morexGenes - Barley RNA-seq Database

Contig contig_1576534

Source Contig contig_1576534

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1576534 (6531 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_1576534

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_17382	4	2527 bp	MLOC_17382.1	Available	Available	LOC_Os02g13560.4, FRAME:-1, EVALUE:5e-135, 13102.m01506 protein transporter family protein, putative, expressed
MLOC_17381	5	2479 bp	MLOC_17381.4	Available	Available	LOC_Os02g35560.1, FRAME:+2, EVALUE:2e-73, 13102.m03864 protein OsFBX53 - F-box domain containing protein, expressed

CDS Structure of MLOC_17382

CDS Structure of MLOC_17381

Contig Sequence (6531 bp)

>contig_1576534 6531 assembly3_WGSMorex_rbca.fasta
AAAAAAAAAAAATATTTTTTTGTTTTTTTTTTTTGTTATGGGGGCGCCAAAAACCCCCCT
TTTTTTAGGGGGGGGGGGGGGGGGGTACGGAAGCACAGCTCCAACCCAACCAATATAGCC
ACAGTTCATCTGAGCTTTGTCAACAAGGTCATTTATTAAAGAGCAAAAATGCCTAAATTA
CTACTACTACTACTTTGACGCTATGTGGTGTGCAAAGTACCAGCATGGATTTAATATTAA
CAAGAATGAAAACTTCTTACTCTTTGGTCACATTTATGATCAAGGACAAACATATTGTAC
AAATAAAACAAAATATTTTGTTAAAAGACTTGTGCAACTCAAATATAGTAACAATTAACA
CTAGTGCATATCACTTAAGTAACTAATTGCAATCCACTATCAGGGATGAATTTAAAGAAG
GGGTCTGTAGCAAACCAGGTGAAATGAATCTGGGGTTTTCAGTGAAAAAAACAGACCTGA
GACATCCTCCCTTCCCCGTAATCTTTGCAGCACCTTCTTGGCCTCTGCCATTCGGCCCTT
GCTGACAAGCCATCTCGGAGATTCTGGCAGGTAAAATACTGTCAAGCCGAAGAAAAACAA
TGAAGGAACGGAGAGAACACCAAGCATAATTCTCCAATCAGGTGATGGCAAGAGTGACAT
CCCGAACACCATGCAGTATGACAAGAACATCCCTCCTGACCCGCTGAACTGTGGAAGCGT
GTTGAGCCGTCCCCTGATCTCCGAGGGAGCCGTCTCTGAGATGTACAAAGGCACCAGCGT
GACAGCCAAGCCGATACCGAAGCCATCGACAAGGCGTGCCAGAAGCAGTACATAGACATT
GGGTGACCATAGCATGATTAGGCCGCTGAGGAAGTAGAGAATTGAAGAGAGAATCAGCAT
AGGGCGCCGGCCAACCCAGTCTGATACCGGTCCGGAGAACGTGGTGATGATGGTTGCGCC
GATGAGCGACATGGCCACGATGAGCCCCTCCACGGTCGGATCATTTTCGAGTTGGAATTC
CTTCTTGATGTACAGGACAGCACCTGGAGACAAAAAGCGTGCTCTGTTAATCTGTGTCTC
GAGTAAAAGTAAAGGACGGCAAGTTTACAGATGAGGGATAATCAAGGAAGTGTTCAAAAT
CGAAACTTGTCTTGACAATTATTATTATCTTCGTTGGTACGGTGCTGCTTTTAGGGTCCA
AGTAAAAATAAGGCAGTTTGCTCAAGGGAAATTACTCCCGTCTTTTGTTCCAAAAAGACT
AGCAGTAGCACTGAACAGCATCTGGTCTATAAACTCTAAAGGAAGCTCCCAAAACTACTA
GAACCCCCAAATTCACCGGAGCGATCTAACAAAGTAGTAAAACAAATCTGGCTAGAGCAT
ACCAGCAATTGTGGCATTGTCCCACCCCTGCAGCAGATTGCCGATGGAAGCCGCAATCGC
GACCAGTGCGGCGCCCGACATCTTCTTCTCTCCACCGAGGATCCCCGCAGCTGCTAGCGC
GGAAACCAGCTCAAGATAAACGAACCAGCCACCACAAGCTGGGATTATTTAGATGAAAAA
TCTCGCCTACCTCTCGAGAACACCAACCAAGAAGAGGAGATGAAGATGGAGAAGCCCAAA
AAGCGGCAGTCCCCTGGTGGCTGGTGCGGTAGATCAGAACCGAGCAAAGCCGCCTCAAAT
AGGAGCCAAGAGATACCCCTCCTTCACTGCCCTGGCTGCCACCGGAAAAGAAGAAGACAA
GGCCAGCTTCCCCCGCCAGAGTCACGACAAAAGGCTGATGCCCGCTTGGAATCGGTGTAA
TTTTGTACACAGGTATTTATTTTACAGCTATATATATATCTATTTATCTCTTCTTAATAA
TAAAGTGGCTTGACGTTTTTTCAAAACAATTCCTCTGTTTATCACAATTCAACCCGCAGT
CCTCCAATTAGTGGGAAAAACATTTAGCTTTTACAAATTCACCCCTTCCCCTACGCGGCG
TCTTCTTATCCATAGACGAGAGGCGACGGCTGCACGGAGCGTCCAAGGGACGCGGGAAAT
GGCTAGAGGAGTCGCTATGCTCGCGGGAGGCTCGGCGCTGCGCTCGCGGAGGCAGGCGCG
GCTGGCTGTAAGGAGTACGCGCCACCATCAGCTGTTCGCCGCCGTTCGCGTTCGTCGGCC
ATCCGCGTTCGCTGCCCCTGTTCGTCGCAGGCGGATGGATTCCGTTGGAGCGAGCTTTTG
GTAAGGATGCGATAGCTTGCCCCTCTCCACGGATTTGTTTTTTTCCTGCGTCGTTTCTTT
TCTCTGTTAACCAGATCTCGTTCTTCTATTTTGCGGGTGTCTAACCAGATCTCGTTACGT
CGTCGATCGTTTTTCCTTGTGCTATAATTATTTTGACAACTCTTCACTACCCACACTAAT
TTAGTAGTAGTACCACTACTTCTAACGGCAGCCAGTAAAAGTCGGAAATTAATTGGGTTG
ACCTTGCCGTTCGTTTCAAATCGAAATATGACTGTCCAAAGGTGCCATGTGTTTTGGTCT
TTATTTATCTCAGCTAATAAGTACTTCTGACAGCAGCAAGTTCACTATTCAAGCATAAAA
TTAGGTTACCTCGGATCCAAATCTTTTCAAATTTATGCAGAGAGTATGCATCAAGGTTCA
CAATACTAAGGTTCACCCAGATTATCTTATCCATGTGCGTTGATCTCAATGCAGATCATC
TTGCTGTATTTTACAATCGCCGGTTAATTGGCCGCAGCTGTCATCTGGATGACAGACCTG
ATGATGATGGATAGCAGCAAAAGGAAGAGTGGCGAGGCTGCCACCATCATAGCAGATCGG
GTGTGCCCAAGCAACAACAACAAGAGGAAGAAGGCCCTTCTACTATCTTTTTGTACATTG
TTGCTTCCTGATGAAATGATGTTGGAGGTGCTACTTCGGTTCCATGTCAAATTCATTCTC
CGCTTCTGGTCCATCTACCGCGCTTGGGCTGCTCTTTTGTCCTCCAAGGATTTCTGGAGC
CTCCACATGGAGATCTCCAAGCTGGTGAGACCTTGAGACCAGCACCAAAGCTACTCACGC
TCAGGGCCGGTCCTGGCGTATGGCCGGAGAGGCGGCCGCCTAGGGTCCCGGTTTGGGAGG
GGGCCATGATCGGGGTATATGCAGACATAATTTGTTTTTTTGTCCAGCGTGCAACAACGG
CTCTTGTAGATCAATCACTCGATTCCCCAGTCCCCAGGTAACACCCTTCGTGCGACACAC
ACACATGCTTGCATGCACGCGCATGTAGCGATTGCATGTACCGATCACGTGCAATTAATT
ACTAAAGTATGCAGCTAATTACGAGCCGACGGTGTTGCGCACCTGCTTTGGGCGGCCGGC
CTGGCCGGTGGTCACTTAATCACTCACGTTTGATCATCCGCGTCATCTAGAATTTGTTTT
TTATAAATGCATATTGGTTCATCCTCAATCTATATCTACAAGATTATAATTTTCATGTAC
AAACTTCTCATTCCATGAACTCTCTTTTCATCATATTTTTAAAACAAAGCATTATGAAAA
TTCAATGTTGCCTAAGAAGCATTATTGTTGTTGATGGTGTCACTTGAATTGGTTATTATT
TCAGGTTAAAGTAATCATGTTAGTTTTATTTTGCAATATTTTTAGTCTTTCTTTCGTGGT
ATTGCATTGTGAAACTAGACGTATAGATGGAAGTTTACTTTTAATGCTATGTAAATGAAG
GTGTGTAATTTATATAGCGCACGCGCACGCATATATAGTCTTAGGACTTAGGGGCCCATG
TCGTTGAGTTTGCCCTAGGGTCTTCTGAAACATAGGGCCGGCCCTGCTCACGCTTGTCTC
CCCCACCACAGGACCGAACTCCACCACAATGTACTCATGCTCGCCGTCAGGCTCTAGAGA
TGACTTACTCACCACCGTTCACACCGCAAGCCGCAATTCCATGGGAATAGTGACGCCCTC
GCCATGCCATGGACTCACCCTTCTATATGATGATGCCGCGCCAGCTTACTATGTTTGCAA
TGCGGCTACACGGGCAATCACACGCCTGCCGCCTCACAGTACTCCACCAAAATATCGTTC
CACCGCCAGACTTGGATTTGATGCCCGGACTAGGGAGTACAAGGTGGTGAGGTTGATCAC
TGGGTCTTCTCCGACAAGGAGAGGAACAGGTGTGAAGTGTACACCCCTGGAGTTGGTTGC
TGGAGGCTGGCGGCCGGTGGAGGAGTACCTTTTAGGCTCTCCAGGTATGCAACATCTGCA
ATTATACATGCGACGACGGACAAAGTACCACCGATGTTTGCCAATGGATTACTACACTGA
TTCATCGATCCTTCCCATATCGCCACAAGGACAAGAGATACCGTCTTAACATTTTCCTTG
ACAGACGAGACCCTCAGATGTGTCCGATCACCACCGCCCTTCTGGACGTCACAAGTGCAC
CTGTGGTCATAAAAAGAGCACCTAGTTGTCATGGATGACCAGCTGTGTATGGTCCGTGAC
CTTCGCAATACAATCTCTCCTGATGCCACTTTGGAGATCTGGAAACTGCTGGATTATAGC
CCTGGTCAATGGTCACTGTATCATCGAATCCATTTGTTCGGGCACGTGGGAATATATTTA
CTTGATCCGCTCGCTGTGAGGGTTGTTGGAGTCATTGGCAGCTGCATGTCAGAAAAGAAG
ATAGTCACTGCTTCTACCAAATACAAGTTCCCCGGCCAGTTTGAGCAGAAGCTTCACACC
TATGACCCTAGGTGTCAAGCTCTAGAGACCATCCTCTCCATCACCGAGACACACACACAT
ACCAGGCCCGGTTCAACATTCAGTTTATTTGAAGAGAGCCTTGTACCTACTAATAAAATC
AAGGATAGCTTCTGTCCGTATGTCATAGAAATTGCTATTGAAGTTGTCACAAATTACCCA
CCATGTCATCCATAAGTGAGAAAAAATGATTCGTATTTCTTTTTCAAAAACCGTTGCACT
GTGATTGGTTTATTAATAAGCGAGCCGTTAAACTACAACGAACGTGGGAGTGGCGCACTT
GTTAGGGTACCATACTTCTGCACCTAAGACCAAGGTTTGCGTCCTGCATATCTCACTTTT
TGTTTATTTTTAAATCGGGCAAGTACAACATATGACTTGGCGGGAAGCACATAAAATGTA
AGTTGGTATTATTTGTGAAGCAATTGTGATCTGAAGCACCAAAAGATCAGTCTATCTCAA
GTATTTTCAATCACTGAATCTTTCAGACCAGATCAAGGAGAACTATACCTTTTATGATTC
TACATGAAAAGCACATACGGGGATGTGTCTGGTGCACCGGGTCCCCGTTGCACATTGTAA
AATGTTCGGAAAAATTCAAAAAAAATAGTGCATTAACTCAACATCAATGTATGTTGCTAC
AAAAAATAAAATCCAAATTCAAAACATTGCCCATAGTGTCGAAACTGAAGATGGGTCACT
GTTTCTACTATAGACGACGTGGACGATTAGGATCGATCACGTTTGTTGTTAATAGGTGGA
TATTGTGGCCGTACAGATTTGTTTTACCCATTGCAACGCACGGACATTTTTGCTAGTAAT
AATAAAAAAAGGCTATTGCTTCTGCCCCTTCACCTTCGGGCTAATGTTTCTATTCCATCG
TAATATGATTTTGATTATACGTTAGCACTAAAAGTTTCGCTAAAATGATCTTTCATGACT
CGCCTGGGCCTCAGCCCATCGATCGACCTCGCTGGAAGTCGGCCCGACTGAAGTGGCAGC
CCAAACAACAGAGGGAGTCAGGCAGGGGACGCAAAAATTAATGGGCTTTTCCTATTTAGC
ACTGCAGGCGCCCGTTTGTCGCCGACCGGAGCCCCGCCGTCGTGAACCAGCGCCGAAGGC
CGCCCTTGCTGGAACCGACGCCAGCACCTCTCCTCGATCCAGCTCGGATTGGCAGCGAGG
CCGGCTGGGCTGCCTTGGTCGCCCGCGTGGACCGACTTGGTTCGGCCCAGCTTCAGCCAC
GGCACGACTCCTCCGTGGCCCAGTTCTGGCCACGCCTTGACCTACCTTCCCTCCGTCGCC
CTGGGCCGAGCCCAAGGTGAGCCAGCCCGAGCCCCGGTTATTCCCTGCACCCGGCGTGTT
ATAGTTATCTGCCGCTTTGCCCTGCTTAGGCTTGTTCCACATTCGGCCCATAGTAGTTTT
TTTCTTTCGAGCCTGCGAATTTATTTATTTTCAGGAAAATGACATGTTTTCAAACGCGCG
TAGTTTTCAATCCGTGTGTCGGATCAGAGTGATTTAAATATGTAACTTGACTAGAATTTT
ATGTGGATTAATATTTTCCCACTCTCATGCATGATTAAAACGGTTAAGCTTGTTGGTTGC
ATCGTTTTGCGTGTCGTATCGTGCTAATGTCATTTTACTCGTAACTTTTGATCCGTAGCT
CCGTTGGAGATGATCTGTATATGTAAATCGAGTAGAATGACGTGTAGAATCACATGCTCC
ACTTTGTTTCGCTGTTTAACATACTTAAAATGTGATTAGGACAAATATGGA