Contig Data
morexGenes
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Map Locations of contig_1574234 (3775 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_1574234

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_16701 3 1319 bp MLOC_16701.1 Available Available LOC_Os06g41700.1, FRAME:-3, EVALUE:2e-163, 13106.m04354 protein expansin precursor, putative, expressed





CDS Structure of MLOC_16701






Contig Sequence (3775 bp)

>contig_1574234 3775 assembly3_WGSMorex_rbca.fasta
TCGAGTGGCCACCATAGGATTAATTTGTGGACGTTGTTGCACGGTCCCACATGTTAGCTC
CGGACCCACGTCCACGCAGTCCCACATGTAAGATCCGAACCCACTATCACTAATGCCGAC
GGACGGAATGGACTCAAAACTGTCAGTTTGGCCTCGTCATAGTAGTTGCACACAGACTAG
GGACAAAACTGAGCACAAAACTGAACACGATTCATAACTAAAAGCAAAACTGAGCAAATG
GACACCACTAAACGTAAAATGATAATTAGCCCTAGAAGGATACTTCGGGGCAGGGGCACC
AGGGCAGGCCGGCAGGGGCGGGACGATGAGGACGCACACAAGTCTTTGGATTTCAATCCA
ACGACTTTGAAATAGGCTGGCGTGGTTCTTTTAAGGCAACTTGCAAACAACTACGCCCTA
AAGTTGAATAATCATGCTGGACGTGTGTAGCGGGCAGAGCGAAAACCATCCACTTTCCTG
GGTCACGGCATTTTAGTAACCCTTGTAGTTCTAATTACAGCCGTTGGAGCTTGCAATCAA
TCCTCTTTCACCTACTCGACGAACTGCTTGCCCTGCAAATGGATGTTTCTCTTTCACCTA
CTCGACGAACTGCTTGCCTGCAAATGTCTGCGCAAACATCCAGTCCGAAGGCGCGACGTT
ATACATGGTGATCGTCCTCCCCTTTCCTCCGGTGACCTCGAACGACAGCGGCTGGCCTCG
CAGGTCCGCGTCGCACTGCCAGTTCTGCCCCCAGTTCCTCCCCATGGGTATCCACCCGGT
CCTCGACCCCTTCACCTTCACGGCGTCCACCTCGCCGTCGGCCGCCACGTTGGTGATCAG
CACCTGGAGGAAGTTGGGGCCGCCGGTAATGGTGAACCGGATGCCGCCGGCCCTGTCACA
GCTCACCCTGCAAAACCATCGCCAATGGCTGGTCACAGTCAGACGCCCCGTGATTTACGC
ATGGTGATTAAACTGCACACCAATTTTAATCTTATCCAGAACTACTATAAAGGATACTTG
GTGTTTACTGCTGCTGGGACATACTCATAGCATTGGACTGAAACTGTGGAACTACTCATG
ATTAGCACACACGACACAAGTCAGATTCAAAAAAAGAAGAAATCGTCAGTGATTAAAGCT
GCCCTTTCCTCATCAGCCCTGATACTTTCTACCCAGCAGTCCACAATGCAAAGTGGCTTC
AGACATGTTACACATATGTTCTATGATCCATTTGTAATCATCAGAATTCAGACATCATTT
CGAACTTCTGCAAAAGCAGGCTAAAAAAAACTCAAGAACGATAGTGCCATACTTTTAGCT
ACAACAGATGCACAACTCAAGAACGATAGTGCCATACTTTTAGCTACAACAGATGCACAA
CTCAAGAACGATACTGCCATACTTTTAACTACAACAGATGCACAACTCAAGAACGATAGT
GCCATACTTTTGCACAGATGTATTCAGAAGTTATATGTTCAGAAATGAGAACTCATCACT
GACAAGCTAAACGAGATCAGTACTGCATTACTGAGAAGTTGATGAACTGTTTGTTACCTT
CGGAACTGCACCTGGACAATGTCAGCCTTGGCCTTGGCGACCCGGAGGAAGGCGGCCTCG
GTCATCTCCAGGTGCTCCTTGGGGAAGTTGCACCAGCCCCCGTAGTCGTCGGCGAGGCCG
AAGTTGGGGGCGCAGAAGTCGGTCGCCGTCACGACGACGGTGGGGCTGCCCCGCAGGCAA
TAGAGGATGTTGTTCACGCACCGGAGCTCGTAGCAGCCGCCGCAGGCGCTGCCCCGCCCG
AACAGCGCGCCGCTCAGCCCGGCCGTGTACCTCCCGTACCTGAATATGTCCAGGTCCCCG
TACCCGCAAGCGCCGCCACCTTTGGAGTTTCAAGCAGCCATTGCATCAGAAAACAGCATT
TTTCGTTTCTTCAGGTAACATGAAACAGGAGAAAGGATTGGCACCGAGCACGGGACGGGA
TTAAATGAATAAACTGAGCATACGGATAGGATACGGTCTTCAGGATTCGGAGAGTATATT
TTGGTGGATCTTGGTGAAGGTACACTGAAGGTGGGGAGGGGAAACAGAGTCGATTTCAGT
GGAGCAATTACTGTGAAGGTACACTGACTTGAGTGCAGGCAATGACAGCAAGAAGAGGCC
ATGTTTGTACTGGCCTGGCCCTCATGTTAGGATTGTCAAATCATTCAATGTGCCTCACTC
CCACTTCTTACGCAAAGGTCAAGAAATTGATTTACAGACACTTTATAGTTATTAGTAAAC
AGAAAAGGAAAAGGTGCACTAGTGCTCTACGTACTCCATTATTGGTTTTCTTTCGGCTGA
TTAGGATAGTATAGTAATGCACTAACACAGCAGAAAGAAGTTTTTGAGGTATTATATGGA
AAGCGTTCATGGTATGGACAGCATTGGCGTCAACACCCCACTATAAGTATCAAAGAAACC
CTTTTATACCATCTACTGACGCTATAAGTATCACAAATCACAATGAAACTAGTACTTAGT
AGAATATTGCTATCATCTGCAGAACATCCATGGAATGTTCATCTCCAAGTGTCAAAACGC
ATCTCTCAAATGAGTAGCAGAGTGATAGGGAACAACTTCCAAGACCAAATCTTGACATCT
GCTTTCTGCCGCAGCCTCCCAGCTTGTGGCATTTCTCTGCGAAATACGCCGGATCTACCA
AATACCACACCAGCATCTCATCCTCGCAAGCAGCACTCACCATCTCCAATCTCCATTCAG
AGGAAATGCATTGCACAGGGAAAGAAAGAGGGGCAGAAGGGAGAGGGAAATACTCTAGCA
AACATCCCCTTCCCCTTCCCTTCCCTTCCTGCCTGATATTGTTGATGCCGCTGATGAAAA
AGAATGAATAGAAACGGACGAGCACGCACACACACACACACATACATACCGTCGTTGAGC
GGGTGGCCCTGGGACTCCTTGATGTAGGTGGCCGTGCCCAGCCTCCAGTCCTCGTAGCCG
CCATTGCCCGCCAGCCTGACGCCGCCGCTGAACCTGACCTCGGAGACCAGCAGCAGCAGC
AGCAGCAGGGAGAGCAGGAGCAGAGAGCCCATCATGGCGCCTGCGCCTGGTGATCACGGC
CGGGCTCGCTTGCGGGTTGGACGGATGAAGGGCCGGGCTTGCGTGTTGGGGCGGCGGCGT
GCGGTTTGCTTTGTTCTTGGCTCCTGGTCGGAATGGCGGTCTTTTGTTGGCCTCGGGTTG
GACCGTGGTGGCGCGGGGGTCAAAGATGAGGAGGACACGGGACTGGAGCAGGAGAACGGA
ACAGGGGGCCTGCTTTCGCCACGCCCTTTCTGCCCTCGCTTTGTTGGGATTTGCGGCACA
CCCTCGCCTTTCGAGAACGCGACACCGCGTCGATGCGTTGCAGCTCTACTCCGTTGTGAG
AGTTGAGAATTTACAGTTTTGCTTGCGCAATCAAATTGAGTTTTTTTATTCTTCTTCTTG
TGCATGGTGAAAGGCCGGGGGTTTAACCTCCTTTTCCAAAAAAAAAATGGTGAAAGGTTG
TGTATGGAGCGAGCGAGCGAGTTGGAAGGGTGGGGGAACTTTATTAGGTTTGTGTACGTG
TCCTTGAGCTCGATTGATTCCCCTTCCTCGTGCTACTACTGCCCTGCCTGCTGCGTACGT
ACCCACTGCACTAGGCTCTTAGAGCATCTCCAACAGCCGCNNNNNNCAAGCGCCGCGCCG
TAAAAAAGGCAGTTTTAGCGCGCGCGCGACGCGGCGGGCAGCTCCAGCGAACGCG