Contig Data
morexGenes
Links



Map Locations of contig_1574640 (4924 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1574640

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_16842 1 560 bp AK369180 Available Available None





CDS Structure of MLOC_16842






Contig Sequence (4924 bp)

>contig_1574640 4924 assembly3_WGSMorex_rbca.fasta
AGACAAGAATGGCTTCTACTGGCGTGAAAGATTTCTACCGGCAGAAGAAGAAAGGAGGTG
CCGGCAAAACTTCAGCATCTTCTAAGAAGAAACCACAGAATTATACTGGAGGGGCCTCTG
TTGGGGCCTCGAATAAGGCTCAGACAGCAGCACTAATTTCTCACGGATCCTTTGACCTCA
AAGGTACCCGCTGGAGAGATTGTTATGCATACAGTTTAAACTCACAAGTGCTTTATGTTT
GCAAACAATAACTCTTGCTTATGATGCTGCAGATGATTTCAGTGAGCAAGAGGAGCAGCT
GCGGCAGTTTGACATGGACATGAAGTTTGGCCCATGCATCGGTGTGAACAGGCTTCAGCG
CTGGGAGCGTGCTTCCGCCATGGGCCTCCAGCCACCGCCCCACCTTGGTGATCTCCTAGC
GCGCGCCGCCTCTGGAAACAACCGCAACAACGGCGGCCCCTCCCCTGAGTGCCTCTGGGA
GGGTAAGATCTAGAATCAAATCTCTTCTGTGGCAAGTGTTCCATGGAAACCTAGCACAAC
TTGCCTACTGTAGCATGAGACTTCTGAGACCTTTTTACCACGCGGAACTCTTGCTGTTGT
ACTGAATCCTTGTCTGTTTTTCCTTGTCAGTTCGTTGCTACTCTAACTCTTGCCAGTGTT
ATCTTCAGTTCACCCCGTGCGAGTTGCTTACCTTTTTTTTTCTTCAAAAATACTCCTTTT
CCGAGAGGATTTAATGGACACGCCCGTTTCTGTCTGACCAGCAAGTACTACGTCTTGTTG
GTTGGTTTGTTTGTCGGGCGAACCGAACAACCAATTCATGGGCCATGATGGTGAGAGTAC
ATAATTTAAAACCTTGGCCGTGCAGGAATGCTTGATGCGCAGAGGAATTCTGTCACTGTA
GCATGGCTTTGTGCACAGGGTAGAGCTAGAGCAGCACCAGCACCAGCACCAGCACAGCTT
CTGCCTTACAATTCGTATGTACAATGCGGAAAGATACGGGTGCCTCCTTGTCTGATGGGA
TGAGGCGCCGTGCCAGGTCCACACAATGTTCGACTCAGAGGCACCGTCTGAAACTCGGTA
CAGTGTTCTTCAGCTGCAGCGTCCAGGCCACTCGGGTCCAGGTACGAAAGATCGATGGGA
ACTTGGTGACAACGGACAAGTGCTCATCCGGTTATAAAAGTGGCCGTGTTGCACCCTTTT
GGTCGTAATATATGTATGGAAACGCAAAATCTGGGAAGACTCGTACATACTCCATAAACT
ACATCGTTTCTTCACGAGGAACAGTAAGCAGTTTCTTTTGTCCTAGCATATTTATCAGTC
AGTGAAATTGAAGGTGGATCTTGCTGAACCACTACCCATGTAGTGATCCGGATATAATTT
TTTCACAAGCGCAGCAAATGTTCTGCTTCCCGATTAAGAAGAGGGAAACAGTGTAAAACA
GATGTTGCAAAGGTGCAACTGGGTCTGGACTGCACGAAGATTAAGGGCCATGTCTCCAAC
GGGCTTGTCCAGGAGGCTTAGATCATTATGCTTCGTGTGTCTAAAAAAATTTCATCATGC
TACGCAAACCGGGGACAATTATCTCATTCGCTTGGAAAATAAATCCCATCTTGGATAACG
CACTGTTAAAGGGAGTAGATCAAGCAGATAAATCCTTTCAAGAAAAATTATGATGCTTCA
CAAACCAAGGATGGTTTACCCCCTTCCTCTCAAAATTCCGTGATTCCTCCCTTTCCAGTG
GTTTTAAGCAATGCAAGCCGCCACCGAGTTATCATCATGGGCCAGTTTTGCGTTTCCACT
TCCCGGAGATCTTGTTCCACCAACCATTTATATCTGTAGCACTAAGCGAAATGAGGAGAC
ATCTGGGTGCAAAACATTGAAGGATTGCGTGTAACGTCCCAAAATTCTAAATTTTGGAAT
GTCATATTAAATGAACTATATTGATTGATTGTCTGAATTATTGTGTGAAACTGAGTGAAT
TTGAAAACTTTTGGAAAATAGAAGAGAGGGGATAAAATGACTTTCCCAAAACTTTCTTCC
TTGCTTTTGAATTCAAATCCAATTCAAATTTAAAATCATAGAGAGAATATGACACGACTT
CTTCAATGGAAGAATTTGAAATGGGATTTGAAAGTTCTTAAAAGTTTCCATTTGGAGTAT
TTCCATTTGCAAATTCGATCCATTTCAATTTTTGAATTGGAATAAATTCAAATGCACATG
ATCATATTAAAAATAAAGAGAGGAGAAACATCACACTCAAAACCAGGGGCAAATTTGATT
TCATTTGAATTTACAAACTCAGAAAAATGTTTGGAAAATATTTGATCTTTGGATCAACGA
CATTTTTGAATTTTGGAAAAAAATATTAAGTATTTCAAAAATTCTTGAAAATATGTTCAT
GTTGTAGAGCTATTTTTTCTGAACTTGTTGATATATAATAGGTATATATTATATATACTT
TCTTTGCTTTATTTTTCATTTTCTCTCTGATCGGATCCGAATCGCGAACGAATCGGTCAC
CTACCTCTCGCGCACCGACCCCACCTGCCCGACCCGAACCCCCCTCGGTCAGCGCCTTCC
TTTACCCGACCTCACCTTCCCTTTCCGACGTATCTCCGGATCTGATCCATCTCGCCGCTC
CCGTTCCGTTTGACCCCACCAAATGCCTCTCCTATAAAGCCCCGACCTCCCGCACCCGAT
TCCTCCCTAAAACCCTTCCTCCATGCTCCACTGCCACCCCAACATCTCGTCATAGTTTTT
GCCATGCCCGAAGCCCGTTGAGCTCGTGCCGCTCGCCGCAGTCTGCCCCGACACCGTCCG
ATGCCACCAACCTCACCATCGTCTTCGCGTGCATCGATTGGAGCTGACACCATTGCCGGA
AGACCATTGGAGCACCATCGCCGTCAACCCCAAGCCATCTGCCTCGCTGGAGAACTCCAT
CGTCGCCGTTGTAAGCTTCTCTCTCGTGTCCACCGTCAGATCTGCAATGAACGATCTAGA
TTAGATCACTTAAACTCACGAACCGGTACACGCTAGTGTTCAGTTAGCCGCTGTGTTCTT
TCTCGCGCACACTTCGCTGCCACAATAGGAATGTGCCACATCACCCCTGGCCGATACTTA
ATTCTTGTTTTGTTTTATTTGCTTTATTTCAAATCGAGAGGAGTTCATGACTTTGTTTTG
CTAATATCTTTTAAGTTTTTGATTGTTTTTAGTTGATTCTTTTGGCAACATGTCACAAAT
AACATGAAGTTTTGCATAGATTCAGAAGTTTTAAAATTTGCATAGTAGATTTTGAATTTG
CTCAAAACCCTAGATTGCTAATATCTTTTAAACACAAATTTATATTGATTTAATTCCCTT
CGCTACTAGTCCCTAATCAAATTGTTTACTCGGTGGCATAAGAGAATTTATTTTAGAGAT
TATTTAAATTTGTTGAGATAAAATCCCTAGGAAAATGTCGAGAGGCAAGTTGTTCTTCAT
GAGTCTGTTACCATAAAGGCTCAAACAACAGATGATGCACCAGCTGCTGAAACCACCGCA
ACCGAAGACAATGCAGGTGATCCTGCTGAAAACGTTGCTTCTGCCGAAGACAATGTTGAA
ATAGAAACTGATGTGCCTCAACGTGATGCACCAATGGTATCATCGCCAATGCATGAAGGC
AGTGAATTTGTGGACATTGGCACTCCACTAAGGTGAAACGTGCCTGAAGCCAATCCTAGC
ACTCTGCCTAGTCCATTTCCAACTCTAGTGGCAAGATCTCCTAAATTCCCATTTGCTCCC
ATGGAAGTTGAAACAACTGAACATGCATCGCCTCTCAAAAGGATTCACAAAGGACCAAGG
CCACCTATATCTTCAATGTAAATCATTCCAGAAGATGAAGTGCGTGTGACTCTGACTGCA
TCAGTCGATGAAGTTCTCATACTTGAACATGTTGCTCGTGAACAACCTTAGATCGAAGCG
AGTGCATGTGAAGACATTGCTGCTGATGACACCGTTGCACCTCTAGAAGCACCGATTACT
GATGGAGAAGCCAATGCTCCATCCCCTGATGGTTCTCCTGTGCGTGCTACGCCATTGACC
GACGACAATGCTGACAATATTGTCATGGATCGCAATAGGGCGGGAGAGATGGTGCCAACA
AAATGGCCCAAGCTTGTTTCACCACCCAACAGAATGGGTCCACAATATGAATTAAACATC
TTTCGTCGCCCAAAAGTTATGAATCCAATGCCTAGGCTTCCAAGTCTTTGACAACTAGGA
ACAACACGTCCTCTTGTCTTTAGCGTGAGGGAATTCCGGCTCGACAACACTTTCCTTGAT
TCTAAAAAGAATCCTTATACGCGTCTAAAGATTCAATCTGATCACTTCTGGAGTGTACCT
CAACGTACCTATTATACATGTGTGCTATATGACCAAAAAGGATCCCCCCAAGCATCTCAG
CATGGAAGCCATGAGTGGTCTTCCTTGTTTTGACCAGGCCTTCAATTGTCTTTGAGATGT
TGGATTGTTGTCGTTTGCTGTTGATCATGAAGATTGGAATTAAGAACCAATTCTTCAATT
TTATGCAACTCTCCACATCTTTGGCTATGGATGAGATCTGAAGACATGGGTTATGGATTT
CATGATCCATGATGGGCATGTGAAAGCTCTTGCTATGTAATTCTTTGCCACCACTCCACT
TGCTGCATCAGGCTAAGATCTTGATCCAAAATCTCCCACCTATGAAGAAGCCATAAGAAG
CATCTTTCAAATGCGTGAGCCTAACATGTCTGAAATTTTGACACTTATGAAGCCTTTTGT
TAGAGCATATATCTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATAGGCACTTATTGAAGTCCATCTGTTGG
GTTC