Map Locations of contig_1577599 (9980 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1577599

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_17680 2 4715 bp MLOC_17680.1 Available Available LOC_Os03g20450.1, FRAME:+1, EVALUE:0.0, 13103.m02454 protein expressed protein





CDS Structure of MLOC_17680






Contig Sequence (9980 bp)

>contig_1577599 9980 assembly3_WGSMorex_rbca.fasta
GATTTCTTGTATTTGATTGTAGGGTCGTTTGAGAGAGACCATCTTCATCCTACACATCCC
ACGGATCCATAAACCTTAGGTCATCCACTTGANNNAAAATTGCTACTCTCCTACAAAACT
CCGCGCTTGGAAGCTCAACAGAGTCTACACGATTAAAGTTGTGTAGTAGACATCAACTGC
AAGCAAAATGATACATGATGCAAACATGTTCATTGTATGAAAATGCATAATAGGAGGTCA
TACCAAGTCTCCCATGCCAAGGCCGCTCACGGGATAGGCTTCAACGCTCTCAAGCGCGGT
ACAATATTTGTTGCACTCTTGTTGGATGAACCCTCGTCTCTTTTGAATGGAGTTGATGCC
ACAGATGCTCGCAAACTTGTAGGGGGCAAACTTCCTCCTTTCACGAAAGAAAGACGTCTC
CCTTTTGCTTGACACTGGTCTTGGTATCTTATCCTATCTCGATACAACTCTCGTAAATCA
AAGTGTCCTCTTTTTCGTTGTATGATCCGGTGTGAATGCTCTTTCCCCTCCTTTCTGCCT
CGACTTTTTGGGTCAGCTCATCGATGAAGATCAATGGATCGTTCGTAATGTCAACCTCTT
CTTCCTCACCCTCGCAATATAAGTCTTCTTCATCTTCATGCCAACAGTTTCCATGGTCGT
CCTCTTTTTCTCCATCCATACCATATTGGTCGCGAGCATCTTGGCTTTCTGTCAGCTCGG
GATCGAAAGGATGGCCTTCATTGAAAGTGTTATCTTGGTCGTCGACATGAAAAGCGTGCC
CATTGCCCTCATAGATGACGTCTTGCGTGAACTGAGTGTAATCTGGTTCCTCGCTCGGGG
CGGGCATTCCGTTGAATGGCTTGTGTGCGCCAGAAAATGTGGTCGTATGAATGGACTAGG
CATGCTTCCGGAGCATCGCATACGACGACTGGACAACCATAGGTGTGACGTTGAGGTCGA
TGATGGGTGGGATGGAGGGGGTGCTCGACTCGACCGGTGACGTCGAGAACCCGATCTGGC
CGTGCAGTCGCGATGTGGAGAACACGTGCATCTCTGGGGTTACGGAGGAGGCTGGCGGCT
AGTCATGCGAAGGCCGAATGACCGACGGGCCTCTGCTCGCCGCGACCATTGCTGTAGCGA
AGAGAATGGCCGACGGTGGTCGGTAATACCCAAGCAGCATGAGGTTGTTCGTCGTAGCTG
TTTGCGCGAACTTGGCGACGAGCTCATTGTTCTTGTCAACGTTGGCCTTGAACTGGATGG
CTTTAGTCTCGGTCGCGCGCTAGGTGGCGTACTCGACTGCGGCCTTCTTCTCCTTCGTGG
CGTATAATCATTCCCTCTGCTTGGCCGATTCACGGCCGAGGCGCGCCATCTCCTTCGGCG
TGAGCTCTGACTGCAACTTCTTCAGGGCCTTCTTCTTCGTGACGGCGGCCTGGTCGTCGG
GTTTCTTCGGGGTCATGACGGAGGAAGGGGAGCAGGAGCACGGGAGGGTTTTGGAGGAGG
AGGGAAAATGTGGCCAATGTGTTCCCTACGGGCGGGCCAGAGAAGGATAAGGACGTCGGA
ATTATAAAATATAGAAATGATATAAGCATCAGAAATTGAATCTCGATGAATTAGAAGTAC
TACTGTCTTTTTAATCATTCAATCATTGATCGGTTTGGGGTGCGGGTATAGTTGTATCAC
TGGAAAGGTAGGAACAAAAGTCACATTAGCTGTATGGGGTCAAGGGGGTGCGGCAGGAGA
GCACAGACGGAGACCGCGACCGCTGGCTGTACGTTTCCCCTTGTGCACCGGTTACAGGGG
TGGGTGTCCCCTCTTCCTCTTCAATCCGCGCACCCGAAGCTGAGGCGAGCATATCTGGCG
CGGCACGCTGGCCTGACAGGGAGATTAGCACTCGTCATCATGGCTTCGTCTTAACGCTAA
TCATGCTCAAATCATGCTGCTGCATTCCGGGATTATTTTCTCATCCTAGTATCCGAGCTA
GGATGACTCAATTATTATTGCTAACTGGAAGCGATACTAGTAGCATCATCTCCTTTCGAA
TGTAAGAACTATCAACGCTGATAAGATTTCTCTGATAATCCCGGCGGATAAGAATTGGCT
TTTCTTTCCTTCTCTGCTGCTGCTGCTGGTGGTAACTTTGTGCTTTGTAGGGAAAAGCCT
TGCCTTGTTTTGCTTCCGCTTTATAGATCACTTTTCCTTAAAGTAAATCCAGACACCCTT
TTTTTTTTTGCACGGACACACTTTTGAGTTGACAATCTCACTGTGAAATGTGCCTCCAGT
CCTGCGCAAAGCAATGCATCGCCACCGGACCGACCGGACCGGACCCTTTTAATTCTCTTT
TCACCTGCTCCCGTCAGTACACCAACAGTCAGTGAACACGCCGAGCACGGGCAAGGCCAT
GAGCTCTCTGTTTGCTCGGTCTCCCCCAAAAGGTGGACGCTGCTGCATTCTGTAGGGATC
AGAAGTCATATTATCATCAAAATTCCTTCAAGATTCCAATCAGAGAGACGAGCGCAGCAA
CGACGACCCACAAAGCGCCCGGGGGAGTTTAGGTGCGCTGCTTACCCTCACTCACTCGCT
CCTTCACCTCACTCCATTTTGTTTATGTCTAATTTGGCATCTGGTTCGGTTTGGATTGCA
GGGTTCAACTCGGTTTGGACAGCAGCCATGGTTCCACTCTCCTGCCCAGCTCACGCTTGG
ATGGATTTTGTTTCTTGATGTAGCGTCGGCGTGTGCCTATGTGTTTGCCCTTGTTCCTGG
CCACATTGCCGACTTCTTGCTCTCGGTTTGGTACCTGGATGTGTTTGTCTGGCAGCTGGA
GTCCAAGCACCAAATTACCCAGCTCACATTCGCGGTGATTTTGGTTGGAATTTTCCCCAC
ACTGCAGCTTTCTTGTGCTCCTTCATCTGCCGCAATTTCCCCTTCTTCTTGGCCTCATCC
TAGCTCCGAGTTGGGTGCCGGAAAAAATCCCCAAAATTTCCATCCTTAATCTTTTCTCTC
AAGTCCAAGTGCCTTAAACCCTACCTACCCACCACCACCACCCCACATTATCACTTCGTC
TGGCTTCGTCGAGGTTGGATCTTGCAATGCGGCTCGTCGTCCTTTGTTTCTGGATTTGGG
CTGCGTCCGCCGCCGCCGCCGTGGCTGGCTCGGACATGGAGGCGCTGCTGGAGTTCGGCA
GAGGCATCCGGCAAGACCCGTCCCGCCGCCAGGCCGCTCCTTGGAACCCGACCAGTTCGT
CGGATTCCGACGGCTGCCCCGTCGACTGGCACGGCGTGCAGTGCAACGGCGGCCAGATTC
TTTCCATAGCGTTCGATGGCATTGGGCTTGTGGGCAACGCCAGCTTGTCGGCGCTTGCAA
GGATGACGATGCTTCAGAACCTATCCCTCTCCAACAACAAATTGGAAGGGGCCTTGCCAC
GTGCATTGGGGTCTCTTGCTTCGCTGCAGCACCTGGATCTTTCCAACAACAGGTTCGTCG
GCTCCATTCCGGCCGAATTGACTAAATTGAGCAACCTGGGACACCTCAATCTCTCCTCCA
ATGGCTTTGGTGGTGCATTGCCGTTGGGTTTCAGAAGCCTGAGGAAACTGAAGTACCTGG
ATCTCCGTGGCAATGGCTTCGTCGGCAAATTGGATGACATATTTGCACAGCTGCAGAGCC
CAGTCCATGTTGATTTCAGCTGCAACCAGTTCTCGGGGTCCCTGGCATCAATCTCTGATA
ACTCATCTGTGGCTAGCACACTGCAGTACCTGAATGTTAGCCATAATATGCTGTCAGGGC
CAGTATTTGAGAGCGATCCGACGCCTTTGTTTGACAGCCTCGAGGTGTTCGATGCAAGCT
ATAATGCGCTTACTGGCAACGTCCCGTCGTTCAACTTCATGATCTCCCTCAAGGTGTTGC
TTCTGCAGAACAATAATTTCTCGGGGTCCATTCCGGAAGCGCTATTTCGGGAGACCTCCA
TGATGTTGACTCAACTTGACCTCAGCTGCAACCAGCTCACAGGTACATTTATTTTCCTAC
TCTTCATTGCACATTTCCCTTATGCTTGAACAATTATTATGTTGTAGTGTAATAACCCAT
GCAAACAATGCATATATTGAACACATTTTTTTTCGTTGCAATAATAACCTCTATAACACT
GAATCAATACATACTATGTTTGTAAATGATGATGTCTTGCGATTACTAATCATGATGTCG
ATTGCCTCTAGTTTCATCGAAACCCTTGTATTACACAGGTCCAATTAGGCGTGTAACATC
AGTGAATCTGAAGTACCTGAATCTGTCATGCAACAACCTTCAGGGAACTTTACCAATCAC
ATTTGGGAGCTGTTCAGTGGTTGATTTGAGTAGAAACATGCTTTCAGGGAACATATCAGT
TGTCCATACATGGGGAGATTATGTTGAGATGATTGATTTGAGCTCAAATAGATTAACAGG
AACTTGGCCCGATCAGACTACCCAATTTTTGAGGCTGACTTTATTGAGGATTTCCAATAA
CTTGCTAGCAGGAGAATTGCCGACTGTTCTTGGAACCTATCCCGAGTTGATTGCCATAGA
TCTTAGTCTCAATCAGCTCCATGGAGCTTTACCTAAAAATCTCTTTACAGCAGTTAAGCT
GACCTATCCTAATCTTTCAGGAAACAATTTCGCAGGAACTCTGCCTCTTCCCAGTTCTGA
AACCAACAACTCAACTACTATAGACCTGTCAGTTCTTCCTGTACAGACTTCAAACCTTTC
ATTTCTTGATCTTTCAAACAATTCTTTTGGCGGTCCACTGCCTTCAGGCATTGGTCGTTT
GAGTGGATTGGTGTTGTTGGATCTTTGCCTGAACAAGTTTACTGGGCAAATTCCGACATC
AATCACCAAGCTAAAGCATTTGCTGCACATTAACTTGTCAAGCAACCATTTTGATGGTAG
CATACCTGATGGCCTCCCAGACGATCTTGTAGAGTTCAATGTATCCTACAACAATTTGTC
TGGCCCCGTTCCGGGCATTTTGCTGAAATTTCCTGATTCATCTTTCCATCCAGGGAATGA
ACTACTCGTTCTTCCCCTTTCTGGGTCACCAAATAGTCCTGAAGGATCAGGTGGGAGGAA
ACATGGTATGAAGCGTGGAATTCTGTATGCATTGATTGCATGTGTTATTGTCTTTGTTAC
CGGAATCATTGTCCTTTTACTTGTCCATTGGAAGATCTCTAACTGGAAGAGTAGCGAAAA
AGGTAAGGGCCAAAATAAGAATTCTGTAACTCAAGGACATGATGCTCCTCAGAGACGTGC
AGAAATTCCAAGTTCTGAAATGCACGATGTCTCACTAGGATCATCACCATCTGCAGAGTA
TGGGGGCGTTTCCGTGCCTTGTGGTGGCCTGGAAGGACAGCATGAAACACAATGTGTGGA
TCAGCCAACCGGTAGCATTTCCAGCCTTAAAGATAGCACAGCGTCTTCGATGCCTTCATT
GATATCATCACCGTCTGATGTGCGCTCGCACCACCACTCCATCTTGAGAGTGCACTCTCC
TGACAAACTGGTTGGGGACTTGCATCTTTTCGACATTTCTGTGTTGTTTACGGCTGAAGA
GCTCTCTCGTGCTCCGGCAGAGATCATCGGCAGGAGCTGTCACGGGACATCCTACAAGGC
TACTCTTGACAATGGTTATGTGCTGACAGTGAAGTGGCTGAAGGAGGGCTTTGCTAAGAG
CAAGAAAGAGTTTTCCCGTGAAATCAAGAAGCTCGGCAGCGTCAAACATCCCAGTCTAGT
GTCCCTGCGAGGCTACTACTGGGGCCCCAAAGAGCATGAGAGGATCATCATATCAGACTA
TGTAGATGCCACATCTCTGTCAACCTACCTGTCTGGTAATGGTTCTCGGCTCTCTCTCCA
TCAAATTCTAGTGGCAGCTGATTTGTATGTATTCTGATGCATTTCTTTTCTGTTATCTTT
CAGAGATTGAAGAGCGAGATCTTGCACCTCTGTCGGTGGGCCAGCGGCTCGATATCGCGA
TCAGCATTGCCCACTGCCTAGATTACCTGCACAATGAGCGGGTGATCCCACATGGCAACC
TCAAGTCGTCCAACGTCCTGCTTCAGGACTCAAGCCCGTCTGCTCTGGTAACTGACTACA
GCCTTCACAGGCTGATGACTCCGGTGGGCATGGCCGAGCAGGTCCTGAATGCAGGGGCCC
TTGGGTACTCCCCTCCTGAGTTTGCGAGCACCAGCAAGCCATGCCCGTCTCTCAAGAGCG
ACGTGTACGCCTTTGGTGTCATCCTGCTTGAGCTTCTAACAGGGAGGATCGCGGGCGAGA
TCATTTGTGTGAGCGACGGCGCGGTCGACCTGACGGACTGGGTGAGGATGCTGGCAAGGG
AGGAGCGTGCTTCGGAGTGCTTCGACAGCCGCATTGTTGAAACTGAAAACTCAGGGGCCG
CATCCAACAAGCTGGAGGACATGCTGCACATTGCCATCCGGTGTATCCGGTCTGCATCGG
AGAGGCCGGAGATAAGAACGGTGTTTGAGGACCTCTCTTCGCTTTCGTCGTTGTCGTGAC
GGTGACTGGGAGTGGCGTACATCTCGTACTTACATCAGGTTCTTGAGACTCCGGAGAGCC
GGGTATACTAACAGGGTGTTAGGGTTTTGTGGCTATGTCTCATGTGTGTAGTCTCTTTTG
AGCATTTCATTGGTGGGGTTCCTCTTCCTGGGAAGCGTTCATACATTTTTTGGTTAGTTT
ACAATTCTAGCATTAGATGACTTGTGTGAGAATGTGTTTTGTGCATTTGCGATTCTGGAC
ATCTGATAGGAAATAAGAAGGTTGCATTGATTCGTTTTTTTCATGGTTTACATGATTATA
CAGTCAAATAACCAATTATGTATAGCTATATGCTTGGTGCTTAAATCTTTGCAAGAAGCT
GAAGGATTTGCCAAACAAGAATAAAGGAAACTAGCAGGTGAAGGCGCAGCGTGCACCCAT
GCAAGTGTTCTTGACTTATACATTATTTTTGTTGCTACTTAAGAACTGTAAGAACAATAT
GGTACATGTCGGATGAGTATAAAGTACATCTGGTTGAACATTATGTTGTACTCCCTCCGT
TTCGAAATATAAGACCTTTTAGAGTTTTGACTATAGACTACATACGGAGTAAANNGAGTG
AATCTACACTCTAAAATATGAGTATGTAGTATATAGGAATCTCTAAAAGGTCTTATATTN
AGGAACGGAGGGAGTAGATTACATTTGCTAGATGACACAATTTGCTAATGAAAAAGAAAA
TCCAGTGAAATGCAATAGTTTATTTATAGGCTAAGCTATCATAAGCAAATGTGAAATAGA
AGATTCACACATTAAAACAGTGAGATTTTAGTAACGTTATAGTAAGAGAAGATGTATATA
CAACACACACTAGACAGAGAAAATATGCTCCACATATTCAAGATGACTGCATAATATGTG
TACATACTATTCAATGAAAATATTATACTAAAACCAATATTCAATGAAAATTTCATGGAA
ACCATATATTAAAGTTTAAAAATTTCTAAAAAAATATGAGACGTTAAGGGGGTGATGTTT
TATTGTCATGCAAAATATCAAATTGAAACATGTTATGGCATGTGAGGTATAAAAAAAGAT
AAATTCAGCCCTAAATAATGACATTAATGTTTGGCACTATTCAATGCTGATTTTGTTTTT
TCATACTCCCTCTTTGCAAAGCATGCACATGGTTCTAGGTCATTGATTTGACTAACTAAA
TATGCATTATATGTCATAAAAATTATATTATTGGATTCTTCGACGGGTGTAGTTTCCAAA
CATATATTTTTCATCACATATGATGCATATTTAGCTAATTAAATTATTAATCCAAAACTA
CGCGCATGCCCTGTAAACAGAGACAGAGGGACTAGCTCATATCTCGTAACATGTTTCAAC
TTGAATCTATGCAATAAAACATCATCCTATTAACATCCCATATTTTTTCATATTTTTTTA
AAACTTTAAAACATTTTTTTCTCATGGTTTTCACCGAATGTTGGTTTCCGTATGATATTC
TCCCTGTACAAAAAAAATGGTTGACATCTCTCTTTAGTGAATTCTCGTTTGATACACGTG
AGATATGGATGCTACCTCAAACGAAAACGCTATGCCTCATTAGGTACCACGAAGACGACC
TGAGAGACACTCAGAATGAAGGCCAAGCGACCACGGAGATGGACACGACAAAGCATCAAA
GGTAGGCGCCAAGACCTCCCAGCGGTTGGATATCCGGCCCAGGGCCCGGAAATTCGGCAC
CATCAGTCGAGAAGCGAAGGCCGGTTGAAGCACTAGCGGCCGGACATCCGGCCCCTGGCC
GGACATTTGGCGTCGGCCCGGAAATCCGTCCTCTCCCCGGAAATCAGGCACAACCTATCC
AGAAGCATGTAGAAACAACTCCTCCAGCCCCGCACATCCGCCCCCAGCCCAGACATCCGG
CGCGTGCGTGCGCGCAGGAACGGGCCTGAGGCCCATGTACCCCCCTCTCTCTCGCCCCAA
CTCGCCTAAGACTATAAATAGAACCCATCCTTCTCCAGCTAGGGTTAGCATATGTTTGGC
TCTTAGATAGTTGAGCATTGTCCTTCCACTCCCTCCTCCCATGGAGATGATCTCCATGTG
AGAAGATCAAGTGGATGCCAAGGCCCCTTCATAGGGAAGATCCTCTACAGATTTCAAGGC
CCCATCTCTTCGAAGTGGGAAGACTACCTCGTTACCTGTATCCCGTGTTGAAATTGGCTT
GATGCATCCTTGTGTCTTTTTATGGATCTAGCGGATGTGTGATCGAAGATTGTTCTTGAG
AGTTTGTTGATTTTATCTTTGGTTTTCTCCCTTTTCCCCTCCTTGTGTGAATAGATCGAC
CATACCGGGTTTGCCCCGTATCATATTGGTACGAAGAGCCACGTTGATTCACACCTTGGA
GTCTCATCCCCCATTTGCTAGCCAATTTTTGTTTGTCCAGATCAAATTTCGAAAATTCTC
ACAAAAATAGCCATACAAAAATTTATTGGATTCATTGGATTTGAGGAGATTTTGTTGGTT
TTGATTTGTGGATTTTGTGGTTGGCAAGCGGGTCTAGTTTTTCCCCATCATCCCCATCAT
TTTCCTCCGCAAAATCACACCTAATTTTTCAAAAAAATCATGTTCATCCTAAAGTTCATG
AGTTCCTGAGATCCGATCTTGATTGGGCTGCTAGAAATACGGACCGACCCCACACATCCG
GCCCTCGCGGAGCCATTTAGGCAATCTTGCCTCATTTTTCATCCATTTTGTCATTTTCCA
CCACTTTTCATTCCGCAACCTCCGCAAATGTTTTGCAACCTTTTGCATTTGAGATTTTGA
GCCGCAAATTTGCCGCTTCGTAAGGTGTTTTGGCTACTTAGGAGTGGTTCTTCATCGACA
TCGCCGCTCATCATCACCTCGATTCTTCACCTAGCAACTCATCGTTTACAACTCACCGTA
AGCAAGGACGGTAACCGCGATGACACTATGTAGGGTCCGAAGTATGTCTAGGGGGGGTTA
TTAGACTACTTGACNNNNNNAAAACTTAGCCTTTTCCTAATTTTAGTTGTGGGCCAGTTT
TAGCAGTTGTAGTAAGTCAAGCACACNNNACACATGCATATCTAAGAGTATTGAACCGGA
AAGTAAACACATGCAAATGTAAGTAGAGGGTAGNNNNNNNNAGATCAAACGCAAAGGTTG
ACATGATGATTTTTGGCGTGGTTCCGATAGGTGGTGCTACCGTACATCCACGTTAGTGGA
GACTTCAACCCAGTGAGGGCAACGACTATGAGAGTCCACGGATGGCTTCACCCACAAGGG
GTCCACGGAGTAGCAGCGTTGTCTATTCCACCATGGCTTNNNNCCACACAGGACTAGTCT
CACTCGGGGAAGATCTTCACGAACTAGGCGATCTCCCCGCCCTTACAAACTTCATGGTTC
AACTCCACATCACGAAGTAG