morexGenes - Barley RNA-seq Database

Contig contig_1577306

Source Contig contig_1577306

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_1577306 (6506 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_1577306

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_17606	1	415 bp	MLOC_17606.1	Available	Available	LOC_Os07g08000.1, FRAME:-1, EVALUE:3e-38, 13107.m00790 protein expressed protein
MLOC_17604	2	947 bp	AK364039	Available	Available	None
MLOC_17605	4	2034 bp	AK372589	Available	Available	None

CDS Structure of MLOC_17606

CDS Structure of MLOC_17604

CDS Structure of MLOC_17605

Contig Sequence (6506 bp)

>contig_1577306 6506 assembly3_WGSMorex_rbca.fasta
GGCCACGGCGCTGACCCAGGACGACCTCAAGCGGCTCGCGGCGGGGCGCGCGGTGGAGCA
GGTGCAGAGCGGCATGGTCCTGGGGCTCGGGACCGGGTCCACGGCCGCCTTCGCCGTCGC
CGAGATCGGCGCGCTCCTTGCCACCGGCAAGCTCTCCGGCATCGTCGGTGTGCCCACCTC
CAAGCGCACCTTCGAGCAGGCCATGTCGCTCGGCATCCCCCTCTCCACCCTCGACGACCA
CCCCGTCATCGACCTCGCCATCGACGGCGCCGACGAGGTTCAGATTCACTTCCTCTCTGT
ACCGTTTCACTTCTGACGACCCTCAGCGAGGTTCAGATTATTGTCCCCTTAATTTTGTCC
ACAAGAACCATCTACGATCAATTAAACCATGTTCCAAATTTCCCACCGAACAGGTCGACC
CAGATCTTAACCTCGTCAAAGGGCGGGGAGGAGCCCTTCTCCGGGAAAAGATGGTGGAAG
CAGCATCAGGAAAATTCGTCGTCGTCGTCGACGAGACGAAGCTAGTTACCGGCCTGGGCG
GCAGCGGTCTCGCCATGCCGGTGGAGGTTGTGCAGTTCTGCTGGAAGCACAATCAAGTAA
GGCTGCAGGGCCTGTTCAACGAGGAAGGTTGCGAGGCGAAGCTGAGGCTGAATGAGGACG
GCAAGCCCTACGTTACCGACAACTCGAACTACATTGTCGATTTGTACTTCAAGACGCCGA
TCAGGGACGCGGTGGGCGCGGGCATGGAGATTGCGGCCTTGGAGGGAGTTGTCGAGCATG
GCTTGTTCTTGAACATGGCAACTTCAGTCATCATTGCTGGATCGGACGGTGTCAGTGTCA
AAACAAAGTGAGTTTTTTTTTGGGGGGGGTCAGCTACCTGTTGTTCATGTGTTGGGTAAA
GGTAAGTTTACGATTTTTCAATGAACAGGCTATCTGTGTAAAAGAAGGAAATAATGTTCT
TCTATAAATCTCTTTCTTTCTATGTTTCGTTGGTTCTCAGTTTATATTGCCTTGAATGAA
AATCACATTGCGGATAAAACACTACTTTAATTGATTGAAGCCCTTGCGACGGCGAGAGTC
AATGGCAGTAATCTTCTTGGGCACCAATCATCTTCTAGAACAACACTTTGAATATCAGAT
AGTACAGAATACGGCTCACCACAAGCTTATTCAATTACCTAACATGCTACAAACTAAAGG
AAGCAAAAATAGTAAAATATTTTTTGAGAAGTAGTGTCAGCTGCATACCCATCTGATCTT
TCAAGACAGCAAGCGCCAACAACAAAACAGTCTATCCAAGGTAGAAATACAAAAAGAAGA
ACAGCCGAATTACAACTTTATCCAGATATCAGCAAAATCTTCGGATAACTTATAGTATTG
GAGCACATCCATGAACTGCTCTTTTCTCAACATGTCAACATAGATTTGGGGTTGTATTCA
CAGGATCATTTCAGGTCAGAAAGTTGAATTACTGATCCACATGGGGAGGTTACACAGTGG
AACTGTACATCCTGAAGCTAATAAAGATGCAAAATTATTGTGGGTTTATGTTCTCCTTTC
GAGGCCTCTCCTTATAATCCTGTTTCTTTGAAGCTCTTTGACAACCATATGGCTGTCTCT
CTTGGAGACGCCTTCCCGGGTCCAAAAGGCTTTAGCAAGATCCCCAGCTCCTGAAATCTC
TCTTGTTGGAGCAACTGGGCACTGAACTCAAGCAAGCCTTCTAGAGCCTCAGCTCTCTGC
CTGTATGACGTCGTGTCGAACCTCTTCTGCCTCCAATCGGACGAACTTCCGAGATTATTG
TCGACACTGAGCAGGTTCAGATCAGGAGTGTTGGTGTGGCTTTCGCTGTCCCCCCGGAGC
ACTTGGAAAGTGCATTTGTCCTTGGTGATCGATTTGTCAGTGATGGATGGTGGCAAGAAC
TTCATGATGGGACACAATGGATCTTCAGAGGATGCCAGTGGGAATTCAGCAATTCTGTCG
ATTCGAGGTGCGTTAACTGAAACATCAGGAGACTTCAATCTGGTGAGAATGTCGGCGACT
CGCCTCTTCTCAGCAGCTTTGAACATGTGTGGGGAAAGTGATTCTCGCCGTGTAGCTTGT
CTTGTCTGGTCCCCTGAAGACCTTGATGGGGGAGGCTGCTGGTGTCAAAACAACAAAATG
TTAATGCATAATATTTGATCAAAGTACACACAATGCGTCACACATGTACTACGCATAATG
CTTCACACCTGCACTTACTAGGAAAAGGAAATCTTCAAACATGGGCTTTTGAAGGCAGCT
AAAGGTAATATCTGGATGAGATGTCGGATTTTTGGCAAGGGGCGATAAAATGGCATTTTC
ATTTGTGGGACTAAAGGTTGGTGAAATATTTTTGATGAAGAACTAGTAATATGTTGATTA
CATGATTGATGATATCGACTGGCTAGGTCCTGGAAATGTAACAAAATATTCAATGATATA
TGAACAATATCTGGATGTTAACCAAGGGTGTTTGTCTGTGCATAATCGGGGTTTTCTGCC
CCTCCTTTTATCCTATTGTATGGCCAGATACCACATACCTCCTCTTTGTGAGCTGTTCTA
GCATGAAATGTTTTTGCAGGCTCTAGCCGTCTCCTAGGAGTCGAGGACGCCCTTCGTGGA
GTAGGTGCCGGTGATCTTGTTTCTTTTGATTGTTTATCATGCATTGTTTCTTTGACAACT
TCCTTGGTGACCTGGACTGGTAACTGACCCATCTGTTGATGAGGCGGTTCTGAACAATTT
TTTGCTGTTCTGGCAGACTCAGGAGGACCATGGTTAGCAGTGGCATTGTCAAGTTCCACA
ATCCTGTGTACTTTAAATGAATGACTCTTAATATATCGGGGTTTGCTATTGTCTTCATCA
TCAGAGCATGCAGTCTTGTTTTTTTCATGTCTGTTAGGAACTATAGCTGGGAGCATATTG
TGGGTAGGACTTGATTTCGATTGGACTTCCAACACATAGGGCTGAAGATGCGGATGGTTT
AGTAGATCTGCAGCCTGAAAATCACAATCAGTATGAGGCAATGAGATGCGCAAATGAGTC
CAAAAACGATAGTATATTCAATAAAATGGAATAAATATGCTCTAGGAAAATGACTCATAC
ACTTGGTCTGTGATCTGGACTTCTGCGCAGCATGCTTTTGATGAGTCCCCTACTGCATGA
CAGAGAATAGATACAGTATGTTAGAATTTTTTCAGATCTTCATGAATAGCTCACAAGAAC
TTCGTACACGTTAATGTGTTACAAGTGCTTACAATGCACCCGAATATATAGTCGGTAGAG
GAGCGAGAACAGACTTGTTGATCTTGTTTATCAGTGTCTGCATATCCTGTTAGGGAAAAA
CATCATCTGAAATGCAACTTTTGGTGAAACATCGTATGCCACAACATACAAGAAGGAACT
GTAACTTTTCTTTTTTGCGGGGAAGAACGGGTTGTAACTTAAAGAGCATATCAACTTACA
AATGCTTTGAATGCATGCTTCAGCGCAGTCATCTCATAGATGCAGCATCCTGAAAATTGC
AGATGCTTAGCCAAGAGAACAATGCGACAATCGGAGCAACAGATGTAACTGAATATCAGA
TAGGAATGCTTGCCTAGCGACCATATGTCGGACTTGGAGCCATACGGAATATCAGCAAGA
AGTTCAGGGCACATGTAACTGGGAGTTCCTACAACCTTCAGAAGAGACACAATATATCGA
ATCACATAAGCAGCTTATATTAGAAAGAGAAACACCTCCCTACGGATTGAGAAAGAACAA
CTTACCGACGAAGCTAAATCATCAGAAGTCAACACTTTAGCCAGCCCAAAATCACCTGTT
TCAAAAAACATATACATTCAGAACAGAAGATATTGCCGTCAGTTATTTCAGGTATTTTTC
CCAACTGATTTAATTAGAGCATGCTTACCGAGCCGTATATTTTGGTCCTTTGTAAGAAAT
ATATTTGAACACTGAAAAAGGTACAATGCGTGCATGATGAGTAACCAGCTAGGCTTAACT
GAAATGAAATGCGAGTATCAGATAAAGGTTACGAATATAAGAACCTTCACATCTCGATGA
AGGATGTGATTAGCATGCAGGTAGTCAAGTGCCATCAGGAGCTGCACAAGCCACACGCAG
AGTTTCTGCATCCAGGGAAACGGACACGGCAACGGGATAAGATTCAGTGAGTGGAATTTG
CGGCTACTGAACAAGACATATTACAGAGTAGTTGTGCACCTCCTCAGAGAAATGGTTGCC
GTTGGCCTTCTTAATGGCCTCTAGCCTGCACAGGGAAAAACAAAGAACCAAAGTTTTCGT
TACAGGTTCCAAATTCAGTTCAGAGCTTACTTCACAAGTCACGTACATACATGTCCCCTC
CCTCGCAGTAACCGATCACGATGCACACATAGCACCCCTGATGAGAATAACAAAAACACT
AGTTTCAGGCGATAGCGATCAGACGAATCCTCCAGCAGGAACATTCATTTTTCTTATGAA
ATTTTCAGTAGGAACATTGAAACATGCAGGGAGAGGAGATTGCTCACCTTCTCCACCCAC
GAATCTTTGTATTCCACAATGTAAGGGCACCTTACTTTTGCGATGAGCTCCATCTGCATG
AACAAATTAAATGGTGAGTTTCGCGCGTTCATCCAAAGGTCAAACAAACCATTTAAACTG
AATGCTGACATGTGACCGGACACACACAAAAAAGGGAAGAAACAGCGAGACCTCTTGGTG
CGCGGATCGACGGCACCGGACGGTCTGACGGGCGAGCCGGATCTTCTTCAGGACATACCT
GAAACAAGCCATACCTGAGAGAGATGGTCCAAGGATTGTGGGGAGCAAGCAAGGGTGGAA
TTGCACCAACCTCTTCTTCTCAACCTTGTGCCTCACCAGGAGCGCAGAGCCGAAGGAGCC
CTTCCCAATCTGCTCCAGCACCTCGTACTGATCCATCTTCTTCTTCTTCCCTAATCTGAT
TCAGCCCAAATAGAATTGTTTCTTCCCTGCAAAGAACGAAACGGCCCTGAAACATGAATC
GCAAGAAATGGATTGTTACGTTGCACGCGCCGATTCTCGCAAGGAAATCGGAGAAGGTTT
CGACGGACCGCGCCGAAGGAGGAATTCGATTCTATAGTCAGGAAGAAAGAAAGAAAGAAA
GAAAGAAAAAACCGGAGCAAAACTGATGGACGGCCGGAATCGTTACCTCGACTTTGATGA
TCAATCGACGAGAAGGGCGTGCTCTTCGTCGCCTCGCCTGCCTTCCATTTTTAGAGAGAG
AAAGTCTGTGCTCTCTGGTTATGGAGGGATGGCTGGCTGGCTGGCCGTGCTCGCGAGAGA
GAGTGGTGGGGGGGCACACACGGCCGGCTGCATACAGTGTGTTAGAAAGAGAGAGAGATT
TGACTAAGATTATTGTTAATGATTTATGAGCTTATTCGCATAGCCGATTCGTGATGGCGG
AGCTCATACGCGTTTCTTGTACGAGCCGGCTATAAAAGCAGTGGAAGACAAATTCCAGGG
TTTCTTATTCGGAAAAGATATGGTCCACTCCAGGACATGCAAGCAAGTAGGAGTACTACT
AAAAAACTGATGTAGTGATGTATGTCTATTGTTGGGTTATATTGCCTATTTTAGGGCGAC
ACTGGTTTTGCGGTGCTCTTCTGGGTGCCCGATTTCGAGCTCCGCGGTAAAACAAAAAGT
CTATCTAATATCAATATCTACATGTTCGCGTTTGCGATAACGTGTCACTTGATTTGCTGA
TGAAGGGGTTGTTTAAAATTTGCTCGAATTTGTGCACCGCGTGAGAAATCAAGTAATAAG
TAGCATAAAACCACTACATTTATGAGGGTTTCAAAAGCCATTGTTCTATAAGTTTCGCTA
ATAACTGATATCGTGGCGCCAAAAAATTACAGAAAACATTGATAACTAATACACTTCGTG
GCTAGAACCCTCCTCTTTTCGCCCAATCTCCCTTCAGGATGCCAGCGTCAAGGGTTTGGT
GATGACGCTGATCAATAGGCTCCAGCCCAAGGTGACCGGCCTTCCGGACCTCGACCAAGG
TTTCATCGAAGGGAGGCCCATTGTTGAAAACTTGTTCTACGCATCTGAGATCATCCAAGT
CTGCCAGAAGCGCAAGGCGCCCACCCTCGTGGTGAAGCTCGACTTCGCGAAGGCCTTCGA
CTCGGTGATTTGGAGCAGCCTCTTCGACATCCTTGCAGCCTGCGGCTTCTCGTCATGTTG
GGTCAGTTGGGTTGGGCAAACACTGGAGTCTGTCCGTTCTGTGTGGTGCTTCTGAATAGT
GTCCCAGGGAGGTGGATGTCTTGCCGAAAAGGTCTGCGCCACGGGGACCCTTTAATTGCC
CCCTACCTCTTCATCTTGGTATCTAACGTACTTTAATGCTTCATACTCCCTCCGTTCCTA
AATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTACATAGACATATTT
TAAAGTACAGATTCACTCATTTTGCT