Contig Data
morexGenes
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Map Locations of contig_1577122 (4581 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_1577122

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_17573 3 2031 bp MLOC_17573.1 Available Available LOC_Os03g07570.4, FRAME:+2, EVALUE:0.0, 13103.m12933 protein aminotransferase, putative, expressed





CDS Structure of MLOC_17573






Contig Sequence (4581 bp)

>contig_1577122 4581 assembly3_WGSMorex_rbca.fasta
TATCATATGTTAGTATCATAAGATATGTCATTTATTGTTATGCATAACACATAGTAGCAC
AACATTTAATATNNNNNNNTATCATAATATGATACTCAATCATCTTTTTCTTCATTTCAG
ATCCAAAACGAAGAGGGGAAAGATAATTTCAAAATTGGACAGCTCCATATGGATCCATCG
ATGGAGTAAAACCACCTTGGTGAGCTTGTTTTCCTTTTCCTTTATCCATGCTATTGTTCT
AGATTCTGAACTTCTTCCATGTCTAAGCACACTCCACCTTGCATGGGGTTAGGGACGGAG
GAAGGAGAAGAACGAGGGAAAACTGGGAGGGGGTGAGGGCCGGTGTGTTCTCTCTCACTG
GTGGGATGGGTTTAGGGGGTTTACTTGCAAGATGAAGAAAGAACTTTCACGGTTTAGAAA
AGTTACTGTCGTGTAGCTACAGAATGTACTGTTTTTGTTATTTTTTTGTTTGTGTCCAAA
TATCAAACCGTGATCTAAGAGGTAAAATGAGCCAAACAAATAAATACAAACAAACAAAAC
CCAAATAACAAATCCATCACGAAAACATTACAACGCAACATGAAAGCGATAAAAAACGGA
CCTTATTTAGTTGGGGTCACCTCAGTCAAGACTTCGCCAAGTCTCAGTCGACTCATAGAC
TTACAAAGGCCTTTTCTAATAAACACATATGGTGTCACCACGCAAGCATGAGCATATCCA
CCCGCTCAACACATATGGTGTCACCACGCAAGCATGAGCATATCCACCCGCTCACGAACC
CCGACGAGATTCCTTCTCGCGTGGCCGCACGTCAGTGACACGAGCGGCCGTCAGACAGCC
CGATCCCGCACCGATAGTTTTAAGTTTCTCGTGGCGCATCACTATCGGAGTGACGGAGCC
TGAACCTTTTCCACGTCACTGCCAACTACGGGCGAGCCCGTGCCAGCCGCCATTGGCACC
ACACCAGCACCCCTCCACTCCACCAGCACCAGACGGACGTCAAGACCCGTGCCAATCCCA
CACTCCACTCTCCTTCCCACCCCACCTAACCACCCCCGAGCTAATCCAGCTCCGTCTCCC
TCGCTGTTCTGTTGTAGAGCACCACAGCTCCTGCCCCTAGCTAACTGACCCGGGCTCATG
GCCGCCTCGCTGCTTCGCCGCGCGTCCGCCGGCCGCGGGCGGTGTCCCTCGCCGGCGGAG
GCGCTGCGGAGGCTGGTGTCCTCGGAGGCGGCGCCGGAGCAGGCCCTGCCGCGGCCTCTG
CCGGAGATGCCGCCGTTCGAGCACCGGCCGAGCCCGTACGCCGGGATGGGCGGCGCGGAG
ATCCTCGAGAAGCGGAAGAAGTTCCTCGGCCCCTCCCTCTTCTACTACTACCAGAAGCCG
GTACATACATCGTATACATATCCTCTGTTGCTTCGTATAAAAAGACGAAATTTGTGCTTG
AAAGCAATCCTTTATCCTTTTAGTAGGAGAATAAATAAATTTTGAAGTAGGGGATGTTGT
ATGAACTGCATCAATCATCAGGTAAGATTGGGTTTCGATATATTTTGCCACTCCCATCAC
CGTCTCGCTCACACGCTGTCACGGGGCCCACATGTCAGTGAAACATCAAGCGACCCATTT
TTTCTTTTTGAAGGCAATAGATATCAAGTGATACCTATTAAAACGCCGCTAAGTAACAGT
GCCAAATTCCCAAAGGCCCTGATCAAAATCAATGGCACTATGTGTGAAATAGTGTGGAAG
ATGTCTGAAATACTTATGGCAGCATATATATAAAATTGTAGTACCATCTTGATTCCATTC
TGTTCTGTATTCGCAGCTCAACATCGTCGAAGGGAAGATGCAGTACCTATACGACGAACA
AGGCAGGAGATACCTTGATTGCTTCGGAGGCATCGTCACGGTGTCATGTGGCCATTGCCA
CCCTGATATCGTCAACGCCGTGCAGGAGCAGACCAAGTTGCTTCAGCACACCACCACCAT
ATACTTGCATCATGCCATAGTCGAGTTTGCCGAGGCGCTTGCATCCAAGATGCCAGGCAA
TCTCAAGGTAAAGAAATACTTCCGTCCTTCGGTGGCTCAGTGCTACTACAAGTTACAGCA
TGGATGGACTCAATGACGAGAAGGGAGTGTGAGTGTCGCATGTTTTGGGATGGTATGCAG
GTTGTGTACTTCGTCAATTCCGGGACGGAAGCGAATGAATTGGCAATGTTGATGGCTCGG
CTGTACAGCGGGAATCTCGGTATGGTTGCTTTGAGAAATGGATATCACGGTGGGAGTGCT
GGAACAATAGGTCTCACCGGTTTGCAGACGTGGAAGTACCCGATTCCTCAGGTATGTATC
TGATTGTTAAGACATACAAAATAACATAGATTCTCAGTGCAAGTCTTTTTTTCCAGTTCA
ATTGATGTACTTGAAAAGATTGAACTATTGTTAGAATTCACATTTTGGCGATGCTAAAAT
TAACACTGAAGCACAAAAGTATTTCGATATCCGTATTTTTTTTGTCAGGTGCATTATGGG
CTTCATCTCGGTTAGTTAATCCACTCAAGTTGTGTGCAATGTGTTGTCGTAATATAATGA
GTGCCCCTTATTCCTTTTCACATAAAAAATAAAAAAATGAGGGGAGGCAACCTATAGTGC
GTTCTTGCGCATTGTTTCAGTATGACCATCTGTAGTTGTTTAAATTCTTTCTTTTGTATG
AGCCATTTATTTATCAATCGCAGGGTGAGATTCATCATGTCATGAATCCGGATCCTTACC
GTGGAGCTTTTGGGTCTGATGCTGCAGCTTATGCCAGGGAAGTCGAAGAACATATAAATT
TTGGCAGTTCAGGAAGGGTTGGAGGTTTTATCGCAGAAACTTTCCAGGTATGACCAATTT
AAAGTTGTACATTATACTGTAAAAAACTTATAATATAGGTTTTATCGAGCTTTTATCCGG
GTTTTTTTCTTATACGGGTGAATCCAGACGAACGTACTCATATATCAGCTTTCCGATGAA
TGAACATGATTGCAGGGTGTAGGAGGTACTGTTGAACTAGCTCCTGGATACCTGAAGTCA
GTCTATGATACTGTCCGGAAGGCGGGTGGTGTCTGTATAGCTGATGAAGTCCAAAGTGGT
TTTGGCCGTACTGGAAGTAACTACTGGGGATTCCAGACGCAGGACGTCATCCCTGACATC
GTAACGATGGCAAAGGTTCGAAAAACTCTGCCTCAAAGGTTTCATTATGTTGACAGTATC
ATTTCAGTACTAATGATTTTTTTTTCTTTATTTCTAGGGAATCGGTAATGGTCTACCACT
CGGTGCAGTTGTAACAACTCCTGAGATTGCTAGCGTGATGGCTCAGAAGATCCAGTTCAA
CACATTCGGTGGGAACCCAGTCTGTTCTGCTGGTGGATTGGCTGTGCTTAAGGTTCTTGA
CAAGGAGAAACGCCAGGCGCATTGCGCAGATGTCGGCACTCACTTGGTGGAACGTCTGAA
GTCGCTTCAGCAGAAGCATGAAAGTAAAGTTTCCCATCTTTTGGTCCATTTGAAGTAGTA
ACCATTTCAGTCAACTATTTGATTTTGGATTCGACTTGATGTAATCGGATCGATGATTAT
CCATCCCTTGGCCTTGCTTCTGCTCAGTCATTGGAGATGTCAGAGGAAGAGGGCTGATGC
TTGGGGTGGAGCTCGTCACTGACAGGACGGAGAAGACACCGGCCAAGGCTGAGACCGCTG
TTCTGTTTGAGAAACTCAAAGGTAATAGCCCACATTCCCTACCTCCATGATCGCGAAATG
TTTAAATCTACAGCCCCTCATATGGTTCTCTTGTTCTACCAGATCTCGGCGTTCTACTCG
GCAAAGGCGGTCTGCACGGCAACGTCTTCAGGATAAAACCACCGATGTGCTTCTCCAAGG
ACGACGCAGGTCAGTGGCTCCAACTATCTCCACAAGATACCCGTTGCTTTCTGCATTGCT
TGTAGTCGTAGAGACTGACTGACCGGACAACGGATCGGATCCTGCAGATTTCTTGGTGGA
CGCCATGGACTACGCCATGTCAGGGTTCTGAGGACCATGAACGTTCTCGCGCCTGCTCCT
GAACAGTCGCCGGGCGGCGGCGCGGAATGCATGAATGCTGGTAGCATGGTACGTGCTCAT
CGCTGGGATGCGTCACTGCGTGTTTACACGCAACGCATGTGTATGTAATGCGTGTTTGCA
CTGCTTGCCCGTGTGGCTATATGGTCGTGATGGTGGAACACAACCCCTACACAGGGATGA
ATAAATGAAGGGGGGAAAGCATCAGAAATGCGCAATGTGATGTCTGGCTTATCTGCTGTT
GTTTTGCAGGGATATCTGAAACGAAATGATCAAATGGTAGAAGTTGTAATCTAAATGTTT
TCCACGCTCGTTCTCAATGATCATATCGTGCATAATCACGCAAGTAGTCGTTATCTATCA
AAGGATCTTTTTATCCCAGAATCTAGATGGTCCTCACACAATAGCAAATTGAGATTGCAA
AATCCCGAAAGCCCTCTCAACATCTTTTCTAGCGGCCGCTTGTGCATTGTGAAAGATGAG
TTCTTTCTTACCTTCGGGTTT