Contig Data
morexGenes
Links



Map Locations of contig_1575850 (4783 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1575850

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_17175 5 3231 bp MLOC_17175.2 Available Available LOC_Os07g07690.2, FRAME:-1, EVALUE:0.0, 13107.m00758 protein PHD-finger domain containing protein, expressed





CDS Structure of MLOC_17175






Contig Sequence (4783 bp)

>contig_1575850 4783 assembly3_WGSMorex_rbca.fasta
TAAAATTGTAGAAGCTGGAGTTGGAAGAAAATTACCCACCACTGCCANNNNNNNNNNGAT
ACCCCTTCGTTTCTCCCCTCTCATCCAATCAATAGATCCTTTCCACCAAAATTTTCATTT
CTGAAGCTGGAGCTAGATGAAAGCAAAACATTTTCTTTGAAAGAGTTGCAACTCCTGTAT
GAAACTGCTCCAAAGTGAATTTGGTGGAGCGGAATTGATTTTGATGGAGCAAAGCAGTCC
CAAACAGGCCCTAAAATGCACCACTTTAGAGATTCAAATGTTGGAAACACATATAAAGAG
GTGGTGTGTGCAACCGCAACGACATATTCTGGAGACAGTACAAGTTGTGGGTATGGCAGA
GAGCATAACATGCACCAGGTTCACAGGTATACGCTCTGGTAAAATAGCCAAAAACATCAA
TTCAACAAAAGTAGCCCAAATCATCATTTCACTGAAGTAATGGACACACAATTAGGCCAA
CATGTGAACATTCCAGCACCTCAAGCTTCAATGTGGCATATTCCCAGCATACAGAATTAG
CCTAAAGTGATCTTTAGTTGCCACCAAAGAAAAGAGAAAGGGTATTATGAGGGGCTAAGA
AATGTGAACAAGCTAATACAGGTTGGTTGAAGATTTTATTTTTCTATATACTGAGATACA
AGACGTACTTCAGCTTTGACTTGGCCAAATTATCAGTAAAATTGGTTTTTGGTTCAGTCA
GGTCTCAACCTAGAACCTGTAACATAACTTTATTGATTTCTTTAATGGAAACTGGCAAGA
GCTGGATGCCTTGCTCCCTTCCACTGAAAAAACTGTAACCCACTGAAGCCTGTGAAAAGT
AATGCTAAGTGTGCTAGCCATAATTAGCATAAGCAAGAAGGCAAATGTTGCCCTGGCAGA
ATGGAAAGGCACAACAAGTGATCAATTAACAAACTGGTCCAGGCACATATCAAGTAATTA
TTGCCAAAAAACAAGAACAGAAAACAATTATGTATATTTCATACCTTTCTACATCCTGGG
CTGCAGAAGTGATCAATGGAGGCACCGGGTGGGGTAGAAACGGAGTCCCTCTCAGTTCCA
GGTGTACAAATCTGGTGATCTGAAAAACAACAATGTGTAAGAAATTGCCGGAGTGCACAA
ACTTGTGTGTGTGAGCGCGTGCAACCAAGCACGTGTGTGTTGAAAGGGCTGAGCCATACA
TTTTCTTGAGCATTGCAAGCAAGAAAGCAACTCAGTGAAAGACGATGTCATTTCTTCAGC
AGAGCTGCAGAATTTGCATATACAGCTACGACAATACCAATCTCCAGAAGGCATCTGTAA
AGGCATTTAGCACAAATATATAAAAAACAGCATAAAAGCATGTGACAACAAACAAAGAGA
CATTCCAAGAAAAAAACTAAGTAAAACAAATAAATCAGCATAACGTCCTAGCAAGCAACT
CTTTTAAAAGTGGTGGGGCTCAAATCAACTGGAAGGCTTATAAGTGATAGCCCAAATGTT
CAGATAATTGTTAACCCAAATACTTGTATGCTCACCTCGATTCCTAAACAAGCCACATGA
AAAGTTGAAGTACAGCGATCGCAGCAGAGCAAGTCACCGCCATCACCACAAATACCACAA
GTATCATCATCAGGATCATCAGCAGGATCTATCTTGTAAAATCCCTTCTTTTCATGTTGT
GATTGCTTATCCCATGCATCAAGTAAGCATTGCAACAATGGAACCCTGCCATCTTCTAGG
AAGATGTTTGCATAAGGCTCATGATCTTTTGAACCAGCATGAAGTTCAAACTTAGCAGCT
GTGAGAATCTTGGAACAGCATCCACAGTAAATACCATTCCTGGTAATTCTACCATCTAAT
ATTGCCTGAGTTCCTTTTTTGTTCATGTATTTGACCTTCGCATCTTGTGAAACCACCCCC
AGATCTATCATCCACGATAAAACCGTCCTTTTCCATTTATATGGAACATAGTTACCCATG
CCTTCCATATTACGAGCACTACCACGGACAAGAAGTGCACATCCCTGATGCTTGGCATTT
ACCTTCTCTTTGTTGTTCTGATACTTGTTTATAGAACTTATACTAGCAGCGGTACCTTTT
GAGTTCCTGCTTCTGTTGTTCCCTCCCTTTTTCTCAGCAGAATATTCTTTTTTGACCTTT
CTTTTCCGCACAATTCTCTGTAGTATTGCTAGATCCTCTTTTGATATGGCATCAAAGGAA
GCATCTGCAACACCTGGTTGACCTGTATGGTTCTCATCCTGTGAACTTTTCACGTGCTCT
TGGAACACTGCATAAGCCTTTGTGATTGACCAATAGCTACTACCTTGTGGAGAAACATAC
ACAGAATCTTCATAATCTTTATCCTTCCGGGGCCTTAGATCAATTGTCCATCCATTATCT
AATAGTATACCCTTTATCTGATCCCGGAGTTTCTGCTTAAGTGCACTACGAGGTCCTCCC
CTTGGTTTCTTCATCATGACATGCTTCTTGGGAGCAGAATCAGATGTGCCCTGCAGATCA
GTGACTTCCAATTTTACTTTCTTGGATAAATTCTCTGGTGAACCTTTATGCTCAAGTAAT
CGCTTCTTGTCATTTTTGTGTTCACCAAGTTCATTTTTCTCATCTTTAAGGCTTGGTGAG
GGCTGATGATTGCCTTGTGAGGAGACCTTCAGCTGCACCTTTGAACTTTTCTGTTTCACT
GTATGGCCTGAAGAAACTCCCACTACGCTTGGATCGCTTCTCCTCAATATGACAGAGGAG
ACCAGTTTTCCTGTAACTTTCTTCCTACCATTTAAATCCCGCATTTGGGACTCAATGAGA
ACACTGCTTTTATCCTTATCCTGTTTATAGCCAGTAAAGGTCTCTTCATCCACCCTACTG
TTCCTCGATGGAATCTTGCCAGCAACAGCTTTTAAATCCACCATACAGTTCTTAGCCGCC
ACCTTCTCATCGCCACTTCCTGTGTCCATCTTACTGGTCTTCATCAAATTCTTACCATCA
CTGGTCTCCCCATCCAACTTAATGTTCTTGGGAAGAAAGTTTTCATCAGTGTTTTCGCTG
ACCATCTTATTGTTCTTCAGAAGAAGCTTTAAAACACCAGTCTTCGTCGGAATCTTGCCA
CCCCCGGCCTCCACCTTAACATTCTTTGGCAGAGTATTGCCATCACTGGTATCCCCATCA
ACATTCGACTTCTCCGGTGGAATCTTGCTATTGCTGGTTTCCCTGAGCACCTTATTGTTC
TTCGGCAGGATCTTCAAAAGACCACTTTTTCCTTGAACCCTTATAACTTCTCCTTGGACA
GACCCAGCCAAGCTACCCTTGTCAGTGTTCAGTGGCATGTGTTTCTCATGTTTCAGTGAT
CCTACTGGCGTCCTCTTGACATCCAAAATTGAGGCCTGCTCCTTGAACTTTGTCTTCATC
TCCGGTATGTGTTTCTCATGTTTCAGTGATCCTACTGGCCTCCTCTTGACATCCAAACTT
GAGGCCTGCTCCTTGAACTTTGCCTTCATCTCCTCCTTGACCTTTGAGCCAATGGTTGCC
TTCATCTCCACCCCACATTTCTCATCAACTCGTCCAGCCCTTACTTCGGGCTTCTCGAAC
CGCCATTTTGGGAACCCTGGACGCAGCATTTTCCCTACAGTTACATCCTTTGATGCACTT
CCACCGTTTCCAACAGCACCAACTTTGGCATCCTCGATTTTGCTCCTCTTGCGGTCAGGC
TGTGAGCTACTCCTGCTGTTCTTATCACCCTGAGTAGACTTAACCATGTGGACCTTGTCA
GAACTAAGAGGCACCACCTTCTCCTCTGACAGGTCATCATCTTTTTGGCTGCTGGTACTG
TTAAGTTCATCTCCCTTGTTCTTTTCTGAACCATCGCTTTGAGTAGTCTTGGCCCCAGGA
AGCTCAGAAGTAAGAAGCGCCACTTTCTCCACTGATTGATCACCGTTGCCTAAGAAGGCA
TTTGGCTCGTCAGACTTGGGCCGCGTCAAGAGGCAGTATTCGTCCGCTTCAGAATCGCTG
GACTCCAGCAGCAGCTGTCTCTGTCTCTTCCGCCCTTTCGGCGCCACCACATCCCCCGAG
CCACCATGTTGCCGGTCCGAACCCATCTAAAACCTCCTGAAACCGATCCGAGAGCTCAAA
CTTGTCGCTCGAAATCCATTGCCCAACGCTCCACCCTGGATCGAAAACCACGTCAGAAAA
TATTTCAGCACCGAAGCTATCCGCGATAAACCCTCGATCGAAATACCGCCCAAAATTGGA
AAGGGACGTTCCGGATCGGAATTCAGCGTGATGGGGCTAACCTGGATCGGAGCGGGGGGC
GGGGAGCGGAAGCGAGAGAGGGGTTGTATTGCGGCGGCGACGGATTAGGGTTTCAGGATG
GCGAGGGGAGAAGGGGTGCGGGGGGAGAAGGGGAAGACGACGAGGCGATGCGCCGGGGTT
GTCTGGCTGGCCGGTTCACCTGGTTCTCGCTCTCGCCGTCGGAAGTCCGGCTGGGTCTGC
GGATTAATATTGAGTTCAGAGAGGGTGTTCGATACTAAATTCGATTGTGTCGTTGTCTAA
CGTCGTGTTTCTTTAAAAAGTCCTACGACTTTTTTTTAATCTCAACTAAAAAGTCTCTAT
TCCCTATCCGTTTCTTTTCAGAAACTAAACAGGGTCTAAAGGTCACTAAATGATATGCAA
AAAGATCATATTACCTCCGGTAATGTACTAAAATTTATTAAATGACATGCTAAAAGTAGG
GGCACTGTTGGAAAAAATGTCAAAAAAGTCCCAAAAAGTCCCT