Map Locations of contig_1575249 (4054 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1575249

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_17000 1 1050 bp AK370061 Available Available None





CDS Structure of MLOC_17000






Contig Sequence (4054 bp)

>contig_1575249 4054 assembly3_WGSMorex_rbca.fasta
TATGGGCTCACTAGGGACAGTGTGTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCAATACAATTCTAGCATGGATAATGGACGATTATTATGAACAAGGAAATATAATACTAA
CTAATTTATTNNNNCCTCTAGGGCATATTTCCAATACCCTACTCGTATTTCATGCCATAA
CATGTTGGCAATGTTGTCCTGTAGCCGTAAGAATGTGTTTCATGTCATCACATGATTGTA
TTGACGCCATAGATGGTACTCATATCACTACTAAAGTGCCTAGGGCACCTGTTTTTTTTT
GGAAAAGGATGACTGGAGCTCTCTGCCTCTCTTAAATCAGTGCATGCAGCCATATTATTA
AATTATTTCACGAACAAAGTCTTAGATCCATAATTTGCTCATGATTAGAGCATAAACTAA
GTGCATAAATAAATAAAAGCTGCCACATCCAGCGAAACCAAAATTAGGCTACAATATTAT
AATCTACATTCATTTTATCAAATTATCTTTGGTTAGTACAACTCCCTTGTGTACAAACCA
CATGAAATTTTTAATTCTAAGTGGGACTTCAGTCTTCCAAATATGTCATGATCTCGATAG
AGGCCCATAGTTAATAAGATCCACGTACATCAACTTCACTAAAAAATACCATTCATAGCT
AATTTCCAATTAATATTATCTGACTTGTCACAGAGTTGAATATCCATCAATCGTCTCACC
AAATGCAACCAGAATTCTAGCGCTCTCCCACTAGAGATCTCCTGAATTGGATATTAAGAG
GTACCGACTGAAATATTGTAGCAATGTAATCGTCCTTACATTGTGCAATATTATATAACG
TAAGATATTGTAGAGCTAGAGGCGTTTCCCCAAGCCATGTGTCCTCCCAGAATCTGGTCG
TGGTACCATTGTCAACTAAAAACTTCACCCACTCGAAGAAGGTTACCTTCGTCTTCATTA
GCCCCTTCCAAAAGGGTGAGTCATTAGGTCTAGTCGCAACCTGGGCAAAAGTCTTTGATT
GTAACTACTTGTTCCTCAAGATTTGTACCCACACCCCGTCTGTCTCAGTAGATAACGTGT
ATAGCCATTTGCTAAGCAGGATCTATTATTTACTTATAAATTCTCAATGCCTAGACCCCT
TTGGTCTTTGGGTCTGCAAATAATATCCCACCTTGCCAATCTGTATTTCTTCTTAGCCTC
ATCACATTGCGAGAATAAACAAGATTGATAAAAGTATAGTCTTTTTCGTACATCTACCGG
TACTTCAAAGAAAGATAGAAGAAACATTGGCAGGCTTGACAAAACCGAGTTTATCAACAC
AAGTCGGCCTCCATAAGACATAAGCTTGCTCTTCCAGCAACTTAGTCTTTTTTCGAATCT
ATCTTCAATGCATTTCCATTCCCTATTTGTCAATCTTCTATAATGAATGGGAATCCCTAG
GTAACTAAACAACAATGATCCCGTTTCACATCCGAATAGTTTCATGTAAGCATCTCGTTC
CTATTTTGCTCTCCCAAAATAAAACAATTCGCTTTTGTCAAAATTTATTTTTAGTCCAGA
AAATTGTTCAAATAGGCAAAGCACAAGCTTCATATTCCTAGCTTTTGCGACATCGTTTTC
CATGAATTTGATTGTGTCATCCGCGTATTGTAGTATGGACACTCCCCCCTCTACAAGGTG
TGGGCCAAGTCCTCCTACTTGACTATTCTCTTTAACCCGGCCAATAAATACTGCCAACAT
ATCCGCTACTATGTTGAACAACACTAGAGACATGGAATCTCTCTGTCTCAATCCCTTATG
TGTTTAAAAATAATGACCTATGTCATCATTAACTTTAACCCCAACACTACCTACGGCACC
TGCTGCAACATACAAGTGTAGAAAGCACTACACAAGTCAAAATGTGATGGTTGCTGTTGA
CTTTGATCTAAAGTTTAGCTGTGTGGTGGCTCGCTGGGAAGGGTCGGCTCCTGATGCAAA
CATTCTATTTCCTAATGCATATGATGTGCTCGCCTCTTCTCACTACACACAACACTATTG
GTGTCCTTACTACACACTACAGTATCGAAGATCACACCAAATGTCATGTTTTGCACATTC
ACAGTCTTAAATGTGTCACTCTTCTCACTATACACAACACTACGCACTGCAGTATGGAAC
ATCACACCAAATGTCATGTTTTGCACGTTCACAGCCTTAAACCCGAACTGCATGGCAACC
AAATGTGAGGCATGCAAGTGCTGAGTGGTGCAATGCAAAGTAGGAGTACCAAACATCACA
CCAAATGTCATGCTTTGCACATTCACAGCCTTAAACCCGACCCGAACTGCATGGCAACCA
AATGTGAGGCATGCAAGTGACCAGTGGTGCCATGCAAAGTACCAAACATCACATCAAATG
TCATGTTTTGCACATTCATAGCCTTAAACCCGAACTGCGTGGCAACCAAATGTGAGGCAT
GCAAGTGCTTAGTGGTGCAATGCAAAGTACCAAACATCACACCAAATGTCATGTTTTGCA
CATTCACAGCCTTAAACCCGAACTGCATGGCAACCAAATGTGAGGCATGCAAGTGCTTAG
TGGTGCAATGCAAAGTACCAACCCAAACTGCATGGCAACCAAATGTGAGGCATGCAAGTG
CTTAGTGGTGCAATGCAAAGTACCAAACGATGTGCACCACATGATTTTTGCCCTGCATTA
GCTCAGCCGGTCCCAAATTGGCCACAAATGCAAGTAGCCAAAAATCAATGTAACTACTAA
ACAGGCCCCTGGTGGGTGAAGTATCACAAGGTCCGGCTATGAGCAAAACGTGCCTCATTG
CCCAAGCCTCCAAACTCAGGAAGAAAACGCAAGGTGTAAGATCAAACGGTACACGGATAC
GATCATCGAAATTTTCTGCCATTTACACTACCATCAACACTCTTCGAAAGGAGCGGCAAA
TACAATGAGTGGTAATGTTTACGTAATGAAAATACGACGAGTGGCACCACAGACAAGAGA
TCTTGAAATTAAGTCTAGCACTGCGGCTCTGAGGTCTGAGCCAAGTACAAATTGAATGGA
GTTTCATTTCACAATACAAGATTTTGCAACGAGCTTGGATGAACAGCATATTGTTATAGT
TACACATCGACTGGGTGATTATTCAACAAAAATCACTAGCAAGATTACAAGCTAACATGT
TCTTCAGCTGGAGTTGTTTCCCTTATAACTGTAAAAAATTAAACTTGCTCATGCCAAAAA
CTAATTCCGAAGAAATATGTATAATGTATCTATGTGTGCCATGGGGGTTCTTACTCACAA
AGTACAGGTTCTTATTTTTTTTTCCTTTAGAAGGGACGTTAACCCTGTCGTGGACGAGAT
ACGAGCCACCTGCATCCGATACCCCATTGCCACCCGGAAAGGGGTACTACTATCCAGGCT
ATGATCCCAGGTGGGTAGTTTGCACACAAAGCTCGGTTGCAATCTTCAATTTACTTAGGG
GCTGCTATGGAGGCCAATTCTGGTTTGTGAAGGCCTTGATACACTCCATCGTCGATCGGA
AGCTGCTGGACATGCCTTTCCCCAGCTTGGGCAGATCAACTCCTCCTGAAACTTGAGGTT
TCTCCTGACATCTTAAAAGCTTCTGCCGAGATTCTTTCCTCATAGCTGCGGCGTTGCTCA
CATAATTGATGGCATCCCATAGCATACCTCTTAGCAAGGTCAAGGTATAAAACCTTGCTG
ATTCGAATGGGACATTGTTTGCAAAACCTACAAATCGGAAACAAGCATGTTGTTCAAAGT
GTCATATTCTAGTGTTAAAGAGTAGCAACTGGGTGCATAAGCCTGTGGCAGACAAGCATT
CAAGTCGGATACAATCCCATACACCAACACGGATAAAGGCATCATTAAAGTATATCCATT
TCTCAGGAAAAGAAAAGTATATCCAACACTTCTCAACACCAAGGAGCGGTTGGTTATGTT
CTACTCCCTCCGTTCCAAAATANAAGACCTTTTAGAGATTTCACTAGAAGNNNNNNNACG
GAGCAAAATGAGTGAATCTATAGTCTAAAATATG