATACAAATGTATCTAACACTAAAATGTGTCGTAGATACATCCGTATCTAG
ACAAATGTAAGACAAGTAATTCAGGACTGAGGGAATGTTGAATGTGTGATTGGCCTACCT
GGAGAACTGTGGTTCCAGGCTTTAGTGTAGATATACCATGAGACAACAAGCCCAATAGCT
CCAGTTTAGGTGCCCCCGTTATCCGGATGGTCGCCGGACCAATGTGTGAATCATGCAGTA
TTAACCTCTCAAGGCATGGGACTTCCTGGACGAGCAGCTCTTGGCAAGTGACGATACCTT
GTTTGTCCCGATGAGGCGAGAAGCTGAAGCGCCTAACCGTCGGGGAGCTGATGCAGAGGC
GACCGATGCCGATGTTTCGGTCCAGCGAAAGGCTTTCCAAGGCAATGCAGCCAGAGAGCA
TGCCGTGGAGGGAGTCCTCCGAGATGCTGACGCGGCACAGGGTGAGCTGCTTGAGGCGCG
GAAATTTCAGGGGCGGCGCGGTCAACTCGGGGAAGTCGCAGCTGCCGAATTTGGCGGCGC
GGAGCGTGGGCGCAAAGCAGAGCGCGGACGGCGGCAGCAGGTGGCGTCCGTTCCCGTGCG
CTTTGGTGTAGTCGATTTCGAGATCCTGCAGGCGGGCGAGCGATCCGGCGCGGAGCCAGC
GGTCGGTCTGGGCCGGCGGGAAGGCCTGGCGGAGCGAGAACCGGCGGGCGGGGCCGGGAT
GGTCGGCGAGGATCCTGGAGACGAAAGCGATGTGCTTGCGGGCGTCGCCCGCGGCGCAGA
AGCGGCGGTCGATCAACAGGTTGAGCGGCGCCGCGGACGAGAGCCAGAGGGGGCGCCAGC
GGCGCGAGAGGAGCTGCGTGCGCGCGCCGTCCTTGGTGGGGAGGAGGGAGACGACGGCGC
CGAGGACGTCGTCGGGGAGGTGGCTGATGAAGTCGTCGAGGCCTCCCTGTTGCTCCCGGT
GGCCGGGAATCCACGGCGGCACCTGCCGGTCTTCGGATCGGTAGCTCGCCGACTCGTGCT
CTCCGGTCGTGGCCGCCGACGCCGCCGACGCCGCGTCATCCATGGCCGGCGGTTGGCGCG
CACGAGGGTTTGTTGGTGGTCGCTGAAGGGAGTGTGGGGGATTCCAGGATTTGGGAACGT
GTGTTTTTTTTCTTCTGGGGAGAACGAGTCAATGAGATATGCGGAACGTGTTTTTTTCTT
ATTCTTCTCCATGCGACGGAGAAGGAGAGGGCGGTAGACCCAGCCCAGCCCAGCCCAGCC
CAGCCAAAGCCTTTGACCCTGTGCCAGCGTTTGTAGGAAAAAATTGTTTATACACCAATG
TAGAAAGGATTATTCTTTTATATAGTAATTTCAAAAAAAATGTTCTTCCAGTATAAAAGA
CATTGTATACCATCGGAAAAATGTATGTGGTATTATCAATAAATATTCGTTTCCAAATAC
AATGTAAACAAATGTTCGCAACGTGTATTTGAAAAATATTTTCCATCTATACAAAAAAGT
TTAAAATGTGTATTTAAAATATTAACATCACATATTTGAATAATAATCCATGCGTATAGT
GAAGATGTAAACATCAAATATATAGCCAGGCATGCTATAGTGTAGGCCCTATATTTCCAA
ACAACTGAGATATAACCCAAAGCTAAAAAAAACTGAGATATAGCCCTACCATATGTATTG
CACTAGGGAAATATTTACTTTGGTTGCCTTTTGGCAGTTTCTTTTATTTTGTTTGTGTTG
ACTAATTTATCTGGAAACATAAAAAATATGGTAATTAGAAATATTTACGGATTCAAAAAA
TGGTCATATGTTCAAAAAAATAAAAAATAAAAGTTCGTGAATTCAAAAAATCGCGATTTT
GAAAATTGTTTTGTAATTCAATAAATATTGACGATTTCAAAGAAATGTAGAGAACTATAT
AAATTTTGTGGATTCAAGCAAATGTTAGTGAAAACAATAGAAGTTCAAATTTAAGAATAT
TCACAAATTAAAGAATACTAATTCTAAAATTTGCAAAAGGCCCGAATTCAAAAAATGTTT
GCAAAATAAGAAACTGTTCATGACTGTCAAGAAATGTCCGGGGATTCCAAAAATGTTCAC
AAATCCAAAAATATATACCAGAATCCGATATTTCTTGAAAAATTTGAAATGTTCTCGAAT
TTAAAAAATGTTCACGAAATAAAAAAATGTGCCCATTTCTAAAAAATGTTCGCAAAAGTA
ATATAGAGTGTTGCCAAAAGTATATAAAAGTTGTAGAATATTGACATGAATACTTCATAA
ATTATCAATACGTTGCAGATGTATCAGCATCCCCAAGTTCAATTCTTGCTCGTCCTGAGT
AGGTAAATGATAAAAAAAAAATATGAAGTGTGAATGCTAGCNTAGTATATAAGTTTGATC
AATGTTACTACTAATCACTTTTTCTAGCATCATAAAATAGCAACTCTTTTCTCATAGAGC
TTCTCATGATTACATGACAAGCTATTCACATGTTAAATTACAGACCATAAAATTTCTTGG
AAACTAGAAAAGTATGTTCCCAGTCACCAAACAACTATAATTCATCTTTTTTAGGAAGGG
TCTATGTAAGAGNNNNNNNNNNNNNNNNNNNNCATACTCAACTATCATTTAGTCTTTCCA
TGATTGCTGACACTCAAGACATATTTTTAGAACAAGAAGTTTTAATCAAACATATAGGAA
GATAGGGGCTTAATGTTTTTCCTCCAACTTATTCATCTCAAAGATAATGTCAACAATAAT
GAATCATGATTACCTATATCCAACTGAATATATGTGCATGGATCTTTCCCCACCACATGG
TGCTTGCCAACTAAAGAATTAATANATTGGAATAGGGATGAACATTATTTACTCTTGCAT
AAAAGTAAAATATAGGTCCTTCGCAGAGGGAAGGAGAGGTTGTCATGCACTATTTATTTT
TGGATGTGCAATTTCTTAATGAAAAAGATCGTCACTTTATATTGCCCCTTGTGATGGCAA
ACTTTATTATGCAGTCTGTCTGTTTTATTGCTTCACCATCTCAAGTTCATATAAAACTTA
TTTTCCCTTCCAATAAAAGATCNNACATATTTAGGAGCAATTTTTATTGTTTTTTTTCAC
CGATGACAACTTACTTGAAGGATCTTGTTCAATCGATAGATAGGTATGATGGACTCTCAT
GACAAGAAACTGGGTTTAAGGGTGCACAAGTAGTATCTCTACTTAGTGCAAATTTTTGGG
CTAGTAAAAGATCTAAAGCAAGCACCACATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNAAGCAAACATAACCATTACGTTGTCTTCCTTGGCCAACGATAACTACTTGA
TCAAGTTTGAAAATAATTAGTGGGGGCTCACAATCATAGAAGATGTCAAATATAGTATAT
TTATATGTGAAATCTCTCTTCCTTCAATATTCTTTCATGAAATGTTCAAGTGACCAGTGT
TATTTTTGTTAACCTCTAATAAATTTTACTGCTTATACTCTTAGTATGTGAAGTCACTAC
TCCCCATGGGACACACATATGAAGCTTATATAATTTCACATTTTATGTCCTTCAATTCAT
TCAACATTTTCTCTTATGATATAAGTGGAGCACAAGAGTGATTATCAAACTACTCTCAAC
AAGATATAAGTGAAGTTCATAGAGCATTAATCAATGAATATAGAGAGACCAATATCCAAG
CTCAAAAAAATAAGTAAAACACACAAAGCATTCTATAAATCCATACTAAAAAGATTTAAG
TAAAGCACATGAAGCATTCTATAAATCAAACAAGGATTAGATGGTGCATAAAATAAAAGG
GAATAATAAACACAAAATATGTTCCAAGAATAGTACATGTGAACGAATGAAAACTTAGGA
TTAACATTGGCTAAGTAATAATTGTTGAGGAAGAGAGGTGGGATGTGTGGCATCCCCAAT
CTTAGATGCTTGATACTTCTTGTAATGTTTATTTGGGGAGCCTTGGGCATCCCCAAGNTT
GAGCTTTTGTATCCCGTTCAATCCTCTCATATCCTGGTTTCATCTAAGTGTCAAAAACTT
CATCCACANNNNNNNNNNAAAGAACTCGTGAGATAGGATAGTACACATAAGAATAAATAA
ATAC