morexGenes - Barley RNA-seq Database

Contig contig_1575414

Source Contig contig_1575414

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1575414 (3070 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_1575414

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_17049	1	1729 bp	AK373549	Available	Available	None

CDS Structure of MLOC_17049

Contig Sequence (3070 bp)

>contig_1575414 3070 assembly3_WGSMorex_rbca.fasta
AAGCTGGTTTACAGTTTATATAATCTGACCTCCAAACATGCCCACCTGAATTATTTTTAT
AAACCAGATTATATAATCTATGTTCATAATTCAGATTATCATAATCTNNTATGGTTCCAA
ACAGGGCCTTAGTAAACATGTAAGTTTAGTTGTTGTTTTTTTGGCTCAAGCACAAAACGG
TTAGATTTTGGATCGGTTTTGATTGCCATATTTGTCATGAAGAGACCTTTAAAACAAGAT
CAATGCTGATTATATTCTAAATATACATTTCTCATTGCTTTTTAAACTCTATTCAGAACT
TAATGCACGACCAAAGAACAAAGATGTCAGTGAAAAAAGTTCTGAAGTCGAACATGCAAT
TCAAAATACATGACCCTGTTTTATTTGGACAAAAGATAAATACGCAAACAACTTTATTGG
TGGAAACAAAAGATAAATGCGCATTGATTTTACAGATGTACTAGCAACTATCCATCTCCA
TGACCAGCTCATCTCCGTCTGTTCTCTATCCAGTGTCTCATCTAGCATCGGAGCATTTGG
GTGCATGAGTTACGCCGGTGCGCTGGATACGTCCTCGATTCGTAGCAGCCCCTAGATAAC
ACTGCACACCCAAGCACCGAAATTAGCACCGAAGCCGTACCGAAGCTTCGCGTTGGGCGG
TGGGCACCAAATGCATATATATCGCGCGGCACGTGCACTCCACCTCACATAGCCAGCGTC
CAAGTGGCTAGCATAGGACACACCCAGCGGACGGCAAACACCATCGCGAGTCCTCGAGCC
GCCCACCCTCCCCGTCGCGACCAGGGGGCACGTCGCGCCCATGCACGGCAAGCATGCCCA
CAGCCCCCCACGTAGCTCACGCCACGCTTCACCAGCTACAGCATCCCGTCGTCTACATAT
GAGGCGCCATATCCCCCCCTTCCTTTCACAGACCGCGCGAGGTCGAGGAGAAAGCAGAAA
GCAAGGACCTGCAAACATTGCAAACATGGCGGCGGCGACGGCTCGGTGGCTCGTCCTGTC
CCTGCTCGTGTCCGCCTTGTGGGCATCGTCGGCGGCCGCGGCGCACGAGACGAAATGGAA
GGCCGGGGCTGCGGTGGGCGGCCAGGTCGTGGAGAAGGAGAGGCGGAGGGTGGTCGTCGA
GAGCGAGGCCGGCACGGTCACGGCCACGGACGTCGCCGACGCGGCGGGCACGGTGTACCG
GCTGCAGTTCATCACCATGGACCCCGGCGCCCTGTTCCTGCCCGTGCAGCTGCACGCCGA
CGCTGTCTTCTACGTGCACAGCGGTACGCAGCTACTAGCTAGCATCCATGAACGCTATCA
GCAAGTGAGTGCAGTGCACGTACGTGTTTTGTGCTACTGAACTCAACTCACGTCGTGATC
TTCTGGGGGCAGGGCGGGGCAAGGTGACCTACATCCAAGAAGGGGGCAGCGAGACGAGCT
CGCTGGAAGTGCAGCGAGGAGACGTGTACAACTTGGAGCAGGGCAGCATCCTGTACATCC
AGAGCTACCCCAACGCCACCAGAGAGCGCCTTCGGGTCTACGCCATTTTCACCAGCAACG
CCATCAACTGCGACGACCCATCGGTACCTACAGGCCGCTTCCATGTTCGGTGATCTAGTT
GTTCACTCATACTCCTACTTAGGTACTGACGGTGCCCCCCGATTGATATTGCAGCATCCC
AAGTCAGAAGCATACTCGAGCGTCAGCAATCTACTGAGAGGATTCGATGTGAAGATTCTT
CGACAGGGATTTGGGGTAAGTACAAAAATGTGTGTCTGAACTTGTAATAAGTATCACATG
GAGTACATGAACTGTTGTTTGTCTCGTAAGGTTTCCTCTGGAGTGGTCGAGGCGATCACA
TCGGCGAAGAGCCCACAGTCGATCATAACGTACAAGCCAGACCAGGAGAAGGAAGAGTCT
TCGAATTGGACGGAAGAAATCTTCGACGCGCTGTGGGGAGACGACTCCCCACTGAACAAG
AAGAAGAAGAAGGATAAGCACAAGAAGAAGGACAAGAAGGACGACAAGTCCAAGAGCAAG
ACTTTCAACTTCTACTCCGGCGAGCCGGACGTCAAGAACTGCTTTGGATGGAGCAAAACC
ATGACCAACAAGGACCTCCAGAACCTCAGGGGGTCCGACATTGGCATGTTCATGGTGAAC
CTGACCACGGTAACTGAGCTAGCAGATTCATCGCTCGCTGTTACGTTCAGTAGTTTTTCA
GCTCTCATGCTAACTTACAAACTGTGTAACACTGATCATTTTTGCAGGGGTCGATGATGG
GACCTCACTGGAACCCGAAGGCCACGGAGATCGCTATCGTAACACACGGGTCAGGGATCG
TGCAGGTGGTATGCCCGAGCATCCCCTCGGGCGCCGGAGGCGATCACGGCCACCACGACG
AGGGCGGTCGCGGGGGCGGCGATCACGGCCACCACGACGACGGCGGCCGCAGGAGAGGTG
ATCACGGTCACCACGATGAGGGCGGGCGCAGGAGAGGTGGTCACGGTCACCACGACGAGG
GCGGCAACGACGGCCAAGAAGGCATCGAGTGCAAGAACTCGGTGTTCGGGGTGAAGGAAG
GCGACGTGTTCGTGGTGCCGAGGTTCCACCCGATGGCGCAGCTGTCCTTCAACAACGGGT
CGTTCGTGTTCGTCGGGTTCAGCACCCACATGGGGGAGAACAACCCGCAGTTCCTGGCCG
GGGATCATTCGGTGCTGCAGGTTATCGGCAAGGAGATCGTGGCGCTGGCGCTGGGGCAGA
AGAACACGACCGCCGTGGAGAAGCTGCTGTCGGCGAAGAGCGGGTCGACCATAATGGCGT
GCATCTCGTGCGCGGAGGAGCTGGAGAGGAAGGCGGAGCAGGAGGAACATGAGGGCGGGA
AGGGGGAGCGCGAGAGGGAGCGGGAAGAGGAGGAAGAGAGGGAAAGGAAGCAGAGAGAGG
AGGACGAGCGGAAGAAGCGGGAGGAGGAAGAGAGGAAGAAGCGGGAGGAGGAGGAAAGGA
AGAAGAGAGAGGAGGAAGAGAGGGAGAGGAGAGAGGAGAAGGAAAGGAAGAAGAGAGAGG
AGGAAGAGAG