Map Locations of contig_1575619 (3844 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1575619

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_17111 2 898 bp AK356117 Available Available None





CDS Structure of MLOC_17111






Contig Sequence (3844 bp)

>contig_1575619 3844 assembly3_WGSMorex_rbca.fasta
AGGTCCGATCTCTCCTTATCTCTTTCCTGACTTGTACTCCAAGTATGTATGCCTATCAGG
GAGATCGGCCCCTGCATATAAACATGCAACCGACTGCCGTAGAGAGGTACGGCGCTTCCA
ACTATTCTTTCAAATATAAGTAGGCATCTTAACTAACCCTAAGGTTGCAAAATGAACAGA
TAGGGTCATAGGAAAGGATCCATGTACTACCTTGGAACTTGAAAATTCTATGCCATGTCC
TATGATAAATTCGCAAATAGCATTGATAGAATCTAAGGGGAGTGTTTCTTCTCTCAAAAC
AAGGATAGAATCATTTAGGCAAATCATACCATAATAATATAACTAACAGCAGTCTGAACT
GGTAATTACACAAACATGTATTTATGATTCCAAGCAAATTATGTGCAAGAAATGAGATTT
ATTTCAGCTATACCTTCTGCATCAGGAAGAAGCCAGCAACTATAGGACTCAAAAACTTGG
TTACACCCTTTGTTGAAGCATGAGGCCAATGTGGTGTGCCGAAAGCATCATTCACGTAAA
GGTCAGCAACTGATGCAAGCTTCTTAGCAAACTTAAGATCATTATTTACTTCCCCTTTGT
AGAATCTAACATTCTCTAGGAGTAGAACACCACCCTCTGGCAAAGCAGCAGCCAATTTCT
CAACTTCTGCACCAATGCAGTCATTGGCCATCACAACCTATAGACAGATGTAAAATGATC
TATACATATAAATGATTTTCATCTAGTTCAAAGAAAGAATAGAAGTAATTAAGAGCTTCT
ATCGTCCGATAACATACATCAACTCCAAGGAGCTCAAACAAGCGTGGAACAAGAGGCTTC
AAGCTGAACTTGGGGGTGACACCTTTTGGGCAGCCCTGAAAATTGCAACAAATGTATTAC
AACATAGGAAAAGGAGGAGCAACAAACATAGTTATTTCAGTTGCCAGTAATTTTTCACTG
TTCTTTAATCATATCAAACGACACGAGTAACATTAAATAACATTAAATTTTTCACAGATG
ATATAAAATCTATATTGGTTGGGACAGCATACTAATCCAAAGATCACAGCATAAAGTAGC
TTGTTGGCGACATAAATCAGGCAAAAGCAAACAAGATTAAGTCAGGATAGTTGTCAAATC
AGTAAACCGTCTAAGGGTAAAAATAGTTACAGGGTACAAGATCTGTTTTAGTTATCAGGA
ATAAGAGATAACAATAACATACCCTCCCATCAGATGTTCTAATACTAGTTATCATGTATG
TCAACATTAAACAAAATTCTCTATATGTCACATGTCACATGTGGAATGTAGAGGTGCAAA
CAACTTGAAAGGTCTTTGTAGCCTGGTCCTACTCAAAATCAGAACATCATACTGAACAAC
CATATGACACATGTCACATGTGGAATGTAGAGGTGCAAACAACTTGAAAGGTCTTTGTAG
CCTGGTCCTACTCAAAATCAGAACATCATAATGAACAACCACAAGTGAAGTTCACTTTTG
GAACAGATCAAACATAAGAGGAGAACGATAAATAATATCTGTAGACATGAGAAAACGAAG
CTGATGCATAAGTTTGGCAGGCACCCCTTAATTACAATGGCCTCAAGCTTGAGGTACAAG
AACTAGTTCATAAGTACAATGGGGGGTAACCGATCTAATGAAGAGGACCATATATGCATA
AAAAAGCGCTAATTACTGGCTATGTATAATTAAAGTAGAGGGGGGCATCAAGGAACCTCG
ATGCAACACCCTCATCTAATGGTAAACTCATTACAGGTAGGAACTTGCATAAATAAGAGA
GAAATAAGGGGAACTGGGCATCGACCAGTTGGCTAGTGCGTGCAGCTGTCTGCGTGCCAA
GCCCGCACCCCCGGGTGCTTCTTCTTATTTTTTTTTGCCGTAGGGGCTCCTCCCCCAGCT
GGCTTCTTTTTTTATAAGGAGAGAATTCCTTAATTGATAGTGATTAAAATTTCAATTCAC
TATTTGGCCTTGAAACCTTTTTCTTCCCTTTGATTCTAGGTGTATGGTTTTGCCCCTTGT
GCATTATGTGACCAATTTTAATTCAAAAACTGGTCCTTGGGTTAGCAAGTGACTTAAATT
ACAATTGTGGGGGCCAACATAAACCACTTTTGACTAATGTCGAATCAACAAGCATGGGCG
GGACCGTGGGACTCTGGTGCATGCCCACCAGATGGCTGGCCAGAATGACCTTGGCGCCCT
TCTTAATGAGGAACTTGATGGTGGGAACAGAGGCGCGGATGCGGGTGTCGTCGGTGATCT
GCGCATTGTCGAGCGGCACGTCAAGGTCGGCGCGCACGAACACCTTCTTCCCCTTGAGAT
CCGCGTCACCAAGGGTGCGCAAGCTCTTCTCGATCTTCATCCCTGCATTAAATACAATGC
AGCAAGCATCAACAACAGCCCGCGAGATAGGCAGCGGTAAAGCAGCAGCAGCAGCAGCAG
CGCAGAGCTAGCAGCAGAAGCAAGCGGCGGCACCGTTCCTCGCGCGCACTCCGGCGGACG
AGGACGAGCCCCAGTCACGTAATCCTAGGGGCGGAAGAGGGGGCAGGAAAGGGGGGCAGG
AGAGAGGGCCTCACCTTCCTCGTGGGGAGCCAGCCGCCGCCGCTGATGTGAGGGTAAGAT
ACGAACTAGCTACACAGAGCTTGCTAATTTCATGGCGGAACCGATCTCAGGTTTGAATTT
GGGAATGGACAGAGGAAGTCCTCCGAAGCCACCCGCACCTCTCCGTCATCTCCCTAGCCA
ACCTCGGCATCAGCCGATTCAAATTCTACCCAAAACTTACACAGAGCAACTAGTCTATTT
AACGGTACACCCGTTAATCGGGCCTTATTTGGGCTTACAAACCACTGAAAAAGGTTCTTG
GATCTCATAGATTTGGGCCTCATTTGCATACACAGAGCTTGCTAATTTCATGAAGGAACC
GATCTCAGGTTCGAATTTGGGAATTCACAGAGGAAGTCCTCCGAGCCAACCGCACCTCTG
TCCTCTTGGAGCAACTAGCTAGCGAGCGCTTCCTCGGAAACCTTCCACCAATCGCCCCCG
CGCGTCGTCACTTGACGCGTTACCAGCCATCGTCACGTGTCGCGTTTTGAGCGTTCTCTT
TGAATTTTGTCTTTTTTATTTTTTCACACGCATTTTCGTTTTTTGAGTGGTTTTTTTCTG
AATTTTTTTGGTGTTATGAATTTTCATTGGTATTTCGTAACTTTTGAACAAATTTTTTTT
CCGGAAAAAATGCGTTTTTTTATACGGATTTTTTTTGTTTTTTTACGAGAGGCACGGCCG
TGCCTTTTGAAGAAAAAAAACGCGTTTTTATTTTTTGCGAGAGGCACGGCCGTGTCTCTT
GGAAAGGAAAAAACGCGTTTTTATTTTTTTTGCGAGGGGCATGGCTTTGCTTTCACGAAA
GGCACGATTTTGCCTTCGCGAGAGTCACGCCGTTCCTTTTAAAAAGGAAAAAAACGTGTT
TTCTGTTTTTTACGAAAGGCACGGTTTTTCTGTTTTTGAAAGGAAAAAAAACGCGTTTTG
TGTTTTTTTTTGCGAGAGACATTGTTTTGCTTTCGCGAAAGGCACGGTTTTGCCTTTGCG
AGTGGCACACCCATGCCTCTCCCGAAAAGAGGAAAAAACGTGTTTTTGCTCTCTTTTTTA
CGAGAGGCACGATTTTGCTTTCGCGGGAGGCACGGTTTTGCCTTCGCAAGAGGCACGACC
CGTGCCTCTTGGAAAGGAAAAAATGCATTTTCTATTTTTTCTATCGCGTGAGGCACGGGT
TTTTCGTCCGGTTTTTTTTTTTCCAATTTTTTTTATGTAAGAAAAGGTCGTCAAAAACCA
TTAA