Contig Data
morexGenes
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Map Locations of contig_1577176 (5147 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_1577176

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_17585 2 2210 bp MLOC_17585.1 Available Available LOC_Os04g45200.2, FRAME:-1, EVALUE:0.0, 13104.m04530 protein DNA binding protein, putative, expressed





CDS Structure of MLOC_17585






Contig Sequence (5147 bp)

>contig_1577176 5147 assembly3_WGSMorex_rbca.fasta
AGGGATTAGTGGAGGGGATCAAATTTCTCTTGGTGGAAGTGTAGATCAAGGCCCTCTCAA
CAAAACCNTAGAATATCAACAAGTTTTGCTGGCTCGGGAGAGAGATCGGGCTAAAATGGA
GCTTGGAGCAACAATGGAGCTTAGGGAGTAAAAGGCAGGGTTCTCGCGGAAGAAGAAAAC
CATTATATAGTGGGGGGGGGGGTCTGCCCGTTACCCACCCCCCGTGCATGAGCCAGAGCG
GTACTACCGCTCCTGAGAGTGGTAGTACCGATGATAAGCGGTAATATCGATGATAACCGG
TATTACCGATCGGAGGAGTGGTAGTACCGCTCAACCAAAGGGAGGCCAGGCCAGAACCAC
AAAGAACGCCTAGTACTGCCCTGAATGGTAATAACAAGCGGTAGTAACGCTCCGCGGGGG
TACTACGCCCAGTACTACCGCAATACTCGTCCACAAAAGTGTTCGCACTTTTGTAGAGCG
GTACAGGCCAAAGGCACCAACAGAGCACTATCGCTGAGAGCGGCACTACCGCTTAAAAAC
TACCAGGCACGGCAAGGCAAGGTAGAAAAGCTCCATCGAAGCTGAAAAGGGGGTGAGGAA
GAAAGTGTACGTGATGGTTTCACCGAGATTTTCCAAAAAGGATCCCCTCTTAATAGTACG
ACTTTTCCTACGGCCCAAGTCCACCGACAACGAAGCATAAGAGCGAAAACCGTCTTCTCA
TCAAAACAACGAGGGGCAAGAATCGTCTTTGTGCAAACCTAGGAAATACTTGAAATGCTT
ATTGCATACGATTAGTCCGCAAAAGTATCGTCATCAATCACCAAAATTACTGGGGTAGAA
ATATGCCCTTACAGCTGCGACACGACGGCAACGCGGGCGCGACTCCATGACGACAACGGG
CGATGGTGGTTCCCAACGAAGCGGCGACCGAATGGGTCGATGGTGGAAAGAATGGGTAGG
CGACGGAGGGTGATGGCCCGATTCGAACGACGGCGGGCTTGCGGCTAGTGCGGGCGGATG
ACGGGTATGCGGCACGAGGAGGCGAAAAACAAGCTTGATTTTAAAAAGGGCCATTCCTTT
TTGGGATAGTTTGCTAAGGAAAGTTGTACGAAGGCAAAGCGGACACCGGAAAAAGGTAAC
TTTGAACATCGTTTCAGTACCAATATTCCCGCCTTCAAGGGCATATGAAGGAGCTCCTAT
TGCACAAGAAAGTACAAGAGAAATAAACTTTTTGGGTAGATGACGTTACTGATTAGCCCG
CTAAGCTGCTGTGTCAAACCTGTTATGACAACTATTTGGTAAGCGGGGATTCAAATCAAA
CAATAAATACCAACTGTAAGTGCGATGGATAGTACTTGGTGCCTAATTTCATGGGTACTA
TATTTCTTGGCGCCTACCAACGAAGTTTGAGTTCTATCAGATCCTGCAAGCAATTGATAT
CCTTTCTGTTACAATGCATTATTTGCTCTATCCTAACTTGATAGCCTGGAAGACTCCGAG
GATCCAAAAAGACACCATCCAAAAAGGGCCTTTGCGATCCTAAAAAAACTGAATGCTCCG
TTCAAATTGGGATTTAATTTGAGCATCCCATAATGACGCGAGGAGGCAAAAAACATCGGG
GGAGGCGACAACATCATCAATGTGGCCCGATAGCTAAGGCAAATGATGGCGGCGGCAACT
GTGATTCTCGATGGAGTGGTTGCCGGATGGGGTGATGATGGACAAAACAGGTGGACTGAT
GGAGGGGGTTGTGGAGGCGGAAAATGATGAGGATGCGGCATAAGGCCACTTCCAATGCAT
TGGTGTAAAATGAGGTGCTAAACACATTAAAAAAATTAACAACTAAAGTCCCCAATGCAT
AGTTGATTACCTTATTATAGCTAAGCATCATTATTTAATGTTTTTCCAACTAAAGTTGTG
CATGCATTGATGCATTTCTTTTATTTAATTGTTTTATCTAGGTTCACACGTTTAGCATTG
TTTCTTCCTGAGATTAGCACATTCATCTTTTTACTATTAATTAGCTTGTCACATCAGATT
TTTTATCTATGTAACAGTCTTAGCACCGGTATAAGATGGAGCATTGAGAGTAGCACGAGG
AGGTGGAAAAAGGCGTCCGTGCAGGACAGGGTGACAACATTGGTGGTCGCCGGAATCGAA
AATGTGCCAGCACGGCTCGAGGGAAATTTCATGGGTGGTTGCAAATGCACGCTACGGGTT
TTGGAATTTGCGGCAGCCACATTGCGCTGTAAATATGCAATGCGAGGGGCTAATTTAGTA
ATTTTTTGGGCTGCCTTACTTTTTCTGTAGCACTGCGTGCAGATACATAATGCGTTGGAG
CATCAATTTTGCCCCCAAATGCCCTAAAATCAGCTTTTCGGTCATCCACCCTATTATACA
TCATGTGTTAGACATGCTCGAAAATCAGCCTTCCGGTTATCCACACTATTATACATCATA
TGTGTTAGACATGCTCGAAGTGGTAGTATAACGACATATGCACGAAATCCATAGAATCGA
GTTTGGTTTCGCAACGATTTCTAGAGAACGCAATCTGCACTCCGAAAATAGCTAAATATG
AAACTTGAATTGCATTTCTATATTTTAGTATTGTTTCTTCTTTTCAAGTGATTTTCTAAA
TTTTACCTGTGCCTACGCAACAGAACCCACACGCACGACACGCCGGGGAGTGTTGAATCA
ACTCATTTGATCGTAAGCCACGTGGTTGAGGGTTTCGCCGTTTCTTTTTGACATTTGGAC
CATTGCTCTCTGAAGTTCAACAGAGTAGGCAAACCGTACGCATCTGACGACACATGGTTA
GGTCGGTGTTTGGCAACTTTGCGTAATATGCTTCTTGATCTGGATCAAGAGGACTACCTG
AGAAAGACATAACTTGTGTTTTACTTCGCCTGGTTGCCACCACACATGGACACATGACAC
ACCCAACCAGTTGAGATTTCTTTAATACCTTACACACGAACGTCACCCGGCAGTGTACAG
CATGTGAATGGAGGAATATTCTACTATTCAAGTAAAGTAGTTCTTACACCCATATTCCAC
TGTTCAGCATCACGCCAATGTACAATTTTCATTTTATATGTATACTACAGCAGTCGCAGG
ATTCAAAGTTTCTATCAGTCAAACACCATTTTTATTCTATATGCACTACATCTGACAAAT
ACAAATGCACCAGAACTAGCATGACACCCATTCTATTGTGCAGTGAGCAGAAGCAGAGTA
GCACAAAGGAACCTACTTGTTCACATCATCGCTCGACCCATAGCTTGGATTACTTGCGAA
ATTGAGCCCAGCAAACCAAGCAACGCGCATCAACTGAATTCCAAGGACCAGCACCCACCA
GGTCACCAAGCCACGGAGACTCTGCACCATCCACCCAGGGGCAGCGATCTCGCCGGCCAA
CTGGAGGCCCCTCATCAGCTGTAGCACCCGGTAGCCCTCGTAAACGACTGGGGCCACCAA
CCAAACCGGCGATTTCCAGTGCCATGTAAGCGTCTCGGTCAGCATCTGCACTGCAAGTAG
TAATAGATATGGCCCAAGCAGCACCAAGAACGGGATGAATGGTAGATGCGGCTGCAGAGC
TCCCCGGTGAGACGCGAAAAGCAGGGCCAAAGGAGCAACGAAGCCCAATATGCTGGCAAT
TAGATTCCACATTCTGTAAGAAGTTGGGATCTGCCTTGTCAGGTCGAATGAATTGTTCTC
CGGACGCCCACACGCGTCGGCCATAAGGAAAAACAGCATTGCTCCCATGTTAAAGATGCA
GTCGAGTCCCACTAGGGATAAAAGGCCAGCGATGTTAGGGCCAAGGAACACTGAAGGCAA
TGGCAGCCACAAAGTTGGAACTATACCGGTAACCAACAGAACCGAAGGCCCTAACAGCCA
CATTGGCAGTTTAAATGTTGCTAGCTGCCTAGAAGGTTCATTCTGCACGTCCACAACATC
CTGATCACTCTGGAGGATTGGAATTTCTGGAGCTTCTTCTGTATCAATAGCTTCAACAAC
ATTTGTTCCCATGATAATGCTGGCATCGTCCTCTGCAGAAGCATACGGAAGAGAGGCCTC
CCAAGGCAAATTCTTAGTGCATCGCAATGCAATGTTTTTAAAATGGCCTGACTGCAAGGG
GCTCCAATGAAGCGACCTGGGCAATCTCGTAAGTCTATTCTCATGGACCTGCCTCCTAAC
ATATGCTCTGTTTAGTTTTATCTGTGAACAAAGCAAAGAAGCCATGGTACAGGACGTCGA
ATTCCAACACTGCAAAAGAAATAAAGAAGTGAAACAAATTAGTGCCGCCGATGTATGGAC
CGAAGTGAGGTATCTAGCAGTTAAGATAACTCAAACACAGGCTAACAATGAAATGCAATA
CAATTAGATGTCAGGTTGACAAGAGTAAAACAAACTCAACACTTAGATCTAGTAGTTAGC
TTAGACGCTTGCCCTTTTATGTCTTGGTACTGAACCATTTATTAGATGGTACTTAACCAA
AGATTATCAGTCCATGTTATGAAAGGAGAGCGTCAAAGAAAAAGTAATGTCACAACGACT
AACTGCAGAATCCACAGGCAGATCAAATATTCGACGATGGACAGAAATTCATGATTGCAG
TTACTGGTTTGAGATACTGCTTATTTAACAGATTTTTTTAGTAAAGAACTGCAGCTTCAG
CTCTTATGATTGTTTTTGCTACCTGATAATTATAACTTCTAACTGGAAGCATACTTTGAC
TACCGAGATAGGAAACATGGTAAAAATGCAGCCAAAAGATGGAACTCAGCTGCACCTTAT
TACAGACAAGTTGCTACCAAACCTAAAGTTCGACAAGAGTCGAGTAGGCTAACTATATGC
CTCTAAAGCTCCAAGTACAAGACAGAAGCCAAAGACAAATACTAAGCACTTAGGAATAAC
CTTATAAATTGCAAGAATTATATAGCATACATGAGATTTAACATGTCGTAAATACAACAA
AAAATATAGAGTATGTATGAGTTATAACCCTAGACATATAAACTCCCCCGCTTAAATTAC
ATGAAATTCAAGAAAGTAGTACTTCCTCCGTCACGGTTTAGAAGGCACGCTTGAAATATC
TTTGGGACCAAGGTAGTCATCGATTGGTTGTGAGATGTAGCAAGTGT