Contig Data
morexGenes
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Map Locations of contig_1576268 (4954 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_1576268

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_17308 5 1990 bp MLOC_17308.1 Available Available LOC_Os02g52130.9, FRAME:-2, EVALUE:1e-176, 13102.m05937 protein OsFBX61 - F-box domain containing protein, expressed





CDS Structure of MLOC_17308






Contig Sequence (4954 bp)

>contig_1576268 4954 assembly3_WGSMorex_rbca.fasta
AGGCTAGTCCTTCGTGGACGTAAGGCATGATGGAATAGACAAGGTTGCTTCTTCGTGGAT
CCTTCGTGGGTTGAACCCTTCGTGGAATCTCGCGGTCGTTACCCTTTGTGGGTTGAAATC
TCCATCAACGTGGACGTANNNNNNNNNCACCTATCGGAACCACACCAAAAAACGTCGTGT
CAACCTTTGCGTTTGATTTTCCTATCCCTACCATCTATTTTGATGTGCATGTCATTACTT
TCCGCTGCTATACTCTTAGACTTGCATGTTTAGGATGTGTTTGACTTACAACAATTGCTA
AAACTTGGCCATAACTAAAATTAGAAAAAGGCTATATTTTTATTTGGTCAAGTAGTCTAA
TCACCCCTTGTAGACATACTTTGGATCCTACACCTCGTCGTCGCGTGCTCGCTTGATGCC
TCGCCTGCTCGCCCACGTCCAAGTCCGCACATCATGTCCTGCTCGCTGGACGCGCCCGCG
AGCTCCTGCTGCTCGCGCATGCGCCCTTTTTCCGCGGGAGCTTAGGATGCCGTAGGCCGT
TTGCGAGGGTCGTCCGCCGGCCCGGTGGGGAAGAATCTAAGAAAAGGAGGAGAGAGATTT
GATGCACAAAACGTTCGCGTGCAAACGCAAAGAGAGACAAAATTTGCATCTAGGATGGGT
GAGCCGGATGTTTATGTTTTTACAAATGGGGTCGCGCGTTGGACCGTCTTGTCTGTTCGT
TTGTTTCAAATCGATAGATCCGGACAATTTAGGATCTATTTGTTTGTTTCAAACGGACAT
GTCCGAATGATTTGGGGTCGTACGCTGGAGTTACCTTGACGCGGGTGCTCCATGTCGATT
ATGAGTGCAAAAGAGTAGAGTTTATCCCTTCATCCCTTGTGTCGCTCTAATCAAGAAATA
TCGTCGCATAGCCATGGCACGTTGCCACATCTTAACGACATCTTCAAACAAATCGTACTA
CAGGTTCAGAAAAACCATCTCAATGCTAGCACAGGATCGCAGCTCAGAGCATCGAATATT
TCCGGCCAGAGCCGGAGGTATTCTATCAGACTATCACCACCCAGGCCTGACCAGACCAGT
GACCATACCTCGACGCAGATACTAGTACAATAATAAGCTCGCTGCAGGCACCGTCGTCGC
TACAACCCAAGCAGAATCTAAGCTCCAAATTTGATGCTCTGCTGCGTGAGGATTGGGCTG
ATTGATCTTGCGAGCGGCGACGGTCCCCCACCCTCACCCCCACCCTTTGTGAAAAGACGG
CACCGTGATTTTGGACCCGAAATCTCGAGGAAATCCGGCTCCGGTGGTCACCGTGGTCCG
GCCAAAAAGGCAAAAGCCGAGCCGCTTTTAACTGCTGTCATCGGATCTCAACCGTGTACT
CACATTGCGTTGACATGCAAAGTATAGTAAAACTGTAAACGAGAGCGACGTGGCCCTCTC
CTCTTTCTGCGGCAGTACACTCACTCACTGCGTTTGCCGTGGCACGTCTGCTGCACGTCT
CGTCCGATAGATGGATGGATGGATGGCGACGAGGCTGCATGGACAAGCCAGTACGTCCAA
TATTGTTATGTTTGTACCGCGCCAGCCAGGCACATAAATTAAAGTACCGCCAAACTCCAG
CTAACGTCGCAGATAATGTAAGTAGCACAGTACTACTCCCTCCGAATACTACTTTTCCTC
CGTCCCAAAATAACAGTCTCAACTTTATACTAGCTCTAGTATAAAATGTATTAAGCTTAA
GACACTTGTTTTGAGACGGAGGGAGTGTTCGGAAACACTCCAGTTCCTAACTCCTCGGCG
GAGCGGACCGACCCGTAGTTTATTTTTTTCGGAGCGGGCCTTCTGCCGCTCCTCCAACGG
AGCGGAGTGGCTGGAGCGGTCCATCGTCGAACATGTATTAAGTCTTTCTAGATGTTTTAT
TAATGGATTACATATGAATGTATATAGACATATTTTAGAGTGTAAATTCATTCATGTTGC
TCCGTATGTAGACCCTTAATAAAATTTCTTAAAACAATTATATTTAGGAACGGAGAATAG
GATAGTAGAACGACGTCGACACTGATGTTGGCTTCATGCAAACAGCACCATCTTGATTTG
CTACATGTAGACATCAGGTTAAGTTTTTTTGAACTTGACACCTGATTAAGGTTACATCAC
TCACCCAGATTACTACTGGCACGCACGCACGCACGCGCACACGTGTCTGAACGACCAGCA
TAGGAACGTCAAGAACACGAACGGCCGGGGCTGTCACGGCGACGCTGGCCAGTCGAAGCC
GGCGTAGCTCTCGCTGAACCCGCCGCCGTAGAACCGCACCTCGAGGTTCTCCACGAGGCC
CGGCCCGTCGGCCCACACCGCCTCGTCGTCGTCGCTGCCGACGACCGCGTAGTACTCGTC
GTCGTCCATGAGCTCCCACGAGTAGACGTCGTCGTCGTCGTCGTCGGAGCACTCCTCCCA
GTAGCTGTTCTCGAAGCAGTCGTCGACGGCCGGGCCGAGGACGCTGAGCCCCGGGTGCCG
CTCCCGCAGCAGCGCCTCGTCGACGGCCCAGCAGCCCCGGAGGTCGACGAACTCCAGGCC
CCGGCACCGGGAGAGCACCTCCAGGATGGCCTCCGTGGTGACCAGCATGTAGCCGACCTC
CAGGTGGCGGAGCCCCGGCATGGTGCGGGCGATGGCGCGGGCCTCGTCGTGCTGCCCGCA
CGCGTTGCGCCCGGCCACGTCGATCGGGTGCATCACGCGCCGGAGCGCCGCCAGCGACCG
GCAGTGGCTGCCGAACGCCTCCAGCGCGCGCGCCCCGATCTTGGTGCAGCTGCTCACGTC
CAGGAACGTGAGGTTCGGCAGCCCCGGCGCCACCGCCTCCACCACGGCGTCGCTGATGTC
GCTCCGCGGGATCTCCAGCGTCCGCAGAGCGCGCGCGCTTGCCACCCAAACACATAAAAT
TCGTCAGTTCCAGCCTGATTGTTACCACGCAACCGACGGCGACGGCCAGCGAGTGAGTGA
GATAGATGCTTACTGGTCGCCGATGAAGGAGAAGAGCGGGTGGCAGGGCAGGCCGGAGAC
GCTGATGCGGCGGCAGGCGCCGGAGCTGCGGCGGACGAGCAGCTCGACCATGCGGACGAG
CTGGTCCGGGCGGCTCTGCCGCTGCTGGCTCCACTCCTCGATGTCGATCTCCTGCCAGCA
GTAGGGCCCGGCCACGACGCGCCCCCACGACTTGCACACCCGCGGCACCACCGTCAGCAC
CTCCTGCAGCGGCAGGTTCCGGAAGACGAGCCCCAGCGCGTCCGGCAGCAGCTCCTCCCA
GCACCTGTACTCGCTCTCCACCATTGCTCCTCGCCTCCCCTGCACCCAAACAGCTCCAAA
ATCAACGCAATTCCCCGCTCCGACCAACAAAGAACCCAAAGCCTCCGGCCATTTCCACTC
CTCCGACTGAGGTTGGCCGCCCACCTACCTTGGGGTCGGAGACCGCTCGAGGGTCGTCAG
GGGAGCGGCTGAGAGCGGCGGCGGCCTCCCCGGAGCAGAGCAGACGCGCGACACGGTGAG
CAAAACCCGAATGAGGAAACCTATCGGAGAACCGAGAGAGGAGCAAGATATAAGGAGCGC
CACCAGAAACGTTGGCAAAAGCTCGATTAGGCGCGACTAATTACCAGTGCTAACAGCCAG
TAGAGTGGCAAGTAGGGAGTCCAACCAATCAATCAGGCCATCAGGGAGTACCAGGAACGG
CACGGCACGGATCTACAGAGAAGGTCTCTTGCAGGGGCGGTGTGTACGCCAAGACGGTTG
GTGCTGCTGCCCGTCGTCCGTGTGGCCTACCGTTGCACATCGGGGTCGAAGAGAAGTCTG
GACATGTGTGTGAAACGAAGAAAACACTTGAGCCTCGGGCTTCTGATGAGGGCAGGGTAG
ATGCGTGTTCGTTTTTTTACCTAGGTGAATCTGCAAGATCAGTGGCTGGAGCGTGCTGTT
GGCATGCACATTTACCGGATTGTCGATGGCGATGGGGGGGAGAAGATGGCCCGAATTCCA
ATTTGGATCTGCATGACTGGCGAAGAGTGGCCACGGGCTAGTTATTCTTTCTCTGTGCAC
CCGTGTCTCTTAGTAATAAGATTAACAAATTCAGGGCTCGCCCGGAGACTGATTGAACCC
GATGATTCCCTGATGATGTTGCAGTTAGAAACTTTTTAATTGGCTGCGTGACGACTGAAT
TGGCTTGTATACGATACAGTGCCGACGATGTAACGTGCAACTAATCGTGCAGGTGTGGGT
TCTTTCAATGAATATAAATGCAGGAGATGTATGCATGTAGTCCTGTTGTTTCCATCAGTG
CCAATGCAGTAGCAAAGTAGCAATTGCAGTAGGTCTGTGGAAATGAATGCTTTCCCTTTG
ACAATTCAGGAATATATCTTCGCAAAAAAAAAGACAATTCAGGCATATACATATAATAAA
CCATATAAAAAAATACCGGTAAAAAAGAAGAAGGACCAATTTTTTTGTGAATTAGCAATA
CTTCATTCAATGTAAATTGTTCAAGTTATGAAGGCAGTACAATATGTTTTTGACGCGCTA
CTTGTTCGATCTTCAGAAAAAAAAAGGGTCCAATTCAACTCACAAAGAATAAAGTAAACT
GCGCATGTCATAAAGCAGTGTTTCAGAGTAGTTGGTGATGGCATAGAAAAATGTCCTTGG
TGTGCGATGCAAATGGTCTGATTTGAGTGCATCTCGAAATTCTACACGAAAGATTTGCCC
ACTTTTTGTTGTTTAAACATGTAATTATTTATTACGGGGTTTAAATACTTATTAAATAAA
TAAAAACAGCCCAGCTCCTGTATCATTCCCAACCGGGCGACCCGGAGATGACCTCAAACC
CTAGCCGTTGGCAGTTCTCTTTGCTAATGTCTTGACATGTCGGTTGTCCGTTTTATGGGT
TGGACCGAAGACCCTCCCCCCCCCCCCCCCCACC