Contig Data
morexGenes
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Map Locations of contig_1577243 (2914 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_1577243

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_17595 3 1384 bp MLOC_17595.1 Available Available LOC_Os04g58630.3, FRAME:+2, EVALUE:0.0, 13104.m06161 protein DNA mismatch repair protein MSH3, putative, expressed





CDS Structure of MLOC_17595






Contig Sequence (2914 bp)

>contig_1577243 2914 assembly3_WGSMorex_rbca.fasta
ACCCTGCGCCCTCGTTCGTGGCGGCTACTGGCCCCCCGGTCCCCCTATGCGTCCCCCCCC
CGCGCCGCGTCGACGGGGGGCACGTGGTCGGCGTCGTCCGCGAGACCGCGACCGCGGCCA
TCAAAGCGGCGGCTGCGCGCGGCGGGGGCGGCGCGGCCCCCTTCGCGCGCGAGCTGTCGG
CGGTGTACACGCGCGCCACCATCGAGGCCGGGGCCGGGGAATTGGAGGGCGGCGGCGCGC
CAGAAGAGGGGAGCAGGTACCTCGTCTGCGTGGTGGACAAGGAGCTGGATGCCGTGGGGA
GGGAGGGATTCGAGGTGAAGGTTGGGGTGGTGGCCATCGAGGTGTCCACCGGCGAGGTCG
TGCACGGGGAGTTCATGGACGGCGCATCCAGGAGCGGGCTTGAGGCCGTGCTGCTTGGCC
TGGCACCCGTTGAGGTCATCCTCGGCACCCCGCTCTCGTTTGCTACGGAAAAGGTAAGTG
GAGTCTGCCTCCTTTTTGGAACTTATATATGTTTGTTAGTCTGATCGCCAGCTGAATCCT
TGTTCGGTGATGTGCAAAATTGTAGATTCATGATATTCTGTGTTTCACTTTCACAATGCA
CACAATAGCTGAAGTTGCACTGATGTCATGAAACATTCATTAGTAGATTGTACATTCTCC
GACCCCTTTCAGTTCACAATCCATAAATTTACTCGGTTTATGTTTGTAGGATTGTGGTCA
TGCTTAGGCTATATGGCAACTCATTTAGGTTTACTGTGTGACTCTTGTGTGTGTGTGGCT
CAGAAGATCTTCAATTCCGCAAACAATCATCAGTGTAGCTGTAGCTTGGCGTTAATAGCT
ATGCATTTACCATTTTCCGGTTCCACAAGCCTGTTTACCCATCGTAATAGCTTGAGTTCA
TGCAAATTGTTCCTACGGTGATCTTTATTTGCTTGTCTCTGATTACAGTTTTTGGTTCTT
GCTATTTTGAGTTAGTGTTACACCTTCTAGTTTCATAGTGCTCGAGATTCCCTGGTTAAT
AGGTTCCTCCATTTGTTGTCTAGCTGATGAGGGCATATGCGGGACCTGTCTCTAACGTAC
GGGTTGAGTGCACTTCGCGTGATTGTTTTAGTGAGGGAGGCGCTTTAGCAGAACTGATGT
CTTTGTTTGAGAAATCGGAGGCGATCAAAATAAATGAAGAGGACAGCAATCTTCATGGGA
TGGAGGTACTGTTAGCCTTCATAACTGTTCTAAATGGAGTTTAGGTAATTAACTGCCGCC
CCCCGTGTGGCTTGATAACTATAATGTGGTTTAATAAGTTACATTTGTTCGCATAGGGTG
TCATGGCTATGCCAGAGCTAGTTGCCCAAGCAATGGCATTGAGTGTTCGCTATCTGAAGG
GTTTTGGTATGGAGAGGTTAATCTGCTTTGGCTCTTCGTTCCGTCCATTTACTGCTAATA
CTGAAATGTCTCTATCAGCAAACGCTCTTCAACAGCTTGAGGTACATTCTTCTGTAACAC
CATGCAATTATTTTTCTTCTTTCTGTTTGGGTACCTGTGACAATTTTGTAGACGGAAAGT
TGTGACCAGGGGAGAACTGTAGTCGCTTTCTTTCTCCTGAAATGTTTCTTTGAAACTCCA
GACACCAAAGCACATCTGCTGTTCGCTTTTGTGGGCATGCCATGCCCTTGAGATTCTTCT
CCATTCCTTTTATGAGGTGACACCTGGATTGTTTTCAGGTATTAAAGAACAACTCAGATG
GTTCAATAGAAGGATCACTGTTCCAAACTATGAACAACACATGTACAGCTTTTGGATCTA
GGCTATTTAGACACTGGGTAAGCTGCTAAATCTGGACCTGGCCATGAAATGACTTTCAGC
ATAATGTACCATTTTACACTGAACAATTTGTTTTTATGTCAACTGTTTTGTTAAATGTCT
TTCTTGAGCTTGTGCTGTTCTTGCAGTTGACTCACCCCTTATGTGATAGAAATCTAATAT
GTGCTCGTCACGATGCAATCTCTGAGATCTCTGAATCGATGGGATCACGACAAGATCCTG
TTCACATTCGACAGGATGAAGAGGATGGGTGCTGCGCAGCTTCCGTGCGAAGTGATCTCA
GCACCATTCTTTCATCTGTTTTAACAATGTTAGGAAGATCACTTGATTCTCAAAGAGGAA
TAACAAGAATTTTTCACTGCAAAGCCACAGCTAAAGAGGTAAAAATATATTCCTTTCTGT
GTTCTAATTGATTTTAGACTAGAACTGTTGCCCCAATTATGATTGACCATTATAGAACTT
GCACATCATACCTGCTAGTAGTTTTTCCCTGTACTTCTTTCTTTTTTGCTTGTTTTCTTC
TATATATCTGTTGAAACTGTGTTCCACTATGAAATATACAAATCCGTGAATTCAGTTTTG
CTTGCTATATACATACACATTTTTTGTTGGAGAAAATGTTTCTATACTCCTGTTGGCTCT
GAACTTAAAAGTTTTGGTGGTGTTTATGCGAACTTAGTGTGATGTTGATGTCTAACTGTC
CATAGTTTGTCGCAGTTTTTTGGGGTCATCCAGGCTATCTTGGAGGCTGGAAAGCAACTG
CGGAAGCTTGTTCTCGAGGATACTGAGAACGTGTCTTCTCAGCATAGAACTGTCCACACT
TCTTTGTTGAGAAGGCTCATAAGTACAGCTTCATCATCTGCTGTACTTGCTAATGCTGTG
AAACTTCTGTCGTGTCTTGACAAAGATGCTGCTGCTCAAGGAGATATGATAAACCTGTTC
ATTTCATCTGCTGACCAGTTCCCCGAGGTAAGGGCTCCTTTGATTCAAAGGAATTCTATA
GGATTTTTAGAGGATTGAAATCCTTAGGAATTTTTCCTACATTGGTCCTTTGATTCATAG
GATTGGATCCATAGGATTTTTTCCTATGAAATCT