morexGenes - Barley RNA-seq Database

Contig contig_1575189

Source Contig contig_1575189

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1575189 (1490 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_1575189

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_16990	1	1120 bp	MLOC_16990.1	Available	Available	LOC_Os03g44540.1, FRAME:+2, EVALUE:8e-14, 13103.m04794 protein nuclear transcription factor Y subunit, putative, expressed

CDS Structure of MLOC_16990

Contig Sequence (1490 bp)

>contig_1575189 1490 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGGGGGGGGGGGTTGGCAACAAGCTGTTCTGTTTAATCTTGTAGGCATATCTT
AGTTTATCATCCAAAAAAAATTAGAAGGGCACGGATTAGATAAGCCCAAGATTAGGAAAG
AAAATATCAATGAGAATATTAAAGGCTGTGTAATATATTTTGAAGTGTGAAGACTCCGTT
TTCTCTAATGAAAAATGGGGGTCCCCTTTGATCGAAAATAATAATATTTAGAAGACGTAG
CAATCGGGCCTCTGATATTTTTGTAAGAACTAAGATAAGCTTTTGCTTGATGAACATGGT
ATTAGTTCACAGCTGGGCTGGATGTTATGCTCCCGTGTTTGTTCGCACAATCATTAGCCC
TATTTTTATGTTTATTATGCACACAAAAGCATATCCCTATCTGTACGTGATAAGCACATG
TGGCTGTGCTCTGTTATGCAGAAGACCCGGTGTGAGCCCATCATATGCTTCTATAGTTCT
ACCACCGAGATGCGTCGATATGAGTCAATAAACCCGCTGTTTATCATAATAAGATGTGAT
AAGGCACATGTGTTTCTTTTACAGTTATGTGATAACGCACATGTTTGATGGTTAGAAGCC
AACAAACTCTTCGGTTTGACCTTTTGAACCATGATGAAATTGGGTTTTGCCTTAACCATA
TACTAATCAGCTACACGGTAGGTCTTGATGGAATCTGATACATCTATTTACTTCTAAGAT
TCCATGAGTAACATACACGTCTGTCCAACCACATGGAGCTCACTTGTATAATAATAAAGC
TTACATCTCCATTTCGATAATACTAATGCAGATAAGGAAGCATCAGCGTAGTATTAAAAA
AAGGAAGCATCAGCATCTAGCAGTTTTAAACAATGATCTAGGGTACATAGGATAGGACAC
TTTTGTAGTTGAGGTTTTGAGAAACTGTGATGTGATGCTCAGGGAATTTGGAGTCGGGAG
GCAACAAAGGGGAGAAGGCCTTGGAGCACTCGGCCACCATCGCACTGCAGTCGCCGCTCC
CGGAATACAACAGTCGTTTCGAGTTTGGCCCGGGTCCTTCCATGGTATAGTTTTCCCTCA
GTTTTTTTTCCTTACATTGAACGAAACATTACTGTTATTATGTTGACGAAACGGCTGGAA
TGTGTCGAAATTTTCAGCTGAAAATTTGTTTTTGGATGCCTGTAGTTTTCAGTTGCTAAC
TTTTGCCACATGTGTTTCAGATGTCTTCTGGTTATCCTTCCGCTGAGCAGTGTTATGGCC
TACTTACCACTTACGCAATGAAATCGACGGTAAGCTTTAGTGTGTATTGTGCGCTGTATT
TTGAAATTGCTGCTTGATTGATTCCACAGTACAAAAACAATTTGGAACGTTGCCATTGGA
AGCTCATTCAGCGTTCTCCCAAGAATGGAGCTAGCATACTACTCCCTCCGTTTCTAAATA
TAAGACCTTGTAGAGATTTCACTATAGACTACATACGGAACAAAATGAGT