morexGenes - Barley RNA-seq Database

Contig contig_1577652

Source Contig contig_1577652

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1577652 (2280 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_1577652

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_17698	1	674 bp	MLOC_17698.1	Available	Available	None
MLOC_17697	2	936 bp	MLOC_17697.2	Available	Available	None

CDS Structure of MLOC_17698

CDS Structure of MLOC_17697

Contig Sequence (2280 bp)

>contig_1577652 2280 assembly3_WGSMorex_rbca.fasta
TTCAACCCTTAAAAGTGCCAAAAAAATACCAATTCTCAACCCTTAAACTGGTTTGAGGGT
ACTACTAGTGATGCTCAAACCCTCAAACCAGTTTTAAGGGTTGAGAATTTGCATTTTTTG
ACACTTTTAAGGATTGAAAAGCAGGGTTAAAGACTAGAACCCTCAAACCCAACCCTTATA
ACAAAAACAGGGGCAAAAACAGGAGAACTCGGGACGGCACGGCTGCCTCTGGCGCGGCGG
CGAGGAGAGCTCGAGGAGGCCTGGTGCAGGAGGCGGCGGGGCGGGGCGCGGCTCGGCCGG
AATGGCGCGGCAGTTGGGGACAGGGAAAAGTCCTTCCCGCGCGACGATGAAACGGTTTAA
GGGTTGAGGTAGTTTGCGCTCCCCAACCCTCACTTCTACAAGTTGGGAGGAAGTTTGAGG
TTTGGAGGGAAGTTTGAGGTTTGGATCCTTAAATTTTTTTAAGATTTAAGGGTACTACTC
GAGATGCTCTTAGGGTAGTCTATGGAGGAGTCTGCATGATTTATAATCCAAACTTAACAT
CCCCATGTGAGTTTCTTAGGTCATTACAAATGCATGCATTATTTGTCTGAGGTGACAAGA
ATTGACTCGTATTCATACAAATTACTCAAACAGATACAGCTAAAGAAAGAAATTTAGCAC
ACATCCTTCTACAGTGGCAGAAGCCATACCCGAACGGGTTTTGCCGACAACAATTCACAT
AATTTACTCAAACAGAAACCACTCAAGAAAGAAACTTAGCTGACATTAAGCAGCAGCAGA
AGGCCTATGCGAGCGGGTCTTGCCGACAGCAATACTTGAGACTCACTTTCACACATCACA
AATTATCTTACATTGCGTCCACATTCCACAGATCAACCAGTAATAATACTACTCAAGTCA
TAGGTGGCAGATCATAGACATATATATAGTACAAGAGACATGCATAATATAGTGCAGGAA
AAAAACTGATATCCGTCTTGCTTCTCCATCAAACAAGATGCTTCGTCTTCACTCCACTTG
CTTCTGCAGTTCCCTTCAGATTCTGCGCTGCTCCACTGGCATGCACATCTCATGCTCCAC
TTCATTGCGCGCACCCTGAGCAAGGCCACCAAGAGTGATGCAGCCAGTAACAAAAACAAA
CGCAAATGCAGCCCGCTTGCTAGCCTTCTTGACTGTAATTATCTCGCGCCTGCAGGTAGG
TTGGTGGGATGAGAAGGTAACAAGTATATCTCACGCTTGCGGAAATATATATTCAACTGA
TGTAGCAGATGAAAAACAGAGCAAATATCTATGTCTACATATGGATGATATTGTACCATC
AAGGGACAACCCCCATAGCTGAGGAAAAAACAGAGCAAATATCTATGTCTGCATATGGTT
GGTAGGTATTGTACCATTGAGGGTCATGTGGCCTGGGCTTGACTTGTGTGCAGAGAGTCT
TGAGCACAAATCTGTCTCGCTGGGAAGCCGCGGATTTGGCCTGGGCGTCAGCGATGAGAT
CATACAGCTCCTCTTTCTTCTGCTGGATTTGCGTTGCACGGTGTCCTCCCCGAAAGGCAC
GTGTGTATCCGGAATGCTGGACAGACAGAAGCAACATTGAGAACTGATGACCAAATAATA
TTGACAAGATATGTGGTCTGAGCGCTAATTTTCTAAAGATGGAATTCGGTTTCACACTGT
GCACTTCATAATAAATTTTGCTAGGCACATTTAGCATAATAGCCGTTCATCCCTAGATTA
GTATGTCGAGCAGAACAGATGGCGTCCACCAATCGGATCAAGAATCAGACATCGGGCCAC
AGATCTAAGAAAATAGAGCGCCGGAGATGGGACGGAGACCAAGATACCTGCGGGACGGGG
ACGAGCTGGCGAAACCCCTCACCTGCCGGACGCAGGACCCTCGTCCCGCCTCGCGGACTA
GGGAGAAACCCGCCATAGTCGCAGGCCTGCAAACAAGCACGAATTAACCAGCCAAGACTC
GATAAATCAGGGTTGGAACCTCCCTGCAGATTGGAAGGGTTGGAACCAACCTTGCGGATC
TGAACCACTGGTTAGGGTTAGGGTTCCTCGCTGTCTATATCTGGCAGTTCCGCCGCAGAG
ATGGAGGAGGGGACGCTTTGACCGATCGGGCGATTCTCTGTTTATCAACATCTATCCCTT
AAACCCTTAAAAATAACCGTTTTTTTACAGTTTTCATCAAAAAAAATGATGTAGACTAGA
ACCCTTAAACCCTTAAATCCGTAAAAAAATTTAAAGGTCCAACCCTCAAACCCCTTCCCA