morexGenes - Barley RNA-seq Database

Contig contig_1575917
Source Contig contig_1575917
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1575917 (6777 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1575917

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_17197	3	1738 bp	MLOC_17197.3	Available	Available	LOC_Os12g37870.1, FRAME:-1, EVALUE:0.0, 13112.m03899 protein ATP-grasp domain containing protein, expressed
CDS Structure of MLOC_17197

Contig Sequence (6777 bp)

>contig_1575917 6777 assembly3_WGSMorex_rbca.fasta
GATCGTTAAAGTCTACTCCATCAAAATGATANNNAAAGTCTACTCCATCAAAATGATACC
CACNNNCCAAAATGATACCCACGATCTCATCGAANNNAAATGATACCCACGATCTCATCG
AAAGANNNGGACAACTTCGCCTCTATCAATTAGCCACATGATTATTATTTTTACCTCAGA
CGATAGCCTTAGGTAGTGTCGTGGGGGATATACGCCAAGCTCTACTTGATCCCAACCATG
GTTCTTCAAAACAAGCCTAGGGCTCCACGGCTACTCACTAACCAGGCCATTTGAAATGCC
ACGATAACATGTCTTCGAACAGATTTACGGACTTGCAAATCAAATGCTTTTTTTTTTGCA
TAAAGATAAAGGGGTACCTTGAAACTTGTAACGAGGCCCTTGAAGACCTCGTGCAATCCG
GCCTCCGCGGATCAGAAGCCTTGTAGTGTCGTGCCTATCAACGCATGATACTCTTCCTTG
AGGGAGGAGCCCTTCAAGAACTCCTCCGAGCACGACGGCAAGGGAAAGTGGATGAGAGGG
CAGGTGAAGGGGGCGGCCGCGGCGACAAGGCAAGGGCGCTCCAAGGCAGCGAGTGCAAGT
GCGGTTACGACTGAGTGGAGAGGTAGACAAGACTGCGGGTTCAATACATAAATGGCTGAG
AACTCCTTTTACAAAATTGTCATTGGGACAGATATTTCGGGACAAAGGGAGCATGTACTT
TGCACCGCATCTCACGCTGAAAACACGTAGAATCAAGGCTTTTAAGATATCTTTTTTTTT
TACATGATTAAGACATCTTCTTTGGTGCCAAGGAATAGCTGCATTTTTTCACAAGTAGGT
ACAAAGTTTGCACCCTGAAAGCCTGAAATCACAGTGCAAACACATCACACGCCGCTCCAC
CAGGATGTTGCGGAGACAACAGACCCAAAAACGCTGCAAACCTGGAGAAGTCGGGTCGCT
TTATCTTGATCTCGTTGTGCCTCGGCCCAAAGGAATCAGAACCGCAAAGCAAGATATATA
TTATTGCGTAGTTGTGTTACAACAGTAGTTCCTTTCCCCCACAAAACCGATCTTTCTCTG
TTTGCTTCACACGAACAGTTCTTTATACTAAATGTATATGGAACAAAATGGACACAACTG
TAAACACCGGAACTATACAATGACGAATCATGCTTCAGCCATGACGTAATCAATGGCTTG
CTTGCAGATTCCAGTCATTGTGGCCTCTGGTCCATAGACCTGCAGTTAAGTGTTGAACAG
AATTAGCACGGCTGGTATGGGGATGGGAATGGCCAAACAATTTCTTTTCAATTAAAATAA
ATCCACAGCTAACAGACTCCCAGATCAAGTATGGAATGGAAGATATGAGTTGAGAAGCTG
AGGTCATTCATTTCTCAATAAAAATAGGGACTGTTCGTCCGTTTTCACCTAAAAGAGCTT
ACAAGATCATACCTCAATTGGAAGACCAAGCTCTGATCCTAGGGCTCGCATTTTGGCGAG
TCCAGTTTGGTAGTTTGGACCACCTCGCCGAACATAAATGTTCACCCTTGCAGCCTTTAA
TTTGGATTCCTGGCACCAGATTTGGAAGCAAAGTAATAAGATGGGTGAGGGTTTCAATGC
AGACAGCTGAGTGGTTGGGAAATAGAACAGCAATCGAACCAAATGGTCCAACTTACCTTC
TCTCTTAAAGCCCGAATGATGCCACTGAATGTAGCAGCGACATCAGTGAAGTTTGCGATA
CCCCCTCCAATGAGAAGAGCTCTCTTCCGGCCATCAGGATCAGCAGTGGCACACTACACA
GTTCAAAAATGATATTCAGAACAGAAAAGATGAACATAATATGCAGAGCAAAGCTATAAG
ATTCCAGGTTCCTTACATCCAAAACCACTCTAGCATAATGCAAAACCTCCTCCTCTTTGG
GAGCTCCACTGTACTCGGCATAATTTCCTAGCTCTGAAGCATATCCCAAATCTCCAACCT
GGCAATCGGATGTGTCATCCATCAAGATTAACATTAAAACCTAGCTACAGAAATATCTGG
ACGATAGTTAAGTTTACCGTGTCAGCATATATGACACTAGCACCACCACCAGCAACCATA
GTCCAAATGCGACCTTTCGGGTTAAGAACAGTGAATTTCAGTGATGCGCTTGTCTGCAAG
AATAAAAAACATGTTACTTGAACGAATTTCCATTCAATATTAAACCAAATACGACTGCAC
ATGCTACTACCTCCATTTCAAAATACATTGAACATTAGGTTTGTCGTAAGTCAAAACTTT
TTGAAGTTTAACTAAGTTCATAGAGAAAAATATCAACATCAACAATACCGAATCAAAATC
ATTAGATTCATCAAGAAATATATTTTTAACTTGTATTTATTTGGTATCACAGATGTTAAT
CTTTAAATCTATAAAGTTGGTCAAAGTTTACAAGAATTGACTTAGGACAAAAATCATATG
CAATGTATTTTGAAATGGAGGGGTAATGAAGTGGACTTAAAAAATGTAAATTAAAGAAAT
ATGATACCTTCTCATCCAGTTCATGGATATAACTTTCTGATGGGCTCAGGACTCTTCCGA
AAGGTAGAGGGAACTCAATGTTACCCCACCTGTAAATTGGAAAAAAGGTCAGAGTTATTA
TTGCAGGGATAAAATAAGCACTCAGGGTCGCTAAGCTAGACTTGAACCCTGAACCGTACT
TCTTAAAGTTCTTGAATGCAGCTGTGTCATCCAGTTCACCTCTCATGTCGAGAGGGTATG
GTTCACCATTTACCAGGGTGAATGGGTTCATCTCCATAAATGAGAAATCCAAGTCTGAGA
AAGAATTAATAGTTATAACATGATTTCAATGGCAAAGCAGCAAGTTCAATTTATATGCAT
ATATGCAAGTGCGAGCTACCTTGGAAAACAGAAAATGACCCTCTAATGAAATCGCCTATT
TTTGTGCGGACCTGAAATTAAGACATAGATTGTGAATGATGGTTAATGCAGAACAAGATA
ACTATCAGCAGCAGCCAAGAACTTCTTAAATATAAGGAACTAAAAACATTACAAATGGCA
TGATATAAGTAACAACATAGTAGAATGCACAATCTTACTTCCAAGGGAAGAGTGGCAATC
AATGGAGCACATGCATCAAGTGTCATTGGCTTCTCTGTTGGAAGAAAGATTGTCTTAACC
TTGTCCCAGTTCTCCTCAATCTCAATACCACCACACTCTGAGAAACTAATTGTGCAACCA
AGCCTGTCTGACACAATTGAGAGATAATACTCTTGATCGTGTGGCACAAATGGCTCGACT
ATGAATGTTGTAATTGGAGCCTTACATCCACCCATCTCGACCTAGACATGTAAGCATATT
CAGATGGGTTAGAAATAGTTCTCCTTATCAAGATTGATGGGAGAAGTATGCCATGACGTT
AGATGTGTAACTACCTCAACTCCTAACCGCTCCTTGACAAATTGGCGGACTTGAGCAAGA
TCTAGGTTGAGGGCTACAAGGCCACTCTTCCCACGCTTGCCAAACAGCATGTCAGGTTTA
ACAACCAACTTCATCGACGAGAGCCATGGCTCCTGGTTTGAAAGCTCCGTGAAATCCGTT
GATTGTGTCACCTTACAAGGAGCAAGTTACAAATTTCAGAAACTGAACATATAATATCAA
ACATTAAGTTATTAGTACAAAATAAACTAACACAAGACCCAAAACATTTCAATCATGAAC
TATGTAATTCAAGCCAGTTCTTTTCAACCAGTAAAATTGGCTAATGTAATGTTGAGAAAA
GGCACTACCTATAGAAAGAAAAATCATCACAGATTTTTTTGCAACTCTCTGTTTCACTCG
GAAATAAATGAACTGACTGCTCACTGATGAAGAACTGATATTTTACAGGATGACATGAAT
TCTATGATGGACACCATCAAACTAAATATAATGCTAATATTGCCGGTTCGAAGTTAAATC
GCACAAAGGTTGACAGTACAAACTTCGCCGGCAACACCTTGACATACATTCAGGTGAAGA
AATGACCACATGGACCTATTACAGGCAGAAAAAATCCCAGCTAAAGACTAATTGGTTCAC
CTACAGGCTACAGCCCTTAAAACTTCGATGAACAGACAACATATACTTGATAAAAAGATA
ACCTACTAGACTCCAACTAACATCACAACAAAACAACAGATCTAATGAGGGGTGTTACTT
TTATCGGTCAATGAAACCCTGAGGGCGACATAGAAACACGGATTGTTAGGCAACACCACT
GGTGAAACCCCACATCACGGATTTTTCCTTCTGCACAGCAAAGTCCACAGCTCATGTGCA
TGATTGTTGCAGAGTCTCCGTCTCGCACGTACATGCTCCGAGCCAATTATCCAAATACAC
TGGCATCCTCTAAGTTCTGGCGATTGCAAGTCGGAAAGCCTAATGCCCCGTGAATTCCAC
ATTTTTAGTCTCTTCCAGTGTCAAATACCCACCCAATTGGCAGTAGAAACACGTTTTATC
CGAAAATTCTAGCACGACTCCCACATGCTCCTGAGCTGAACCCCGCGCGCCGGCCCAGGG
ACGTCGAGATCCAGCGACCAGCCCGCGGGATCCACCCAATCACGAGCCGATTCGAGAAGA
GGAAGAAGCGCGCGCGCGCACGGGCGGAGGAAACAGAGAGGGGGTCATCACCTGCGCGGA
GAGGATCTGGAGGTCGATGCCTGCGAGGCGCTTGAGGTGCTCCTTGAGGAGGCGCTTGGA
GTCGTACTCCCGGATCTTCTTCCGCGCCATGGCCTCGCCGACGCTTCTCTAGGCGGAGGA
CAGGTAGGTGGACGCTGTGGTAACGGTGGATTGTAGTACTGGCGCGCCGGAGCTTGAGGC
GCGGGTCGCACCAGGACGGGGTATATATAGGCAGCACTGGTTTCACTGGCTGCTCCAGTT
TGGTGCTGGGTAGATGGGATCTGGGTCGCTGGCGGGCGGTGGTTGTGTCGTGTCGTTGCT
GTGTTTTTCAGCTTACTCCAGTTTGGAGCTAACTTGCAATGGCTCCTGGGGGCTTGGGTG
GACCCGGCGCACATACAGTGCATTGGAGCTGGCACTATTTATGCCGCTGCTTTCTTGGGA
CCATTTTATGAAAATGGACTTTCACATGGCTTTATAGATAAAACAGCATGATAAAATACA
AAATTTGCTTTCGCATCCGCTCACGGATAGAGCGACCAGTTCGTGGACACGGATACGAAA
AACGGACATCCAATGACACCCGTATATGTTCAAACACTGTTTAAACATATCAGACGAACT
TCACTCATACCGGATGGTACACATACAAGCCGGACCGGAACATTTATGTATCAGGCACAC
TTTAACTAAAACCTATTCGCACTAAGGTAAAACGACTCCACGGCCATCGTTGGTGGATCT
CCATTCCCACGACATGAATACCTTAAACTAATCTACGGTCGGCCGCGACGGATCTAACTT
ATCTTTCTCATGTCCGACAGCCCGCTCATCGGTCTCTCGTGAGCCTCGGAGGTATATGCT
TCAGCGAAAAGGCAAGAGTAGCCTTCGCTTCCCCATGTTCGACAGTTGTCGGTGCTAAAA
CCGACGGATCTCGGGTAGGGGATCCCAAGTTGTCGATGTGAGCAGGATGATAACATGAGA
AAATAGGGACACGATGTTTTATTCAGGTTCGGACCCTCTCGAGGAGGTAAAACCTACATC
CTGCTTTTGATATAGTGATCATGATGGAGTACAGAATACAATATGATCTATCTCTAGTTG
GTATGATGGAATTCTAAGCTCTTAACCTCTAAAAAATGTGCCTCTACAGACTAAACCCCG
CGGCTTATACGGGCACTAGGGTACCTAGGGTTTACACATGGTCGGTTGCAATCTAAGGAT
AAACATGCCGATCATTTAAACACACCTTGAATTATACGCCAAGTCTTCGGGGATCTTCAC
ATTGATTGCACCGGGGGCGAGGGCATACAAGACCCAGCTACGAGTTATTGGTGGGTCCCC
GACCCGACCCACGAATGGCGTGTCGACGTGGTGTGTACCCCCTAGCCCAGGACACAATTA
GTAGCCCCCGAACTAGTCTTCGAGCCAAGGACATCGGGCCTCTCTGGGACAACTTCACAA
TCCTAAGGCTTCGGCTTCGTAGACGAGTTCCACCTTTCTTGTGAGCTCCCAAATCCAAGG
ATATGCTTGGTTCCACGGTTTTTCAGGCCTTCCCTATTGCGACCATGTATTTTTACGTGA
TAGTCGACCCTAGATAGTTAGAGATATCCTTTAACAAGACCCCACCCTTCTCGGTACCAT
TTTATTTTTGACAAGGCCGAGGCATCTTTTTAGCTTGGTCGTGAAGGCTTACAGAAAGAG
ACTTCAAAGTGCGTTATATCGACTAGAGGAGGTGAATAGGCATCTTTTATAAATTCGTCA
CTGAGGAAAATCCTTGTGAGGAAAGTCCTCAGTCACGAACTGCGTGCAGCGGAATAAGTA
CTCACGCAAGTGTGCAAAACAACGATAGCATAGTCGTCAGAGTGAAATGGAACATTCAGT
TTGCACAAGTAGTGTGTTCAGGATATGCAGGTGAAGAATTTGAGGTCAGGAAATTGTGAA
ATTCTTGAGTCAAATTCTTCAAACAGTAAAAATCAAAGTATTCAAGCAGTCCTTGCTGTA
TTCTCCTTGAGCTAAGGNNNNNNNNNNNNNNNNNNNNNCTCATGGTAAGTCTTCAGGGCA
AACTAAAACCACACAAACTTGGTCACCCGACAATCCACAATTCACTGCTGGATGCTC