morexGenes - Barley RNA-seq Database

Contig contig_1574963

Source Contig contig_1574963

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1574963 (1508 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_1574963

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_16936	1	399 bp	MLOC_16936.1	Available	Available	LOC_Os10g26560.1, FRAME:-2, EVALUE:5e-33, 13110.m02264 protein expressed protein

CDS Structure of MLOC_16936

Contig Sequence (1508 bp)

>contig_1574963 1508 assembly3_WGSMorex_rbca.fasta
CCCTAGCCGCCGCCTCTCCCGTCACAGCCGCTTCCCCCTCCGTGCGAGGCGGCGCCCACA
CGCCAATGACCACGCCAGCTTCCCTCCTTTCCCTACAACCTCCGGCCACGACCCGGTAGG
ACCCTAGCTCCTGCCACCTCTTAACAATGATTACAGTGAGCTAAAACTATAATTACTACA
CTGGTGACTGTTTCTTCTAATCATGTGCCAATGGCGGTTAGGCAATCATTTATTTTCAAT
TAAAAACATCTGATTTAACAACATTATTCACCAACAAACTTCAAACCTTACAATATTGTA
ATCTTATGTGCCTGGATCAGTTATATGACATAAAGTTCGCAATCTGTAATCAAAGGGCTC
CAATGGTGATACTTCATAAGGCTCCGTTTTGACAAAGGTTAACATGATTCCTCATTTTTA
GTAGTTCGTGCAGTATCGGTTTGTAATAAATAGTCCAGCGAGTAAATATTTCATTTGCAT
TTTGCAAGTGCAAGGTTTAAAGTTAAACTTACTTTGCTTATCAGCTACTCCCTTCAGTTC
TGCATGATAGGCTTCAAATTCCTCAAGAGAGTTCTTGCAACCAAGCAACTGCTGATTAAC
CTCCTCCTTAAACTTCTCATGAAGAACCCTTAACTGTTCTTGTTGCTCTGAAACCAGAAG
GCGTAGGACCAGGTTATATCATTTGAGTAACTAGAGTTTATTCAAGAGAAACAACAGAAG
ACATGCAAGAAAACAAGGTAAAGTACAAGGATTCACAAAGGAATCTTGCCCCAAGTGTGC
CTTACTAACCAAACAGGCGACTAACTTGGTCAAACCTACCTAACTTGTGGTGTGGCATGG
TTAGCATACCAAACAAGAATAGGTTCTAAGCCTACATATATGCATACACAGTAAAAAGTC
CAAAGAGTAGAAGATAATAAATAAGAAATAACCAAACCATATTGGATAGCTGCAGGCAGA
TTGAGTATTCATGGCACTGATTTTATGCTTCAGTATTCAGACAATGGAAGTGATTCAAGA
ACAAAATTTATATGTCTCTATATGAGTACTCTACTACTTATTGAAGTATAAGATTGTGCA
AATTGCTCGAGCTGAATAATCCAAATAGGTTAAGTATGAGTGGCACAATGGATCAAAACA
CCAGTACATCATATCTTTATAGATACAGCTTTCAGAATGGATTCAGACTAATGGGTCTAA
TTATCATAAAACTCATGTTTCACAATAACAGACCACAAAATTAATTTCTGCAGTAACATA
ATATAAATTGTACCTTCAAATGTTGATTCTAGTCGCTTTCTTTTAGATTTTCCTGCATTG
ACCAGCTTATCCCTGAAAGTATAGTTGAATGTGTCAAAATAGCTGCACCTCTAATATATG
TGATACTTCTATAACAAGCCTATATATATGATTAGGTGTGTATATGCAGATAAGATGTAC
TCCCTCCGTTCCTAANNNNNNGTCTTTTTAGAGATTTCACTAGAGAACTACATACGGAGC
AAAATGAG