Contig Data
morexGenes
Links



Map Locations of contig_1576831 (5997 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1576831

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_17477 2 4409 bp MLOC_17477.1 Available Available LOC_Os12g36890.1, FRAME:-3, EVALUE:0.0, 13112.m03784 protein CSLD4 - cellulose synthase-like family D, expressed





CDS Structure of MLOC_17477






Contig Sequence (5997 bp)

>contig_1576831 5997 assembly3_WGSMorex_rbca.fasta
GGGGCGTGCACCGCAGGGACGCGCGTTGCCGCGCCGCCCGTGAATCCAATGGAAGGCTGA
CCGGCGACGCAACCTTCGCATTGATTCCTGCGGGAAACGAGGCGATTAGAACGATGACCA
TGCACCCAGTCGCTGACTGGGCGGGCCCTGCGTTTTTTCGCGTCCCTAGCGCATTGGATT
CTGCGTGGGACCGCCGAGGCGAATTTTGGCCCGAGACGGCGAAAAACGGACTCCTCAGGA
CACGACTAGACGTTTTTCCCCGCCGGCGGAAAAAAAATAGGAGGGAGGCCTGTTTGTGGG
CGCGGCTGGAAATGCTCTAAATTTACTGAAGTTGGCAATGGCTCTGAATCACATGAAACA
CCACTAACTCAGAAACACCACTAAGTGAAAACGCCATTGATTCAACAATAACTGAACTCC
ATGTCCTCTTGAGATTTCTAGCTCAAGATGAATAACAATGTCATGACAGTACACCCCCAG
TCACAGTATACAGTTACAATAGTTAGATAGCATACATAGCTAGGACATGTCTTAATATCT
TGGTAAAGCAGCAGTTGAGCTCAGCTGCTTAGGAATCCACCATCAAACAGCAACTCGTAC
TAAAGATAACTGAACTCCATGAAGCAAGTACTCCTTCATGCGAGCTTCTTCAGATGAACC
AAGTACTCTCCTACGGGAAGCTGAAGCCGCCTATACCCGGCCTGGCACCGGCCGGCGGGC
TGATATAGACCCAGAGCAGCGACACGATCATGCAGATGAGCCCGGACCAGACGAAGACGA
TGGTCGGCACGCGGCCGCGGCGTCCCAGGAGGCCCTTGGCGAAGGGGTAGAGGTGGCACA
GCACCCAGAAGCTGAAGAAGGCGCCGCCCAGCAGCTTGCTCCATTGCGGGAACTCGCTGT
ATAGCGTCCTCGCCGTCCCCACCGCCAGCGCCACCGCGTTCAGCATCATAATGGTCACGG
GTGGCACCATCAGGAAGCTCCACCGCACCTCGTACAGCTCCGCGAACGTGTCCTCCTCGC
CGTCGTCTGCGCCGCCGGGCTTGGACGTGAGCGTGAAGGAGATGTCCACGCCGGCGATCA
CCTTGAGGAGGCCCTGCAGCACCGCCGCCGGGTGCGCGCTCGTGCCGCCGATCACCCAGA
ACTGCTCGTTGCGCCACCACTCGTGCAGCGTGATCCCGGACCATTTAATCTCCAGCAGCG
CCAGCAGGCACAGCGTGATGGTGATGATGAGCAGGAAGACGAGGAACGTGGCGCTCAGGT
GCTGGACGATGAACTTGCCCGTGAAGAGGGAGACGGCCGGGAGCACGCAGTAGACGATGA
GGAACATGGAGGTGAACGGGTACATGCCCACGTTGAAGTAGGCCACGCGCTGCAGGAGCT
TCATCCGCCGGGTGGCGAACAACGCGTTGTTGCGGGAGAAGAAGATCTCCACGGACCCCG
TCGCCCACCTGAGCACCTGGTGGAGCCGGTCGGTGAGGTTGATGGGCGCGGTGCCACGGA
AGGCGTCGCGACGGGTCACGCAGTACACCGACCGCCAGCCACGGTTGTGCATCCGGTACC
CGGTCACCACGTCCTCCGTCACCGAACCGTAGATCCACCCGATGCGCCGCCCCCACTCTG
TCTTCTCCTCGTAGAAGCACGAGATCACACTGATGGCCTCGCCGACGGTCGCGGCGTCGA
GCGGCTCGCGGGGTACGGCGAGGGCGCCGGCTGGACGGCCCTGGTGCACCCCCGGCATGT
CCTGCAGGAGCCTCCCCTGGTACTCTGCCACGGGGATCGACGACACGAACGTGGCCGAGC
TGCCGAACCGCTTCGGCATCAGCGCAGACGACTCGATGTCGCCGAGCTGGTTGTGGTCGT
CGTCCTCGATCGGCGGCAGCATAGACTCGTGCTCGCTCTCCCTGTCCGTCTTCTTCCCCA
TGGTGGGCTTCCTCCTCAGGAACAGCTTGATCTTCTTCCTCCCGAGCCAGCCGTGGTGCT
CGGTGGCGCGCGGCGGGCTGAACCCGTACAGAGCGGTGCGGCGGAAGATGCAACCCGTGC
CGACGTACATGGGGCCCTGCAGCCCGTCCATGGCGCGCATGGCGACATCGAAGAAGACGA
GGTTGTGGTTGGCGTACCGGTCGTTGGGGTCGATGCCCTCGAACCGCTGCGGGAACTGCA
CGTAGCAGACGCGGTCGCCGCCGCGGTCGAGCATGTAGCACATCCCTTCCCGGAGCGCCG
CCGAGTTGTGCACGTAGTGGTCGCAGTCGAGGTTGAGGATGAAGGGCCCGTTCGACATGA
TGGCGCTCGTCCGGACCAGCGCGTTCATGGCGCCGGCCTTCTTGTTGTGGTCGTACCCGG
GTTTCTTCTCGCGGGAAACGTACACCAGCATCGGCAGCCGGATGTCTACGCCCGTCGTGT
CGATCAGCGCGCCGGACTCCGCCGGCTCACCGCCAAGCACTGGCTCCGACGTCGGTGGCG
CAAGCATTGCCTGCGCGTTCATCAATTGGAAAAGATACATGAGCATTTCGAATCGATTTA
ACAAGCAATCAAGGATTTGTGTCAGCAGAAGCAAGATGTATGGATTCGATCAATCACCTG
AATGATGCCGGCGTGGTCGCCACGCGCGTGATCCGTCGCCCCGGTGAGCCAAGTGCCGGG
CCACTGGGAACCGTCAGACATCCATGTCGCCTTCACGGCCCCGGTCTCTGCCAGCGGAGC
TGCTCCGAGCGCGCCACCGGCAGCCACGGCCTCCTCTTGCAGGCGTCTTCTTGCTCGCAG
CTCCTCGCCGGCATTGTACGCGTCGGAGCGCCGGCGGATCGCCTCAGTCAGCGAATTGAC
CCGCACCTTGAACTCGTCGTACTCCCGCTTCACCTTCCGCCTCTCGCGGACGAAGTCCAG
ACGAACCTTGTTCTTGAGGAAATCCCGCTTCTGGCCGAAGTACGACTCCGGGCAGCGCGG
CTCGACGCCGTGCTTCCGGCAGAACGGCACCCACGTGCGCGCGAAGCTGGCGGTCTCGGC
GAGCGCCTCGAAGGTGAGGAGCGCGCCGCCGTCGTCGGAGAGGTAGCAGGCGAGCTTCTC
GACCGGGTAATCGGCGGCGAGGATGGAGAGGATGGTATTTGCGGTGACGAGCGGCGGCTC
CTTCTCCGGGTCAGCGGTGGAGACGAAAACGTCGATGCCGGGGAGGTCGGAGCGGCCCTT
GGGATTGCGGGCGGTGGGCAGCTCGAAGCGGTCGGCGAGGACGTCGAGGTCGCAGGAGCG
GTTGACGGGGCAAAGCTTGGGGAGGCTGTCGAGCAGCCATGAGAAGGCGAACCACACCTC
GCACGTCACCGACAGCGCCCACAGCCACATGGCGTCCGGGTTCGGGTGCCGGATGCGCCA
CGCCAGGAAGAACCCCAGCGCCACCAGCCGGATCGCGATCAGCATCCTGCGCGGAGCAGA
GGAAGAAGCGACAAGTCAAGGAGCCTGTATGGCGAGGGAGCAAAAATCACTTGTTTTTAC
AGGAGGAATTGGTACCTGTATGGGCTGAGGATGGCCTGAGAGACGCTGGTCTTCCTCGTC
AGGGGCCGGCGGCAGCGGGCACCGAAGTTGGGCGGCTCCTCGATGCCGACGAATCCGGTG
GTGGCCCCAGCAGTGCTGCCGCCGCCGTGGTCATTCTTGGGCCATAGGGCGTTGCCGTAC
CCATAGGTGCCCTTGGTCTCGAAGAGCCACCGGGCATGGTCGAAGTCGGCCGGCTTGCCG
CCGCCATTGCCGTTGCTGCTGGGCATGGGCATCTTGATGGAGTGCACCATGGAGAAGCGC
TTGGATATGGATGTCATGGGCATCTGGTCCCTCTCCTCCGACGAGGAGATGGCGTCGTCG
TCGTCCTCGTCGACAGAGTCGTCGGTGTCGCTGCCCGCGGAGTAGGCCTCCTTGCAGCCT
GGGCAGTTGCCGGCGGCGGCAACGCAGTCCATGTAGCACTCCTCGCAGATCATGAAGCCG
CAGTCACAGGGCGGGTGGCCGCCGCGGCCGGTGTTGAGGAATGCCGGCATGTCGCAGCCG
CGCATTTTGCAGGACATGTTCGCGGAGGCGGTCGGCCGAGCGCCGTCGGCGGAGTTGCTG
AGCACGTGCGCGCGCGTGGCGCAGTTGAGGCCGCCGGTGAAGATGGTGCCTGAGACGTAG
CTCCTCTGCGGCAGCACCTCCCCCTCCTCCTCAGCCGCGGGCGCGTCCGTCGACGCGGAC
GCCGTCGTCCTGTCCGGCGTCGGCGGGATGTGCACGGTGTATTGCACGAACTCGGCGCTC
GCATCGGCGCCATCCCTCGACGCGTACCGGCTGCCCCCGCTCCGGCGCACCGGCGAGACC
TGCAGCGTCGCAGTGGAGGAGCCGATGGAGTGCCTGGGCACGGGGCTGGTGAGCCCGGAC
CCCCTCCTCACGACCCCATCCCCGGGGCTCCCGCCGCCACCAGCCTTCCCTCGCGTCGGC
GACACGGTCACCGTCACCGGCGATCCCGCCGGCAACGACAGCCGCCGCGACATCCCTCCA
CCGAATCACCTCCGCCTCCTCCAAATCAGCTCAAAGCTCCAAACGATCAAAAGAAGCAAG
AAGCTCAGCACACGAAGCAGCAGCAAGCACTGGGGGCTCAGCAGCTCAAACCGATTCCTC
GCGCTCAAAGAAAGGGAGGAAAAGAAGGCAGCCGGTCGGAATTATAGCGAGATCTGCGAA
GGTGGGGCGGTGGAGAGGAAGGATTGAGCAATTGATTGGGGGCCTCGGGGGGCGGGAGGA
GGATCTGAGCGATGGCAGAGGTGGTCGCCGGCGGGGCGTTATTTATTCCCCTCGGTTCCG
TCTCCGGTTTCGAAAACGGCGAGCCCAACGGTCGGGTATGAGTCGGCTCTGACGTGCGAG
CGCTTCGAGTGGGGCAACGGTCGGTGGAAGCCAGCCGTGAGATGTCGGATCGGACGGCTG
AGGTTTGATTCGGCTGAGCGGGGCGAGAGCATGAGGAGGGGACGGAAAGGAGAGGGAGCC
GTTTGGCCGGGAGTGAGAACCACGTGGGGCCGGGGAGGCTGACGGGTGGGCCATAGGAGA
AGGACCTGGCACCGGATTCTTGGGGTTGAACTCGTGATTGGGTTCCCATTTCTTTTGTTT
GACCGACAGTAAAGATTGGGGTTTTTTCCTTTGTCTTGTCCAGTTTAGTTTTTTCTTTTT
GCGGAAAAGCTTAGCTTTTTTACTTTTACCTGAGACCGACGACCATAGTGAAAGTAACTT
CAAGAATAACATCAGATCCAACTTACAAAATTTGTCTACGAGACAGTTGGTTAACGAGGA
ACGAGATAAATTGAGTATTACTCATTTTATGAATAATATAACACATATTAAGATTAAATG
AATAAATGAAGCTTTGTATGGCACTACACGTATGTTATTATCCACTATGGAGATATCCCT
CATTTCCGATTTGTAGAGCTCATATCAGAAATTTCAGATTTTCATTATATTAGGCTCATT
TTAAATCTAAATGACTTAAAATGCTTGGGGTCTCACATCATATTTAATTCATAGTGATAA
GAGAAAGAAAATTAGTGGTTATGTGTGCATCTTTTTTTACATGCACCATGCAAGTCTAAT
GAAAGGGGGTGCTACATTTATTGCTTTCAGAATGGAATATGTAAAAAATATTTTATTGGT
TAGTTAAAACTAGTGTCATTCACTCACAATTCATCTTGATTAATGAAATTTCCGATTTAA
GACCTATAAACCAAAAAGGAGGGAGTAATAACATAGTCCAAAATAGCGTGTATGTTACTA
GTAAGTTATTCTCCACTATGACTAGTCTCACAGATGTGATGGGCTCCATTGGTGCATTTC
ATTCTCGTTTTCAATGTAGTATCATCATTGCATCTCCGGATGTACATGTGCATGTTGGAC
ATAGTTGACAATCAACGTGTGTTGGACCATTCATAATCCAACTTACGTAAATCTGGTCTC
CTGTATTGTAATGCCCCAAGAGTGTACCTTTCCTTATTTGGAACCTTCTCTATGTGG