morexGenes - Barley RNA-seq Database

Contig contig_1576982
Source Contig contig_1576982
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1576982 (7930 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_1576982

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_17531	1	1070 bp	MLOC_17531.1	Available	Available	LOC_Os01g15448.1, FRAME:+3, EVALUE:1e-52, 13101.m01706 protein expressed protein
CDS Structure of MLOC_17531

Contig Sequence (7930 bp)

>contig_1576982 7930 assembly3_WGSMorex_rbca.fasta
GGGCCCCGCCCAAAGGCCCGTTTTCCACTAGTGACCTACCATTGTGGGTAGACCCAAATA
AGTGTCTGACAATGCCTCAGTAACAATGTCAAGTTCTCTGCAGATATTCTCTCTCACACA
GACCCCGGTATTCGGGCTGAACAATATACTAGATTTTGCAGTACTTACAACTTGCCCTGA
GCTGGTACAATAAAGATCCAACACCTTCTTAAGATTGCTTGCATTCTGGGCATTGGCTTT
CATCAACACCAACGAGTCATCTGCAAATAAAAGATGTGATACAGCGGGTGCACTCCTACA
CACCTTAACACACTCCAATCCTCGAGATTCCTCCTCGTGAGCTAATAAGCTTTTTTTTAA
GAAGTGAGCTAATAAGCTTGATAGACCTTCAGAGCATATTAAGAACAAATATGGGATAAC
GGATCCCCCTATCTCAGGCCTCTACCGGGCACAAATTCGTTCGTCTCCGTATTATTAGAA
ACGCACTCTGTACGTGACCGAGGAAACACACTCCATATTCAACACCTCTTCAATTCTTCC
TCTAGCCCAATAACCAACCCGTCACTACGTTCTCCCTCGAACAGAGTCGCCCCGGTTTGC
AGCGCCGCACCACGGGACCTCTCCGGCCGGCGACGACAACCGGCCTCCGCCGGCAAACGG
CGCACGCAGCGCAGGTAAGCTTCTTTCCCTCCATCCCCGCCCCCAACCCGCTAAATCCAC
TCGCCCGCTCGGAAAAACAAAATGAAACGTCTCGTCGGCGCCGCGTCCGCCGCCTCTCAC
GCGAGCGAGCCAGCGGAGGCGCTTTCTCAGGCGACCCGTCCGCCGCCTCCTCCTCCTGTG
CGGGTCTTCGTCTCCGGCGACGCCTCCTCCTGCGGCGTCGCCCGCGAGGCTAGCCTGCTT
CCTCTTCCTTCTCGCACGACGACATGTTTTTTTTTTTAGGTTTAGGCGATTTCGGCCATG
GCAGAGGGATAATTTTTTGTTCGGCGAACTCAAGGAGAAATGAAATTAACCTCAGAGTGT
GCTGTGTGGAAGTCCTATGCTATGCAGTCACTAACATTAGGGGGAAGTTGTCAGGCATGC
CCAACTGCCCATCATTATTTTCTGGATCAAGCATATCATCAGCCACATCACTGCCTTCAG
ATTCAGTTTGTTGAGGCCACTAGCTGCTTGCTGCTTCTGGTACTTTTTTTTATTGAGAAC
AAATAACAGTCCTTCTGTTCATGCATTCAGGAAGAAGGAATTGTCTTCAGTTTTTTCTGA
AACTGAAGCTTTGTAGCCGCTAGAATAGCAGTCCTGTAGTGCTGTTCTCGTAGAATAGCA
GCCCTGTAGTGCTGTTCTTGTATTTCCATTTTCACCTGTGCAGAGATTAAAGTTAAGTAG
GTGAAAATTAATCTTTGTGATGATGATTACTTGATAAAACTACCAAGATTAAATTACTGA
ACTATGTCTGTTATTATCTATGTTGGGCGTCATCCGCCACAAGGACCATTTGATGAAAAT
CTTGCTTGTAGAGTTTAGAGAGTAGACTCTTTGCTTTTAGTTTCTCCATTCTGTTGCCAT
CTGACCACAGGCTTAAAAATAAATGAGCAGGGAATTCTTGTTGTTGGTATGAACTCTAAA
CATGTGAGTGTCCAGCATCATGACTCTTGATACTTGCCCTATATTTTATTTTCCTAAATC
TAACAGTATGTTTTGTATAATGTGCATAAGATTTGTAAGGACGAGAACTTGTTCACATTT
TTTCCCTTCTGGAAAGAATCTGATTGGAGTGCAGCTGTGCATATTTAATTATTTATAGCA
TATATTCAGTAAAACACAAGGTATCTGAGTAGACTAATGGTTCATTAATCCTTGGTAGGA
TGCTACATGGATGAATCTAATCCTGTAACTCATTGGATAAGTTAATAAGATGGTGTGGCT
GCTGTGTCCTGTGGAGTACTATGTTCTATGTTGCTTTCTGGATTTTCTTACCGCTCAAAC
TTTGCAATCCTTTTACCCTGCTACCAGTTTGCCTTATCCATAACTTGGACTGTGTTTTGA
TGTTCTTGTTGTTGTATCCATGTGAGAACATTCGTGCTTTTTCATAACTTGTGAAGCTGC
TACTATTCAAATTTTGCATTATGCAGTAATGGTGAAGCTCTGTTTGCTGTAAAGTTACCA
ATCCTATTTCTAAGGGATCAGAAACCATTTTTTCTGTCGCATATATGGGACAATTCACTT
ATCTGGGTCATAGAAATGGATGGGAGCAATCGATTTTAGCTTGAAACGATTCTGTGAAAA
ATAACCGAGATATTTTCTTTCCAAGGGAGTATGGGACTTTAATTGGGGCATACTAACAAT
TCATCCAAGACCTAAAGTAATGTTAGTTCATTCTTTAGTACACTGTGATGATTTTGTTGT
ATCTGTATGTCCAGTGCAACTGGCAATGGCTAATCCAACTCTAACCTGCCACTGTACTTG
TGTAAGCTGACAGAGCTTTTGCCCTATTGTGTATATTCTTCACAAATCTAAATGTAGCAG
CAAGGTATTTGAATTATAATTGCTATTATTTGAGCATCTTTCATATGCTGCATGGAGACC
GATTCTGATTAACATTTACGTATAGGCAGTTTCAGGATGGGTACTGAAGACACTAAAGAT
ATGCTGAAGAATGCGGACTGGAAGACAGTGAGTGGTCCCGTTATTACCGAGTCAAGCCAG
CCGGTTGTCAAGAAGCGTCTTCCGAAGAAAATCAGACAAGTCCCTGAGTGTTACTTTCTG
CCTCGACGATCTTTGCCGTCTGCATTGGCAATCTACGGTGCTGTTTGTGCTGCTGGAGTT
GGTACAGGGATGTTGCTTGAGGTTTGGATAAACAAAAAGATCAAAGGTATGATCCTGCAT
TTCATGGCCGAACCCTCTGGATGAACCACTTATCATAAGAAAACTACCCGACCTGGAAAT
TTGTGATCTCGTACTGTACCATGGAAATTGTTGCATATCTTTTTCATCCTCATCGATTGT
GTTTTTCCACACCCTCTTACTTTTTGTCGATTGCTGCATGCAGAGGATGGCGGCGTTGTC
TGGGAGATGGGCAAATGATGTTGATGCACTTTGAGTTGGTAACAATCTGGTTTGGCAGAC
TCACTTGGCTTCACTTATGCTGCTTAAGCTGTATCACGGAAATAAGCGGAGATTTGTTGT
TTCAGACTATCTGTTGAGACTGACAAACGCAGACAATGTTTTCCGGTGTAATTGACACAA
CCTTGTCCCTGTGTTTCTAGTTTGGTTGTGCAAGCTGTGTGATGGTTCAAACTTTATATT
CGGCAAGCAAGCTGAAAACACCAGTCATCAACGCATCTGTAGCTGTCATTTGTAGGCATC
ATTAGTACTGCACAGGTAAGAACAATCTGAAACTTTGTCTGCAGGTAGTTGCACGTCGTG
ATCAAAATAGTGTACCATGATTGATCTATTTTGTTTTGTTTATTATACCATGAAGTCTGC
AGAAATCGTTACCATGATTAATCTATTTTGTTTTGTTTATTATACCATGAAGTCTGGCAG
AAATCGTCGTGCCCTCTGTATAATATTGGCAGCAGAAGTTGTTTGGTGATCAATAAATGC
AAAAATAATAAATATCGGAAAAATGTTTGAAGTAGTGCTATGCCATATACAGTTGGTTGG
CCTCTGCTGTACTGGAGACAGATATGATAGAAATTTGCATGCCCAAGAAGACAGATGCTT
ACCATATGCCTCATTTGTCTCCTTCATCTGCTGTGTTGGCACTTCCATCTCCCCATTATG
CAAATGCAACCTTTCTGGCAAACGGAGCGTCTGAATTCATTATCATCGCTTGGAAAGCAT
TCGAGAAACTTGTGACCAGTTTGTTTCATTATATTATTTGTTTCCCGGACTTCATTTCTC
TGAAGCGCCTGATTTATTTCTGCTGAATGATGATGCGCCCGCTATCTTTTCTCAGACAAA
GTCAAAGTCTGGCCTTTCTCTATGCCATGGGCGCACTTGCAAAAGAATAGAGATCCAGCG
TCCTAGCCTTTCTCATCCAAGAAGGGACACCACATTTCCAACTTTGGTCACACGTTTCTC
TACATACCCACTATTTGCCAAATGTGCCTGTCAATGTCCCAATTTGTGTATTGATCAGTA
GTTAATTCAATAGTAGACACATTGTTCCCTCAAAATAAAACAAAATAATAGGCATTTTGT
AGTCAGAAGAGCATTTTCTTGTGATTGTGACTTGGTAAGCACAAATGAAGTGTTGTACGT
GCAAGAGATTGAAGATCAAATTTCAAAACGGAATGTCGTATATTCTGTAACAGAGGGCGT
AGCTTGTAGTTTGTCTTGCTTTGGACGTAAACGGTGCGCTGAATACCGGAGAGAAAAGAC
AAAACATTTGCCATCGTAACCATGACAAATGTTTTTTCTTCTCTGTTGTTATAAAAAAAT
TATGTAACAAAAATATAAGCAATTCTAGCAGACCCCTATCCTATTCTCTGTTGTTATAAA
AATATATATGTAAGAAAAATGTAAGCAATTCTAGCAGACCCCTATCCTAAAAAGTCATCT
TTTATTCCAAAAGGTTAAATGTTTTAGGGGATTAAAATTTCCTTCGTCTAGCATATCCCC
TAAAACTTAATCCCCCAAGAATTTCAAACACATATTCTTGTGAACAAATTCATTCGAAAC
ACAGTTAAACTATGTACTTCATTTCATAACCAAGCAAAGTACTACATTAACATCAAATCT
ACCATGCTATAACAATATATTAGGGCATCTCCAACGGCGACCCGCAAATTCCCTCTGGCA
TCCGTTCGCGGATAGGGGGACCAGTCCGCGAATACTGATGCCGGAGGCTGCCATCCAATG
CTCCCCGTGTACATCTCAACAATAATTTAAACTAACAGGATGAAATTCATGCAAACACGG
CTTTTCAAATAAATTGTAATAGATTCATGCAAACACGATGAATTTCGTATAAACATGACG
AAATTCATTACATTTTGGACATACTTCAGGTAAAAGCGGAACTTGTTTGACTCTGGAGGT
ATAATTCCTAATCTAAATGGTCGCTGACGCCCATTCCCAACCGCCCATTCCCAACCGGAT
TGCCATGAGCCCCGGGAATTGAAGCTCTGACACTTGCCTTCGACTTCTCCAACTCACTCC
CCACAGCCTTCGCCACCGCAGCTTGAGCGGCTAATCGGACGGCTATTATCAGCCCGTCAA
GCTTGGCTTCATGCAGAGGGGAAAAGTGGATTCCAGTTCTGCCTGGCGCTGGCGGTACCG
CGAGCAGTCGAGGCGGATGTCATGGGAGGAGCGATAGGACTCGAGCAGGGTCATCTGCTT
CATGACGTCCGCGTCCGGCTTGATCGCCCTGCCGTCATCGAGCTGCTGCTCCGCCTACCG
GTGCTCCTCTAGGAGCTGGATGTTGTAGGTCGGATCAGTGTGGGCCTCCCAGAACTGCTC
CTCTCGCACTATGTCCATGAAATGGGTCGAACCTCGTCAATGGTCATAGTGCAATGGACC
GGCGAGGGCGGCGTCAGCGAGGAGGGTGGCATCAGCTTGTCGTCGACTGGTCATTGGTCC
CTTCATTGGGACGTCATCTGCCTCCGCCTGCATGCCAGATGGCAACAATGGCAACCATCT
CCTTCTTCTGCTCCGGTGTAAGCCCATCACAAAGTGCTTCAGAGCGTGTTGAGGCCATGG
TGGGAATGGTGTGGAGAGGAGAAAGAGACCGGAGGAGGATGAGTGCTAGCTATGGCCGCG
GTTGGTGCTTATATAGCAAGGCGAATGGCAAAGGTGGGCGACATGCGGGCGAACGGGTGG
CTTCGAAGCATGTTTCTCGGCAATCGCGTGTCATTAATGTGGGCGGTAGAGGGAAGGATG
AGTGGTCGTGGTGACGTATGAAGGAGGGGCAGACGCGTGCACCTGGAAGCGGCACGGGTG
ACACTCTCTCCGTCGGCGCGCCTCTTCAACTTTGACACCAGTGAGAGGTTGCGTTCACTC
TGGTCGGGCATGAATTTGGCCATTGACGCTTTGGACTTGTGATCACCATTTCGAGTGGAA
AGCACACACTGACGTGGGAAGAGTTTTTTGTGGGCCAGGCTGGTCAAAAACAGACGTGCT
AGGGGCCCGGACGCCCACAAAGCCCCCTCGCTTTGTCATTGGTTTGTGGGGGAAAAGCAT
GCCGGGACCGCCGAATGGATTGATATATCCCCTCGTTGAATGGCCCCTGCGGTCCGGGCC
GTGCTGATTGGATGTGTGCGAGTGGTTTGAGGGTAGGCATTGGATATGCCCTTACCTAGA
ACATTACCACTACAACGACATTGAACTAGTTAAAACATCACTACATACTAGATAGATAAT
AAATTATACTCCTCATCGTAGGAGATCTTTATCACCCCCGTGCCGGAGATATCAGCGTCG
TCGTCGGCCACACGAAAGCCAACTTCCGCGTGAAAGTTTCCCCGTCTCCCAACCCACCTC
TCCTGCCACCGATTCATGTTGGATCGCCACCATGGAGAGTCCATAGCCCGTCTTTGCCCA
TTCCCGCTGCTTCAGACGTCCGTCATCGCCCCTGTCACCGCTGCCAACTCCATTCACCAC
TTGTCAATTTGCGTTGGTTCCGACAACTTCTCATCCCTAAGCCGCCACATATGGCTACTA
GAGCACCCGAGCTTTTCCTTGGAGATCGAATATTTGCTGGACCTTCCCCCAAGTGACCGT
GATGGGCACCATTGATCTATAGCTCTTCCAAACTCTAGGTTCTTGGCCAGCATTGCGACG
ACAACTCTTCTCAAGATCCACAACTTCCCGCGTCAGTAGAAGCACCGCGACTACATTCCT
AGACATTCTCGCGGCCGCCTCGGCCTACCATTTGTTTGACAAAAATCCTCAACATAAAAA
AATCTATCTTTATTTTTTACTGCGATATAGTAACGTATTGTGACAAAACGTGTTGTGTTT
TGTAGATGTGTTTGTTGGAAAACATAGTGGAAAACAAAAAAAATTCACCCTATGATTAAC
GAGGAGCACTATGAAGATACAATAATGGTTGGGATGAGATCATTACTGACTCCTTGTTGC
AGCGGAAGAAGAGTCGCTGTAGATCGTACTTGGAGTCCCTCAATACGTAGATGAATGATC
CAGAGGATCGCCCACGAACAGTCCCTCGAACGTTAGACCAAAAGCATGACTAATACGTCC
ATTTTGCATCACAAATCTTTATTGATATTTGTCTTATTATTGTCCATTATTCCTTGTTAT
TATGTAATTCTTATGCCTCTTCTATCTGAATATGCAAGGTACATTACGACAAGGAAAATA
TCTGAAAACTGGAATTCTGGGTCGAGAAACATAGAAAAAGGCGGAAAAATCAAGTTGCTT
CAAATGACCTGAAACTTCACGGAGAATTTTTCTTGTATATATAAGAATTATTGGGCCAAA
AATACATTGGAGAGGGGCAACCAGCTGGGCACAAGCCAACAAGGCGCCACCCGAGGCCTC
ACCCTGATGGCTTGTGGGGCCCTTGCTGGCCCTCCGACGCCCCTCTTTTCATATATGGCG
TGTTTTACCCTAGAAAAAAAATCTAGAGATAACTTTCGGGAGGAAGCAACACCTTCTCGA
GGCGGAATCCTGGGCAGCAGCCCTTTTGTTCTCCGGTAGAGCGATTATGTCGGAGGATTT
CCTCTCCGGGAGGGGGAAATCGAAGCCATCATCATTACCAACGCTTCCTCCTTCATGGGA
NNNNNAATCTTCATCAACATTTTCACCAACACCATCTCATCACCAACCCTATCTTATCTC
GTGTATTCAATCTTTGTCTCAAAAACCTTAGATTGGTACCTGTGGGTTGCTAGTTGTGTT
AATCACGTCTTATAGTTGATGCTAGTTGGATTACTTGGTGGAAAACATTATGTTCAGATC
CTTAATCATT