Contig Data
morexGenes
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Map Locations of contig_1574662 (3714 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_1574662

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_16843 1 1328 bp MLOC_16843.1 Available Available LOC_Os04g44950.1, FRAME:-2, EVALUE:1e-146, 13104.m04498 protein short-chain dehydrogenase/reductase, putative, expressed





CDS Structure of MLOC_16843






Contig Sequence (3714 bp)

>contig_1574662 3714 assembly3_WGSMorex_rbca.fasta
GCGAACCGTCCCACGAACCGTCCACATGATTTTGTTGGAACCAACCACATGATTTTAAAG
CCGAGGGATGTTACAACTGACATTTTTTTGTTGGAACCAACCACATGATTTTGTCGCTGA
TTTTTATTTGCTGCAACGAGTGTTTTGTCTTGCTACTACCAGTGTTTTCATTTGCTACTA
CCGGCGACAAGCTTTTCTTGTGACATAATTTGTGAGGATGATGCAACCTTGATGACGGGC
GAAAAACGTTTTTTTGCTGCAAACCAAGATGTCTTTTGCTACCATCGGTTACAGGGTTTG
TTACCATCGTACACGGCGCCTGGCGTGACGTTTATTTTGTTTTTTCTACAAGCACTACGA
AATGTACATCGGATCAACATTTTGGCTACAATGGCGTCGGAAGACGCAGAGACGAAGCCA
GTATGCAAGTATAAGGGGGCAAGTTTGTTTATGAAGAAGCCAAAGTTCATATGAAATGAA
TTTTTTTGTTTATCATAGTAGAAAAAACAATTTGTTAGGGGGGTCTAGCCCCCTGGTCCC
CCCCCCTAGATTCGTCCCTAGGCACACAGAAGCGGTAAGCTTTTTTTGTTGGAGGCGATA
AAAATATTGCTACAACCGGCATCGTTTTTTGCTGCAACCATCCATGACATTTGCTGGAAC
TGGCTTCGAGATTTGCTGGAACCAGCGTAGTGTTTCGCTAGAAGTAATACAAAAAAATGG
TTCCATCGGAGTCGTTTTTGTTGGACCAGCAAAATTTGCTACATCCGGCATCTTTTTTGC
TACATCGGCATCGCTTTTTTGGTGGAACCCGTGTCTAGCTTTCACCCAGGGAGAAAATGC
TTTAACCATTTGTGGAAAAGCTTCATCCGACTAGAGGAAAAGCTTCAAAGTGACATGAAA
AGAAAAATTCCATGATGAGAAAAAAACTTCAATGGCGGAAAAAACTTCAAGCGGCAGTGG
AAAGGGAAAGGTTCAACCGGCGGGAGGAAAAGGTTCAAGCGGCGATCGGTGGCAACGAGG
ACGGCGACCGAGGACGTCGACCGATGGTGACGAGGACAGCGACCGGGGGCGAGGGCGACG
ATCGGCGACCGAGGGCAAGGGCGGTGATCGGGCGGCGATGAGGATATCGACTGGTGATCG
TTAACAATAGCGTTGGCGTTCGTGCGTGTGAGGAAGGAGGCGATAGAAGGGTGTGATCTA
ACGGCCTTAGGCAAATGGATCTCAGGCTGGGCAAGCGTCCGACCGAATTGTGCGGCCGGC
GCACCGGCGCAGATCATTGCCTAGTTGAATAGGTAGTTATGTTATGGCACGGGCAAAAAA
ATCATTCGGGCGTCTTCAACATGGACCCTGAACTGAGTCCCTTGCGGTAATGCGCGGGTC
GCGTGCTGCCGTGCGCCAAGATGCATGCGCTGGATCCAGCGGTAACAAGACCGTTCAAAC
TCGAAGCCCAAAAAACTGACGTTCGCACTTGATCATGTCCGTATATATTTTCCGTTATTC
GCAATTTGAAGCTAGCATGTAACACCGTAAACCTGATAGTACCCGTACCGCACCGAGCCG
CGCAACACCAGCAATGCTACATCGACGAAACTGTACAGGATAATACGGGGGTGGACTCAA
TGTGTCAAACAGTGATTGGACTAAGGGGTAGGTTTGGGTCCCACCCACCTGAAATCAGGG
GGGTCTGGTTTAATTAGATGGAAGGAGCCCGTAATTAGCCTGTAAACGTCCGTACTTGTA
GCATTTTTGCGCGCAACACACACGCAGGCACGCACGTACCGCGGCTATCTCACACGAACG
GCGCCTCCTCGCCCTGCGCGAAGTACGCGCCGGTCGGCCCGCCGTCAGGCAGCAGCGCCA
CCTTCACCAAGCTGCGTGCGCCCTCCTCCGGCGTCAGGACCCCGGACCCCATGCTCATGT
CGGTCTTGACGAAGCCTGGGTGCGCGCAGTTGACGCGCAGCTCGGGGTGCCTCCTCGCCA
GGATCCTCGAGTAGGCGTTCATGGCGGCCTTGGCCACCTTGTACGCGGAGAACTTCCCGG
GCCACCCGTGCGGCTCCAGCGCGCCGGACTCGAAGTCTTCCATGAACTTCTCCAGCAGCT
CGTCCAGCCTCTCCTCTGTCAGGCCATCGACGTCGTTGAGCTCCTGCCGCACCTCCTCGC
TGCCGATATGCTGCATATACAGTGACAGACATCTCTCACATATGGCACTGGGCTATCTAT
CAGTGATCAGTGAAAAAAGAAGAGCTTTGCTTACTCTTAGCAGTCCATAACTGGAGGAGA
CGTTCACTATTCTTCCATCGGGGGAAGATCGCAGCAGAGGGAGCAGGGCCTCGGTTACAC
GCTTCGTGCCGTAGTAGTTGGTCTGCACGCTGTTCTTCGCACTGTCGATGGGCTCCCGGG
CGTTCTTCAGCATCCATTCAACTCTCTGGTGGAAATCCAGGCCATCGAACTGTTGCAGTA
TGATGTATCGGCCGGCACATAAACTTGTTCAGTTTGGTGTGCCCGACCAATTTCAGCAGA
AGAAGAAAACGTGACCTCACCTTTTCCTCGTTGGCGTCGAGCTCTTGGCCGTACTCAACC
CCACCAACTGCGGCATTATTCACCTGCAAATAAACCGAGCACATCCATCCATCCATCCAT
CACCGGTGTTCCAAACCTTTGGATGCAGCTACTAGAACGAAACGAAAAAACTTGCCAGAA
TGTCTAGCTTGCCAAAGCGGGTCTTGAGAAAACCAGCCAGTGCAGCAGCGCTCGAAGCTT
CCGTGATCTCCAGCCGATGGAAGACGACCTGGGAGAGCCCCAGCGCGTTGAGCCTCTCCA
CGGCATCCCCGCCCCTCGTCTCGTCCCGGGCCGTCAAGACGACCGTGATGCCGCCGCTGG
CCAGCTGCCGGCACACCTCGAAGCCGATCCCTTTGTTCCCTCCGGTGACCACGGAGACCC
TAGCAACCGCAGTCGATGAGATTCCTGCAAATTGAAAGGCAAGAACTGGTAAGCTTGTAT
CGCGGCTAACCTTGTGTTTGCCAGGGTGGGGAGGACGGCTCCTTCCATGAGTGGAGGAGG
GTGCACAACGAGCTCCAGCAGCACGTGCGATGGGCCGCTCCTCACAATCGGAGACCAAAA
ATCCTAGAGCTATAAATCTGAGACGGTTATGGTTATGGGAGGAAGGAGAGCAAGATACAT
ACTTATAACGGCTTCGGTCCTATCTCGGTCGCGTTTGTGGTGCTCGTCCTCGTCCGGCAC
AAGCATCGAGCATGATTTAGCAACCTCTCAAAAGGATCAACTTTTGGCAAGTTTGATTGA
AACATTGACACATCAAAACGATGGTTAGCTAAAAAAAATTGTTAACAAGCCAAGCATGTC
CATCAGCCAGCAACACCCATACGTCACGGTCATCCTGTTGACTGCCAGCAACACCCATAT
GTCATCGCGTGTGTGTTGTTGCATTGTTTGACCCTACACATACCCATAAGATCGATAGAC
CTCATCCACCAATCTTTACCTAATAATAAAGAGGTTATCGCTTTCGTTGGAAAACCCACC
GCGGCGATTTTTAAAAAAGTTCTTGGTTTTTTCTAAAATTAACCAGCAATCCAATTGATA
AGTGAAGCTGAATCGGTATGTGCAGGAGAAAAAAAAAACACCATACCACTCACGACCTTA
CCTCCCATCTCCAGTGCCAGCGCGCCACCACCCCCTGCCACGGCGCCGTGCGCC