morexGenes - Barley RNA-seq Database

Contig contig_1574501

Source Contig contig_1574501

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_1574501 (2801 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_1574501

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_16791	2	1076 bp	AK360925	Available	Available	None

CDS Structure of MLOC_16791

Contig Sequence (2801 bp)

>contig_1574501 2801 assembly3_WGSMorex_rbca.fasta
TATATANATATATATATATCCATATGTAGTATTTAATGTAACATCTAAAAAGACTTATAT
TTAGAAACAGAGGGAATACATTTCTGCGGTCACAAAGCAACAAAGTGTAACAGAAGGAAG
ATTTTCAATAAAATATATTCTGTGATATCAATAGAATGAAGTCACAGTTTCCACTACTCC
TTTGCTCCTCCCATAAAATATATTCTGTGATATTTTCCATGTTTGTTCAGGTTCCGGAGA
TATGTATCCAGCAAAAATGGTATCAATATCCTGAAGTCGTGATTTCTTGTAATTATTAAT
TTCTTACGAATAAAAAGATTAAATTCTTCTCATCGTAATTTAAGTGGATGTTTTCGATCG
AACTAGTCCACTTCATTGACCCATCCAACGTGTGCTCAGTTTGTAAGCACATAAATTTCC
TCAATTGCCTAGCATTTCAGAATATTTATGATTTACTTTCAGTTTTTTATATTCAAAATC
GCCCATAAATTTCCACGACTGGATATTTCCGAGTGTTCACACGTTTCTTAGCCTACTGTG
AGATACTCCTTTTGTAAACTAATATAAGAGCATTTAGATCACTAAATAGTGATCTAAATG
CTCTTATATTAGTTTTCGGAGGGAGTATCAACCAAGCTCTGTACCACCTTGTGTTTTTGC
TTATAATACCATATCATGTTAGGTGGTACTTATATTTTATTTTCCACTAGAAATGTTAAC
TGCATCAGTTTCACTTGTGAATTATGGTTATTTGATTATTGCTCATAGTTTCAAGTAAAG
TAAAAATGAATTCATGGGAGGGAGAAATATTGTGTTCGGTTAATTACACGTCAGGAGTCC
AAAGCAGGGAAAGAGGTAATGTGCAACGAGACAAGATAACTAATATTTACAACTGATTAC
ACAGCCAATGAAATCAAAATTGACATATCACACTTGAAAGAATATATGGAACTGGACTAC
GGTGGCAGTAGATGGCCTGAGCTACAAGTGCTCGTCTCTTAACCATATATCATGATCTCA
GGGCTGCAGCCAACCTTTGCAGGAAATAAAGTAGGCAGCACCAAGGAAAGAGATAACAAC
GGCGAAGGAGTTCTTCCAGAGGCAGTCAAAATGAAAGTAGTTTGTATCTCACTTGTACGC
ATACCTACAGAAACAGCATAATAAAATGTGAAATATTAGTACTGTAGTGCAGAGGATGAT
TCACAGCAGAATAGCAAAGCTGAAGAAGAAGAATCGATAATTCGCTTCTGCTCCCAGGCT
CATCATGCTCATTATTAACTTATTACCATTATGCTCAGCATGGCTTTCTCCTGTCAACTT
TGAAAGGAATGTTCAGCCATCTCTTCCTTGGGAACCGCTCTTTGGTTTTCTTTTCACTCG
ACTCGTCATCTTCACTTCCGCAGCCTTCCATGTGCTGATCCTTCGCTTTCTTTTCTTTCC
TCTGGTTTTTTTCTTCATCAAATTTGAAGGAAGGTGACGATTTAGATTTATTCCTGCTCG
GAGTCCGTTTTAGAGGTGGATTGTTGGTATAGGATGCATGGATTACATTCCTTTCATTCA
GAAGCTCGTCGATCTACAGAAGGCCATGAGTACCCAGATCAGACCATCATGATAAAGAAG
CAAAATGAGCTAAGCATCAGAACTGAACTTACCGTTTGCATTTCTTGTGTGTATTTGCTA
GTCATTTCAGTGAACTTTGCCAAAACCTGCAAATCATGTTGTTTAAAGAATGTAGGCTTT
CCATGCTAGAAGTGCAAAGAAAGAACCAGATAGAAAATAAATTTAAAGAAAGCTGAGCAC
GTACTTCCCGGTACTCCGACTCGAATTTAGACAGCTCAGCTCTTTTTGTGAGTATCTTTG
CCTCCACATGTTGTAGCTTCTCCTTTTCAGTAGGGAAAGATTCAGCACAGACAACCTCTA
TAGTATAGCTTGCAGTTTTGAAGAAATTGTCACCTGAATTAAGTAATCAAGTTAAGGATG
CTCCACACTTCCTCAATTAATTAACATCACACCCATCAATAAACGAGATTTTACCATAGA
CGGCAAAAAAGTGGGTTCCCGGTTTCAGCTCATTAATATCACATGGTTGGAAACTATCCA
GCCTTTTAAAGAATGCGCTATCAGGATCCTTCGCAGCTGGTGCCTGAAAGTAACCGGAGG
TAACCGGAGGTTAGAAAGGCAGAAAATGCCATTGAATCACTTGGATAACCCAAAGAGAAG
AACTTTTGTGAACTCACTGAGTTATTTTGCTCAAAACGATACACAGGAAACCCAAGAAAG
TACATTCCTGCGGAAGAAACTTTGCCGGCCTTTACACTATCTTCCTGCAGCAAGCTGCGT
GTCAGTGAAACATACTCAAGCAGTAACACATCACAAATCTAAACACAACAGTTGCTCTAG
CACATTTGATAAAGGAAAGCTCATCCAAGCAAATATTTGCTACTTTCATGCAGTGTTCAA
GAAAGCGTTTTTAAGCGACGCTTGCGATGGCAAAGCGCTTCGCTTTTGACCTAAGCGGTA
GATTAAGCGTTTCTTTTTTAAATTTGGCCAGAATTTGACTGTTTTTGAAGTACTTTTGCT
TGTCTGATTGCGCAATAATGGTAATGTCCCATTTATCTTATTATTAAGCTCTGTTTGGGA
ACTATTTCCTTCATATGCTGGCAAAATTATGGCCACATGATCTCTATTAGGCTATAACTA
TTGAACTGAACTGCATTTTAGTTGTTATTTTGCTTGCCATNTGAACTTAATGTGTATTCG
CTATGGTGTGAACTGTATTTTACTTCCTCCGTTCCTAAATA