| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
| No map location |  |
No map location |
Predicted Genes from contig_1576875
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_17492 |
1 |
1239 bp |
MLOC_17492.1 |
Available |
Available |
LOC_Os03g14890.2, FRAME:-3, EVALUE:5e-61, 13103.m01740 protein AGAP008572-PA, putative, expressed |
| MLOC_17491 |
1 |
716 bp |
None |
Available |
Available |
LOC_Os08g43160.1, FRAME:+1, EVALUE:1e-11, 13108.m04672 protein TCP family transcription factor, putative, expressed |
CDS Structure of MLOC_17492
CDS Structure of MLOC_17491
Contig Sequence (3516 bp)
>contig_1576875 3516 assembly3_WGSMorex_rbca.fasta
GCCGCCGGGGGCAACCACATGATCCCGCAGGCCACCGCCGTGTGGATGGTCCCGCAGCCG
GCCTGCGCCCCCAACCAACCCACCCAATACTGGGCCTTCCAGTCCGCCCCAGCTCATCAA
CATCGCCGGCGAGACGAAGGGTGCTAGTTTTTCTTGCCTGTCCGGTCTCGGATGGAGAGA
GAGAGAGAGAGACGGTTTTCCCTCGATCGGAACGGTTCGGGTCGATTTTTCTTGCAAAAG
ACTGACCGGTGGGTTATATGTATCACAAAGAGCATCTATACGTAGAAATACAGAATCTGC
AAAATACGGCCTGTATCTTGTTACGTATTTGCAAAAAAATTAAAAGATGGCACCAACTTA
TGAAAACGGTCCGAATTGTGATACTCTTTTGCAATTAACTCTGCACTTTGGGACGGGCGA
GGCGAGGACGCCCGGCTCATGTCACCGGCTAATAAGTCGTGTGGTGCATGGAGTTTCATT
CATTTGAGAATGGCTCTGGTCCATGCGTGTGGGGTGGAATCATGAGGTGACAGAACCTCC
AAAAGTCTTGACATCCCTGCGCGAAAAGTCCTAAAGTGGTGGTGATCTGCACCAGGATTT
CTGTGTGATCTCACTGTGGATGGTTGATGGCACGTAAGGTAGAATATATGGGGTATCGAG
GGCCACGAGTGGCCTGATGGTTGGGAAAGAGTAACAGGCATGATCATGCAGGGTTTGATA
CTTGCAGGAAAGTCTCTCCGAAAAGTACCATGTTATTTTAAGGAAAACAGAGTATGGCTG
ATACTTTCGGGGACTGATTATATGTTCCCCACTGGAGGTGCTCTAGGATAATGCCCATTG
CTCCCCTGATCCATCACCCTTTTTTTGCCAATAAAATACGTACTATGGACAGTGTAGCTC
CCCTCGCCTCCTACCAAGCTCATCCTCCTCGTCGCTCAACGGCCCGTAGCAGCCGCTAAC
GAGATGGGTCATGAAGGCGTGGGGAGGGGGCAAAGTGATGAACTCAAACCCAGCAGCCAA
ACAATTTGGTAAAACCAGTAAGGAGTGAGCTTGCGTGGATCACTTGAACATGATTATCTA
CCAGGAACCACAAGAACAGAGAAGAATCTCCTCACCTAATTGATCCCAACGTTTGATAAT
GATAGCTATTAGTGTCGAGGAGAATTCACAAAGGAAATCATGTTTATTTATAACTAACTA
GAAGTAGTTGCACGTACCATCGCCATCCCCAAAGAAAACGCAATGGCATGTTCTAAATTC
GTGAAAGAAGAATCTATCCCTGCAATTAGGGTCATGCTTTGAAACATTTCTATTCACAAT
AGTTTAATTCTACAACTACTCCAATCATAGAAAGAGCATTGGACATCATGTGCTATAATT
TTACAGTAGGTAGCACATGCCACGTCTAGAGAATATAACATGACGTCGGGTGAACACACG
CAAGGGAATTATCCACGAGAACATCCGGTGATTCATGCATGCAGGGCTTTCAGCAAAGCC
AAATCATTGTTCTAAAAATTTATACTGCACTAATAATAAAAATGTATAGAAGAGAACCGG
GCCATTGACCAATTTCTTTTGGGGGGTCCGAAAAATGTGTACTCTTTGTTGCACCTAACC
CAAAAGAGGTTCGCCACACCTCTACCGTAAGAGGTGGCGGCGACCCAACCCTGTTCCTCA
ACCCATATTACCAAGGTTCCTAGCAACTATGGTCTCACGCATCCTTACGCTGGTATGTAA
GATTCTAACATTACTTGTCCCTGTTGCGGCGCTGTGAACTCAACAAGAAGGTACATGAAC
TTCCATGTCCTGTCAGAGTTATCTTTGAACATCTCTGAATATACCTTTCCAGCTCCATGC
GGACCTCGGATGTAAAAGTTGACCTGAAATGATACATGCATGTCGATTCAAGTGACCAAT
AACCAAGTTTGAAGGCTTGCAATGCAACTATGGAAACTCTTAGAAAATGTCATCCTAGTT
TTCCTTCCAAAGGTAGCAAAACATCATCTGAATTCTAAAAGGCATATAGAAAACTTGTAA
GGAGCCATTACACAACAAATAAAAAAGAAGCATGTTGGATCTCATCTTAGTTCCTCTCAT
TGTGTTATATTCGCAAGCTTGATCCTGGTTAAGGAAGTCACTCGCTCATTGCCATATACC
GTTAAGAAACAGTCTAAGTTCAAGTGCCCCGTTATATATTGCAGCCCCCTACAGTAAACT
TGTAAAAAAAATATTGAATTTGATACACTAATCTTGATGTACAATACAAACATAGAAGTC
ACAGCAGCAGAACAGCAGAGACAGGAATATATAGTACCTCCACATGTTCAACACCATCCT
CATCTGTCCAAACCCTGTTTGGAATACGCTGCCGAGCTGCACGGTTTCTGCTTTCATTAC
CATAACCAGTAATAGGGTACCCAATTCTCCCTGTCACCTGACAGAACATGTGAAATACAA
AATATAATGAGAGGAAACCTACAACAATATGTCAGGATGAACAGAAAAAACACTAACACC
CACAAACCTGACTATCACTCTGAACTCTTGCTAGAGCTTTCCCAAAGATCTTGTACCTGT
AGGATGGTAACAACAACACGTGTTAGAGAATCTCACTTCAGGTTGCATGCAAATACCACA
GGCATCTTCCGGGAAAAAACAATGCGACAAACCACAGATGAATATGTAGCCAAAAACAAC
GTGAACACAACCATGTGATGTAAAAAAGGGACTTGAGGCATTCAAACAGACTAAATATAT
CATTTGATGCACAAAAGAAATTCAGTAAATCCGGCGGGACTATCAACCCATACACGGCAA
CTGACAACATGCTAAACAAAAACTTAACGTCCAGGTTATAATGAGCATGAATTATATTGC
GTAAGCAGCTTCGAGGAGAAGTGCCATCAGTAAGAGTAAAAGATGCCAAGAAATGCAAAC
ACAAAACTGGTTGTAACAGCGTAATATGAAAAGTGTGTAGATTACTAATGAATGACAGCA
TGATTTTCTGCAAGTTGGAGCATCTAGAACATCAACCAAGTGATAGGTAGTGGCACACAA
TGAATAGGGGAAATAGCATACACAACCGGGTAATATATATATACCACAAGGCCTTCAGAT
TTTCAAAAATGTGTAGTAAAATTAGCAGACTTTTTCGCTAGTGTAGTATACAATATTAAC
TACAGCAAATGCCTGCAGTTCAGAGAGATGTTGCAAGTATTTTAATATAAGAAATATTAC
TACATAATTTGTAAACAAAATGGGTCAGTATTTGTTACTACCAAGGTGATGTGCATTGTG
CCTTCAAAGCTGGTACCAGCTGAGGTGGCTTGGTGATACATGAAGGGTAGGAGAGCCAAG
CCAAAAAAGAAACAGTGACATAACTTGCTCCGTCACCAACACACACAAAATCATGGGCCC
AATCATCAGTGAAATGGGCAAGGGAGAGAAGAGAATGAGATATACTCCCTCCGTCCCAAA
ATNNNNNNNTTAGATTTGTCTAGATATGAATGTATC
