| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
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Predicted Genes from contig_1575260
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_17005 |
1 |
549 bp |
MLOC_17005.1 |
Available |
Available |
LOC_Os05g25600.1, FRAME:+3, EVALUE:2e-41, 13105.m02624 protein transposon protein, putative, unclassified, expressed |
| MLOC_17006 |
1 |
1739 bp |
MLOC_17006.1 |
Available |
Available |
LOC_Os07g02910.1, FRAME:-3, EVALUE:7e-40, 13107.m00221 protein OsFBL33 - F-box domain and LRR containing protein, expressed |
| MLOC_17093 |
5 |
1420 bp |
MLOC_17093.5 |
Available |
Available |
LOC_Os02g57330.1, FRAME:+3, EVALUE:7e-157, 13102.m06607 protein expressed protein |
CDS Structure of MLOC_17005
CDS Structure of MLOC_17006
CDS Structure of MLOC_17093
Contig Sequence (6584 bp)
>contig_1575260 6584 assembly3_WGSMorex_rbca.fasta
TAAGGTCAATTTCTCTCCATATATATATTGATGTGCGTGAATAACTCATACAGATTATTA
CTATCTTGAAAATAGAATAAGGAATTTTTTATTTTATAAATAAATTTGATGCATCTGATG
ATACGTGCATTTGCACGTGCACCATTACTAGTAATACTGTAATAGAATTAAATGTGTTTC
TCTTGATCATCAGATGGCTAGCGACAGAATTGTGTTAATCAAAGAATCGTGCTCTTTCTT
CTCTAACCCTTTAATTTAAATTGTTTATTAATAATTTAATAACACGATTATTCGTTGTGG
TCCCGTAGCTCAGCTGGTTAGCATATCCGTCTGATATGCGGAAGGTCATGGGTTCAATCC
CCATCGGGACCAAAGTTTTTAAATTTAATTGCAGTTTTTGTAAGTATGAATCGAAAGCAC
GATCTGAGCTGGGCCGGAGAGCGGCCGGGCCATCACCTGGTTTAGAAAGAGGAACTTCTA
CAAGGGAAGGTACATTATGAAACGATGGGCATTATTTTTTTTCAATGCCGAAAAATATCT
GAAAACAGTTTCACGCACACATCTTCACATTCTATCCGCAGTAGATAGCTTCGCGAAAAA
AACAACTTTTCCTTTAGCTTGTGCAAAAAAGACAAAAAAATTGTTGTCGTCAAACACTAT
CTAGAAGCACTGAAGTTTGTCTTTTTTGTGGAGGCTTTTCCACAAAACTTTGTGCCGTGC
ATACATGTTGTAAAGATGTATGCGTGAAATTTTGTTTTAATTTTTGGACATTTTAAAACA
TGTTTATAATTCATTAAAATAACGGGTTCAGATGCCCATGGGTTCAAGACGCCGCACTCT
ACAAGTGAAGAACTTTATTTGTGCTCTGCGAAAATCCGTACTTCTTGAGATGCAGCTATC
ATCGTCGACTCATAAGACAAAGAAGATGTTCCTCAGCTCCTGTGGCTATATCCTGCGTGA
TTTATCTGGCGGGTTTCAACTTTCAAGCAATACGTGATTGATGTCCCTTGCACAGAAGCT
CCTGCGCTGTTACTCAGTTTATGCCTGGCCCAAGAAGTGGGTCTGAACTTCCAGGGAATC
ACTTTCTTTAATAAAGTCGCAGAAATTATAAAAAAAATTGCGCCTGTGGCTAAGCAAGAA
AACATAACATATTTACACATGCCAACAGAAACGGAGGCTTATTTCCTCATGCCTGGTTGT
GCAGTAGCACCAGCGGCCAGTTATTCGGAGGGAAAACAAAAAGTGAATCGCGGGACGAAA
CGAAAGGCTACCTAATGGTATTTTTGCCTACTCAAAGGACCATCCTTTGAATGAAACAGG
TTCAGCTCATTCAATGTCGCCGGGAATTGCTAGTGCGAAAACTATACTCTCAAAAGGAAA
AGAGAAAGAAAAACTGAATCCACAACCACGTTTGACTCACCTCGTGAGGGCATTTTCTCC
ATCCTCATATGTTTCCAGAGAGTCCACAGTACAGCTGTACAAAGCAGAATAACAGAACGT
GTTATTGCTGAGAGCTGAACAAATTCACAAGGATCAGGCCACCACAGCTTGACCACAGGC
CATCCAACAGACAAGTGAGAAATTGCACCAAAAAGACGAGTTTTATCACTAATGATCTGT
CTCTTAGCCACATTGTTCATGGCGTGAAGCCACAGGAACACATGAACCCTGGCGGGGCTT
TTAGGAAATTTGTTACTGCAGAAATCTCAGAAGAGTGAATTCTCAAAGACAATAACATCA
TCTCTAACAGCCAATGACGGAGGCCAAGAAATTTGCACCAATCCACAAAACCATCAACTG
ATCACTAAAATATCTCCTGACAGTCAGCTTGAGCTACACTCACCTCGGACGAACAAACAA
ACTCAAGTTTATGGCACAAGCACAAATAGAAAATATAGTGCATCCACCCTAACCAAACTG
TTCAGCACTACCAGCAGGACATGAGACCGAGGTTCACTTCAGAATCTTCCAGTGCAGAAA
ACGTGAACCCAAGTCCTGACGCCATTTGGTTATATCGTTGTGGCACCAGCAACTGTACGT
GAAGCTTCATCAGATGCTTTCAAGGGCCCCCATGCTGCACCATAAGAGACAGGCTTCATA
AGATGACATGATGAGTAGAGAGGAGCACACTGCCCTCAAAATTATTTCATTTCTAGCAGA
CCAAATCAACGAAGCGATAGCAGGAAGCATCCACATCACAACGAGGTTCAATCTGGACGT
ACAATGCTGGAAGTGCGCAACAATGAAATCGTATTTTTCATTCGGGCAGGCTCGCGGGCA
AGTGCCTAGTACATGCCTGGGACTAGGTTATCCTATCCAAAACAACACAAGGATGTTTGG
GTGCGGGAGACCTCTTGGCTCACAGCAAAGCTCTCATCAATTAACTGATTTGCAAACTGC
TCTTGCCAATCTTAGGACATGATCAGCAAAGTTTCAACTAAGGCTTACCGGCTAGTAAAG
CCAACCAACGCAACATATAATAGCGCAGCCAATGAAACATAAATTCTTGAGACAGCTGCC
TAGTTAATCTGCCCAACGCCAATTCCACACAACTATTATTGTATATTTTTCTTTGGCTTC
TATCGACAGAAGAGAACATAGCATGAAAAATCACGGGTTACTCATGGCTGCCTATAATTA
CCCAGGTCTGCAGCACGACTCAACAACTGAATAGTATAACAGCACAAAGAATGAGTTCCT
ACTTCCTACATCTCTACAAATCACCCAGAAACCAGAAAAATACGAGAAGACCCACATAAA
GATATATATCTAGTTATGCAGAAATATAGAAGAAAAAAATCTACATGCTCATCGATGTTT
AGGAATCACACACCACACTAGGAACTCTTGGACTTAAAATATTCAACAATCTAGGCTACA
AGCAATAAGAATAGTCGATGGTGTGCCTCGTGTTCATGACTTAATGTGCATGTTTGAAAA
CAGTTGGTCTGTACCTCCAGTGTAGAAGCTCATGTAGGGCATGACCTTATCGATGCACCC
TCCGTGCACCTGGTCGCTTTTCCCTGATTCGAGCTCGATTTTGTACAACCCAGCCCTTGT
CTTCATGAAGATGACACCAACACCTTCCGCAAAACCAACCGCCGACACGTCCAACTTGTC
CTCGAGGACAGGAAGAGGGAGCAACGACCCGAGCTCGATGACCCTGCGTCGCGCCCATCC
CGCGGCTCCTCTGGGACCAGCCTCCATTGACCATAGGTAGAGCCTAGGCTTCAGCACAGA
CGCAAACAGCAGCATGCCATCCTCTAACCCCATGAGGTCAAGGTACGGCTGCTGCTCCTC
AAGCGGCACCTTGATCACAGATAGCTCTTTGTCACGCGTGTTGTACACCACGACACTGTC
ATCCTCCACGCAGGGAACATAGACATTGTTCCCCACAACAGCACTGTGCCCCGTGCCATT
GATTGTATGCACTTGCTCAACGGAGGTCACCTCGCTCCACTCGCGAGTAACTGACGAGTA
GACGGCGGCGTAGTTCATGTACCGGTGCCCTTCCACGTCGTGGCCCACCAAGGCCACGAG
GAAAGGGCCGCCATGACAGTCAAGGTGGTCGCACCCATCCTTGGCGCAGAGCACGGAAGC
ATTGCAGGATATTTCATCGTTCTCAAGCAGACGCCTGTCGGACAGCAAATTCGACCACAT
GATGTCGTAGCACTTGGGGTCGGCGCGGATTTCCCAGCGCTCGCCGGTGACGAGGTCGCA
GACGACGAAGTGCGCGTCGCTTCTAGGGGCGTAGAAGGAGGGCGAGGCCGTGCCGGGAGT
CGAGGGCGTGCCAGTGCTCGAGGTCGCGGGCGGCCAGCGGGGGGGAGGTCGCGGTGGGGA
GGAAGTGGGAGATCCAGTACTTCCGACGGTCGTCGTAGAGGAAGCCCAGCATGGGCGGCG
CGCCGCCGAGCAGGCGGTAGGCGGGGGCGAACTCGGGGTCCGAGACCATGCCTCGCCAGC
TCTTGCAGGCGGCGGCGGCGCGGACGAGGCTCGCGGGGTCGTCCGCCGGCACGCGCAGGA
GGATCTCGCGCATGACGTCCTCTGGCAGCTCCGGCGGCGGGTGGGGGCCGTGGCGCGGCG
GAGGCGGGCTCGTCGCCATGAGGATTGGGGATTTTTGTCGAGGGATTTGGTTTTGGGGGC
GCATTCGGTGGTGAAGTGAAGTCGAGCGAGGCACCGCCGCGGCGTCGAGCTTTCCCTTTT
ATTTATTTATTTTTCATTCTTCTTTCTGGGGAGAGAGGCGCTGCGTGGGATTGGGTTTTC
TGTGAGAAATGGGCTGGGCCGATGGCCTGTTGCATCTTCCGAATCAATTGTAGATTCCAC
TATTGTCTCAATGTCTTTGTAGATTCCACTAAATAAACCTAGATTTGCTCCAAAAAAAAC
TAAATAAACCTAGAATTCTCTAAAAAAAGGTAGAACTTCTAGAAAATCTCCAAAGGAAAG
TTCTACAAAAAAATTACTTCCTCTGTGCCAAAACATTTGTAGTTGTAGTACAAAGGGAGT
AAATGGTAAATCTTCTAAAAGAATTTCATAAAAGGTAAAAAGTGAAGATAGCCATGGATC
TTACTAAAAAAATGCGACTTGGAAGAACCTACAATCTTGTCGATCGTGTGAATATGAATA
CAAGAAGAAAATAGAGCTTAATCGATTTTGAAGTATATTTATTTTCCTGTTAACTGTTGA
GAGTTGTCGAATCAGATTTTCTTGTCCCATTTGCACTTACACAAAATCCTTTTCTTGTGG
AAAGGCCAAAGACTATATATTTAAGTAGCACACACTCTTGACTTTGTACATTCGGTTTAT
TTGGTTTAGATGGTCCATTTTATATGGGTTTTTGTTTTGTACGGTGTTGTTACTTCGGTA
AATACGATCCAATTTTGGTATATACCAAATAATTTTGGTACAGTTTGGTATATACCACAA
TAACCAAAGTTAACGCGAATTTGAAAAAGACACAATATCTTACAAATTTATGACTCAAAA
CACATTTTTATATATAAACATTATATAAGTAAAAAATGCATGCATATGAAGTTAATGGCA
GCAACTTTAGTACTACCTGGTTCACTGACCTGGTGAAGGATAGCATCACCAGAACACGGA
CGACACGGGAAGACCCTATTCCATGCAGGCCGAAATCACTGTTTTGACCTTGGGGATGAC
GTTCGTCACAGACTGAACTTGGCAGGGAAAAATTTCACGATCTGATCCTTTTAGCAACGC
CAGAGGCCGCGGTGTTGCCAATGTGCATAGAAACGTCGAACCTGTATACGTTGCTGACCT
AGCCCACTGCCAGGCCGAGCACGTGTTGCGTGATGATGTGGAAGGCAAGAAACGCCGAAC
CCGTATGCGTTTCCAGCAATGTCAGTGCCTTTGACGTTTCTCGGGTGGATTAAATGAACC
GCCTGGGGCCGCGGGTGGGACTCAGCCCACTCACAGCCCCTTCTTCTTCCTCACGCGGTA
GAAGAACTGCCCCTCGCCCCTCTCTCCTTCTTCACCAAATCCAACCCTGATCTTTCATTT
TTACCATCGAAAGCAGTAGATCGAACCGTCCCCAAGTTGCTTGAGGTATTCTCCTTTTAT
TCCTCCAATTATTTTCAGTCAAGATTGATTATTGTAGATGCATTTTTTAGTCAAGATTAG
TGTAGATCCATTTTTTTGAGTCAAGATTTATGTTGAAGAATATACTACTTGTGTTAAAAG
TAGTTGCTTATGATTTGTTTGTAATGTAGTATAGGATCTAGATATAGAAAAAAATGTATT
ATGTTGAATCCTAATATTATTTATTCGTAAATTTATTATGTAGGATGTTTGAGACGGGTA
AATATCCAGGCCTTGATGATTTTTATGAGCAGGAGCATCGTGATGTGCTAGTGGAAAGAG
GGAAGGTAATTATGCATCTACGTTGTTTGGTTTTCATATTGTGACAAGTTGAGAGAAGTT
TCAAAATTGTGTTTTTTTAGGTTCCACCAGTTCTTCAGTTGAGGGGGCACAACCCGCGTG
AATCTCTTTTATATGACCGTCGCTACGAGCCTTATTACAGAAGAATGGATCTTCTCCAGT
TTGTGCTCAACTTTAAAGGCACACCACCATGGCTGAACTCGACGGTCATTACCGCCCTTA
CGAACCGTTGGAGGTCGGAGACGCGCTCTTTTCACCTTGCTTTTGGTGAGATGACCATCA
CTTTGGAGGATATTGCGATGATCTCCAAGCTACCGATCGAGGGCAGGGCTCTAACCGGGA
AGGTGAAGTCTGAGGGATGGCAACAACGTGTTGCAGGTTTGGTTGGTGTTGAACCACCAC
CGTGGATTCATGAAGCCAAGAAAGATCCTAGCCCATCCGGGGTGTTATTTTCATGGCTGC
AACAACATTTTTATGAGTCCCCAGATAATGCTAGTCCGGCTGTCGTGGAGATGCACGCCA
GAGCTTACTTATGGAATCATTTGACCCAAGTGATATCCAAACTTATCTTCAACCCAACTC
ATCAACAACTTCANNNNNNGGTTGGATCCTCGGCTATATGTTTCTGGTATTTATAACCAA
TGAATTCCGAGGTTAGCTGACGGTGTGTCTTCCGTGCTTCTACG
