morexGenes - Barley RNA-seq Database

Contig contig_1575131
Source Contig contig_1575131
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1575131 (5942 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1575131

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_16979	3	1969 bp	MLOC_16979.3	Available	Available	None
MLOC_16980	2	3560 bp	AK250120.1	Available	Available	None
CDS Structure of MLOC_16979

CDS Structure of MLOC_16980

Contig Sequence (5942 bp)

>contig_1575131 5942 assembly3_WGSMorex_rbca.fasta
TCATCTATTTTTCTGCTCCTTTCACCCCCTAAACAAACTCATACTATACCAGACAAAAGA
ACCCCCTGGGTGGTTTGTCTCCACTTTGTTGCTGATGTGGCAGTGGTCAACGGTGGTTTT
GACCTACAGGTGTGCCTCCCTTGTCTGGTTGGCTGGGGCACGGTTGGCAGGGGCATGTCT
ACGACGACCAAATCTTGAGCACGAACGGGACATAAGGTAGGGGAAGCAGAGCAGCGCACC
GCACCAATGGTGGGAGGCTCTTCCTACGGCCGCGACCATGCCCAGCTGCGCCTGCACCCT
GCCGCACCAATGCTCATGAGCGCACGCTTGGCAAGGGACAGCAGCAGCGCCGCGTCATTC
ATGGACGGAGGACGGCTGTGGGCGCACAAGGTCGATGCGGACACCACGGCACGCAAAGCT
TTGCTTCAAGGACGGTCGTGGTCTCGCGCGCTTCAGGGGAGAACCATGGAGCTCGATAGG
TAGGGGATAAGGGGGGTTCACCGGAGGAAGAGATCGAGGCGGCGGCGGTCAATGCCGGAG
TAGGGGAAGAAGACGTGGGCAACGACGATTCACGGCGGTCCCAATAAATTCCTTTAGCAG
GAATGTATAGGCGTATAGCAGCAAGGCAATGCTCTAGGACAATGCTTCGAAGTGAGGAGG
AGGTGTTGTCCGCCCTGGCGAAGAACTACAGCGGGCGTCAGATCTCGGCCATGCCTGGAG
AGGTCCTAGGCACACGCAGCTCCAAATGGACGGGAGCTATAGGGGAACACACCTGTGCTT
GGGAATCAGAGGAGGGGAAGCAGGGGTCGCCGGAGGAAGAGATCGAGGCGGTAGATGTCA
ATACCGCAGTCGTGGAAGAAGACATGGTGATGGTGATTCTCGGCGAGCGAGACAAGTTCC
TTTGCTAGCAGTGTATAGTGGAGCGAGGTGTAGCTCTTTAGACAAAGTAGCAAGCGGAGG
AGGAGGTGCTGGCCGCGCGAGCGACGAACGACAGTGCCATCGGCATGAACTGAGCGCCGG
CTACGCTCTTCACCTAACGAGGGCACAAACCTGACGAGGGGGGCGCACCCGCTGGTCAAA
TACCGCTTTTGACTTTGTCCACGTCAGCACTCAGTGGGGGCAAAACCACCCAAGGACGGG
TTCTGACAAGTATGGAATTGTTGAGGGGGTTAAGGGAGCTGAAATAAAGATCAGGGTGTT
ATGTGAACCACCAAGTTTGTTCAGGGTAGTAAAATGAACTTTTTTCTTTCCTGATCTACA
AGTGACGGACCAATAGCACTCCGGATTTCAACCTTGACATGCTGCAACAGTAACCTATTG
GTTTCAACGTAATATTGATGGATTATCTTAGGCTTCCAAATTACATGATAACATCGTTAG
AGGATACTAATAGTCTGCTAGGCTTTGGTTCCTGTGTTTATGAGGTTTAATCATTGTTTT
GGGGAATACAAACATGGTTGATTCTCCCGTACTTCAATGCTTTATCTATGCTGATATTTA
TTAGCTCTGGTCGGTTTGACAAAAATGAAATTTTAAGGTGCTACACATTAGTGTGACAAA
CTCCAAATTAAGGAAGCAGCAGTTACGGGGCAACACATCATTGATCAGTTTTACATACTT
CCCATGTCTCCTGATACCAAGATACCTTTCTTCTCTGTCAAAAAAGAGAATTATTTAAAT
GCATTGATCAGTTTTACATGAGAAAAAGAGAGATACTTGAATGCTCTCATGTAGTATGTC
GCAAGAGGTTCTACATTTCTCCTCATTTACGTCCCCAATTTACTGATGCGCTTTCCTTTC
AACAGAGGGTGCAGGGTTCACCAACCATTCGCTCACCTGCAACTCCGGGAAGTAATCCAT
TTGCAGCAACTCCTGGGCGTAACCCGTTCACATCAACTCCTGGAGGTCACCCATTTGCAA
CAACTCCGGGAGGTCACCCGATTGCAGCAACTCCTGGAAGTCACCCGATTGCAGCAACTC
CGGGAAACATTTCATTTGCAGTCAAGCCTCCCCACATGCGCTGACAGCGTAAATGCCTGC
ATGCAATTTCCTTCTGCTGGGAGTTTGTCATGCTCTGGTTTTATCCATACGTAACCAATT
GCATTTTGCGAAGTTCTTGACGCTAGATTCTAGTGCACAGTAGGGATGCAAAAAGTTAGT
ACATAACCACCTACTTTTGTTCATAAGCCGGGGCCCATCTTTAGTCTCTTATTTTGTTAC
TAGTCCTTTTGTGCATCTTGTCGAAAGAGAAGAGAAGGTGATAGAAGAGGTCCCACCTAA
CCAAATTCAAGAGAAGGTTTGACAGCAACATGGAAATGTCAGTCTGGCTTCAGCATTAGC
TTGTTTCACTTGTGAACCTTCCAGCTGGAATAAGGCAGGAGCTATTTTGTTTGTCCCCAT
CATGCTTGTATGAAACATGATGTAACAAATCAGCTTATTGTCAGCGAGGCCGCAAGCATA
TACAGTATTAATCAGAAACGACCATTCTTGACACCTCTTGGCTGCATTGGCCGATCTGGT
GGTTACATGAGCCATTATTTTGGCTGTTATGCGTGAATGAATCGCTGTCATCGTACGACG
GAAACTCGAAAAGGCTCTGAGGCAAAGTATAACGACAGTTGGACGAATTTCCTGAAACCG
TTTTACTTCTATTATTAGATTTAGCAAGCGTGATGTAGACATGATCACCAGGTAGAAGAG
TGGAGTACATTTGCCGTACAATCTGACCTAGCTAGACAACCTCAAGCCTGAAACAAAATC
TATGAAGGTTGGACAGCCTTCTCCAGCACACTGCAGTTCCTTGAGGTTGAGGTGGATCAT
TTGTCACTGCAGGTCGCAAAGCCAAGTGAAATGAAGTGAGATGAGCTCTTGAGCCACACA
AGATGGCCGGGTGAGAACTTTGATGACAGGTTATCAGACGTACCTTTTCTTCTTCTCGGA
GGCGAGTTTCCGTCCCTTGCCGGCTATGACGTCGTCCATGCTCTGACCGTAGCGCCGGTA
CCGACCGCCGGAGGCGACGAAACCCGGGCACGGCCGGTAGGCCTTGATCGGCCACCACCC
GAACAAGGGGACGGCGGCTATGCCGCCCATGATCCGTCCTTCGCCGTTGCAGCCCCTCTC
TGGTTCCTCACGGCCGCACCCCTTGCAACCCCTGAAGTACAGTTGGAAGCACATTATGTA
TGTTTCAAACCGGAAGCACGCCAAATATAAATCCAAATGAAATTTAACAAACTTTCTTCA
AGTAAGCAGTATCTTGTCATCTTAGTTTAAATAAAATTTGCAGCAGCAGATTTTCATAGA
GGTTCAGGATCCTCGAATGGTTCATTTTAGCATAAATTGACAACAAATAGTCCCAGTCAA
TAAACGTAACTGTCACAGTGGCAAAAGTAAATTGAAAATGTTAGGAAAAAGAGGTTCCAC
CGAGACTTGAACTCGGGTTACTGGATTCAGAGTCCAATGTCCTAACCACTAGACCATGGA
ACCATTTGTTGGTTCGGGCTTGAAAATACTGTTATTTAAAATATTATTCACGCTTAGATA
GTGGCATACTAACACGCTAGTAAAGTCGTCATCTATCTTTCCGACAGTTACATGCTCGGT
AAATTTGAGACAGTCCTGGAACTGGAAGAGCAGCCCGTACCTGAAGTTAGGGTCATCCTT
GTAGTCGTATCTGACAGCTGCCGGAGTTGGGGCGGCTGCTGCTGCCCCCTCTTGATCTTT
GGTCACAACGGAGGAAGTTGAGGACGAGGAGCTACCAGATGAGCTGCAGGCAAGATTGCC
TTTGGCTCTGGCCGGCGCGTGCTTCCTGTGCAGCAGAGGAGACGCAGACGCCGAAGGAGG
AGAGGGGCAGTGATTGGTCGAGAGGAAGACGGCGCCGTGAGGAGGAGGAGGAGGAGGAGG
AGGAGACGGGAGCTGCAGCAGCCAGAGGGAGGAGGCCGCCATTTTTCAGGGGTGGGCGTG
CTCGTGCCACACTCCCTCCCTGCGCCTCGCTTCCTTTCCCCTGGAGAATAACGCGACCAG
GGGACGAGGGAGAAATGGAGGGGGGATGTGGGAAAAGAATGGAGGATGAACCTGCGGCCA
CGTACGTCGTCAGGAGGGAGGCCGGGCTTCGGTTGGATTGGAGATAATGCGCGGTGGGTG
CTGCTCCCACGATTTGTTGGCTCTTTTATTTCGTCTCTGAACCGTTTCGTTGAATTTTTT
TGTTTTGGAGATGGGAAGAAAAGAAAAGAAAAGATTTGGTTATCCAAAACAAAAATCTCG
GTGTCTCAAGGTGAGAAGTCAGTCAAGGAAGTTACTGTCCATGAGGAAGAAAATGAATGA
AAACGAAACAAAAAATGAGGTTCTACCGAGACTTGAACTCGGGTTACTGGATTCAGAGTC
CAATGTCCTAACCGCTAGACCATAGAACCTTTGGTGTCCTGCTTGCGTGATCTACCTTAT
ATATCACTGGTTTTATCGATTTTCCAGAAACCATACGTACGCTAATAAAAATTAGACATT
TACAAATATTTTGCGATTAAAACAAGTATGGACGCTCTTTTCTGCAGTCTTAAGATATTT
ACCATTATATTTACACACTGACGCTAAATGCATCTCAATCTGTTCAACGGCTTCTCGCCA
AGCCTGAATTCTCCTAATTTTCAAAAAATAATTAATGTGATTTTAAGCCTAAGCACAGGG
GAGTCCGGAATGCCATGTGTGTGATCCACATCTGAAGATAGGGGTGGTCGGATATTGGGT
TTATCACATGACGCGGAGATTTAATCCACTATTGTAAATTCGATGTAGGTTGCTCCTAAA
TGTTTTCCATCCTTTTTTGCTTAGTTCAAATGGTAGGAAGGATGACTATCATGTGTGTGT
TGTATTACCTCCGTGCCAAATTACTTGTCGTAGATTTCGGCGGTGCCAGCAATTATTAAT
GTGTAGTCAATTGAAACTTGTGTAGTCATATGTATGTATTTATGATTTTTTCTGCATCAT
ATATACTTATTGTATGTTTTTTTTGAAAAAAAGTTATGTTGTCATTTGACTGCACATCTC
ATGTATGGCTTCGCCACTGGTAGTTTTGCCTAAATACGGATAGTAATTCGAACGGACGGA
GTGCATGATGAATTGGTGACGGTATTCAAGAAAGTTACCTCATCGTGATATCAAAGAACT
TTTACTTGATTACTGCAAATGTAGAGGACCAAACGATTAATGATGATAAAGTTGTTTGTA
CTTAGCATGAAGAACATATTAATGCTCTTTTTCAATGTGTGAAGCCATGTGAGTCTTTGG
CCTTTGGGTCCAACTACCTTGAAGATGGTAGCTCAAACTATATTCACCAATATGTATAAT
GATATAGCAATAGGATTAGCAATTCATGAGTGCGACATTGTTGTTGGAAATCAGAGGTGT
GTGTTGATCATATGAGTTAGGACAAACAATCACGACATCAATACCGGGGACTTTCTAACA
AGGTTTAGGAAAAACATTTACAATCCCAATGCATGACTACAAGCGCTTCGCCATGTACTA
AATTCTGTTTATGCCGAGGTGCCTTTGTATATATTAGGTCTGGATTACATGTGTCCGACT
TAAACACGTAGATTCGTCCACTCTTTTTTTCATATCTCAAGAAACTTTTACCCCCCCGCG
TGTCCTACTTGGGTGACTCGAGGGGCGAAGCCTAGACCTGTGGCCTCCTTCCTCCTCAAT
CTCCCGTCACCGACGTTGGAAGCAGCCACCGGGCAAGCTCGGCACGCTACCAATGAAGGT
GGTTGAAAGCACATATGCTCCCTTGATGGTTTTGGTAATTCATGACAACATANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGGTATAGTCCACAAAGAACATTGGCTAA
AGGATTGTGAGGAGAAACCCCTTGATGCAAGGAAAAGAATATGATTGGTCAAGCTTCAAG
CA