Contig Data
morexGenes
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Map Locations of contig_1574117 (4261 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_1574117

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_16662 2 2617 bp MLOC_16662.1 Available Available LOC_Os01g63470.1, FRAME:-2, EVALUE:5e-60, 13101.m06812 protein C2 domain containing protein, expressed





CDS Structure of MLOC_16662






Contig Sequence (4261 bp)

>contig_1574117 4261 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGGGGGGGGGGGTAGAATCCAGGTAGAGATGATGCCATTGCGTTATAGTTTCA
GGCAAAAGGATTACGGCACAGGTGCACGGCCTTTAGGAGCTGACAAGTTCCCAGACAACA
TCTCGATAAAAAGCTTTTCTCTGTTGGTAGAGGTATGAAAATGGTATGCAGCACGCTATC
CTCAAGATATGTCTAAGGTTGCAGTCATGCAAGGATATTATTGTATCAGTGCAAAAGAAG
ATTGGGTGCAACCTACAGGAACTGCATAACTAGGAATTTTATTGTCAGCTATGTCGAAGT
GGTTGTCACAAGAAAACAAAATAGGATCGTATTTCTTCTGGTTTTAAAGGATAACGATGG
TGTCTGGTATTATCATTGATGACATTGTGATCGACAAATAAATATACACCTTGGTATCAC
ATATATGGGCTCTTCAGAAAGTTGAAAAGTACTTTAGAAAAGCATCAAACAAATAAGTTG
TTCAGCTTACAGTACGCAAAGTAAAAAGGTTCCTCAAACAACTACGCTTTAGTATACATA
TTACCCATGGAAGCTCTGAGAATCCTAGTTCAATAAGTGCAAAGTTACTTCGCATTTAGA
GTCCAGCAAAACAAAGGGTAGTATAATTCGAAAGAATATACAAGAGCTCCTAAATAGCAC
ATAGGACTAGGGTGAGTTTGCACAGGTTCAGGTGTTTAAGAGGTGTACAACACAGAAAAA
TATGTCTACATTGTTTCCCATTATGCTGGATTTATTCTGAAACAAATCCATGCAACGTCA
AACTAGCTTCCTGTGTTTTCCGCCAAAAAATTATATAGCTTTCTATGGGTCAGGTTACAT
TCACTTCCTTCGAGCATTACCAATTACAATACGTGGCTGCGAGATTAACTGAAGCATGAC
AACTCTGAACATATTATGTCTTCCAAAGCAAGAAATGCTTAGCTCACAGCGTGATCATAG
AGAACTATAAACTTTTGAAGCATGGTGCAAACTTGTGAATCACGTGTTGATTGGAGTGTA
GAAGCAAACATTCATATCAGATTTGGCATTATGTTCAACAAAGTAATATAATTTGACTGA
AAGAAACATAAACCGAAGTTCACCACAATGCCAGGTAATAGGTATACAGAGACTAATGGA
GCAGACATAAGACACAACTCAGATCTCAGAGATAAATTATACAGCGAATCATGAAGTTAC
AGGTAGAGCTTCAAAGATGATCACGAAACGTTCATGTTACACACCAAATATGTCATAATG
CGTAGGCCATAATTCACAAGCACCATAATAATTCATGTCTCTCAAGCAAATATATACATA
TACAGAGCAAACCACGAAATCACACTGCAACTTATTCCCACATTAACAGGAATTGAGAAG
AACCAACTCACAGCGCATCCTCGCCCACGTGAAGCCCCATCAGTACTCTCGACGATACTC
GCTGTAATCGTCCCTTGCGGCAGGAGCCACCTTCTCTGCCACCCTCTCTGCTGCCTTTTC
CTCCTTATACTTCACACCTTCATCAATCGCAAGCGCCCCAACGCCCCCAGCAACTGCACC
CACAGCAAGCCCAGTGCCTAATCCATACCTTTCGCTCGGAGGTGCCCCCTCAGTCCTTCC
TCTTTGTTCATACTGCCCAGTCACAGCCTCAGTCCTTCCTTTTGGCTCATACTGCCCAGT
CACACCTTCAGTCCTTCTCGGATCATACTGCCCAGTCACACCCTCAGTCCTTCCTCTTTG
CTCATACTGCCTGCCGTACTCCACAGGTGCAGAGGGCCCTGTGGTGTACTCGTACTGAGA
TGGAGGCGGTGGCGGCGGCGCAGAGTAGTACCCACTAGGACGGTAGTACTGGTCTGAGCC
GTACTGTGGCGGTGCCGAATAGGTGGGAGGCGGAGGGGCTGGGAAATAGTAGGGGGAGGA
GGAAGGAGGCGGATACTGCGGCTCAGGAGGAGGAGGTGAGCGCTCGCGAAGGGCGACGCG
GATGCGGAGCTTGCCCTGTGGGCGGCCGGAGGGGCGCAGGAGCGGGAGGGTGATGATCGG
TGAGGCGGGGGAGTCGGAGCTAGGGTTAGGGCTAGCGGGGAAGAGGAGGTCGCGGAGAGG
CGAGCGGGCGGAGCCGACGAGCGGCTTGGGCGAGTCGGATGGCTTGGAGTGGAACACGTC
GAGGGAGAGGAGGAGCGAGGGGTCGTGCGGCGAGAGGTGGGGCGGGAGCTGGAGGACGAT
GCGCTCGTTCCACGCGGGCTTGCAGCCGCCGGCGTCGTCGGGGCGGGTGGCGGTGCGGCG
GGAGGGATCTAGGTAGGCGACGGCGTAGGCGCGGAGATCGCCGCGGCGCCAGTTGACGTT
CTTCAGGTGCTTGCCCGAGACGACGGTGACCTCCAGATCCATGGCCTTGGGGGGCGCCCC
CGGCGGCGGGGGCATCGAAGGGGGCGGGGTCTGGTACTGCGGGTGGGGGTGCTGGTGCGG
GGGGAGCGGGTGCTGCTGGAGCTGGTGCGGGTGGAGAGGGGACGGGGACGGGGACGGGGA
AGCCATGGCGCGGGGAGCTCTGGCCTTCGCGCTTGCTGTGGGGGGTTGGTGATGAGTCGC
TGATCTGATGACTCGCTGCTGAGGCGATCTGCTTGTTCAGAGCACCGTGACGTGACTTTT
TTTTTTCGAGGCAACCTCGCATATTTTATATTTTATATACTCCCTCCGTTCGAAATTATT
TGTCACATAAATGAATAAAAATGAATGTATCAAGAATTAAAATACATCTACATACATCTA
TTAATGACAAATATTTTCAGACGAAAGAAGTATTAAACAATAAAATGGAATACAGTTCCA
TACATATACTCCTATATGAAAACAATCAGAAATACCGGAACATGACAAGTGTTCAAAAAG
TTTTATAGAAAAAAAAACTCACGCAAACTCATTGGAGTCCCTGCAAACAGCCAAATCTGA
AACTGTTGTTATCATCAGCGTCGTCGAGACGTACATCGAGGAAAAAGGTCGAGAACCAAC
AAACCAAAATAGAGGCTAGCGTCGTAGCCTTGTAGGTGTTGTGAGCCGAAGACCGGACCT
GCAGAACAGGCACTTGACGATGTAGTGCGTCAGTCGAGGATGTTCACCACACCAACCTGC
ATCCAGATCTGACACATCTCACCGTTATTGCCGGGGAAGAACACCAAATCCGTCATCGTC
GGGCCACCAAACTTATACCCGCATCAATCTGTCCCACTTGTCGGCGCCACCAAGATAGGC
GACAACCACCAGATAGAGGAAACATAGGGCCTACCTATCTAAACGAACAACAAACAGGCA
AGCGAACCGTCTCAGCGGCGTCGTTGGAAAGAACGTCACTGCGGTAAGAAAGAGACCAAT
GCCATCTTATTCGACACAACACCAACCTCATCGAAATGGCGCTACTAGACAAAGACAAAG
CCCTATACCTATGGACCAACAGAAAGAGGAATGGGAACCCACCCCCACCCTCTCCTCCAG
CCGCCAGAGCAGCAGACGGAGGGGAGTGGAGATCACAGCCTCGCCGACGTTTGAAGGCGG
GAAGGAACGATCGCCTTGACGTGATTTGGGCACAAAAATCTAGGAGTAATCTGCGGACCG
GAGAATAGAGAACCCAAGTGGCATGTGTCTTTTTTTCTTGAGAAATCGACTAGCCTATGT
CTAATGGGCCATTGGGCTTGGTTGCTTCTTTGAACGAGCCCGTTCCAAGGTAAAGAAGCC
CTCACGAGAAAACAAAAGAGCAACATAATAATCTTTATTTTTCTCAAAACAAACAAACAT
AATAGGGAAAAGATTACATTCTATCGGCTGATCACGCGCGCCCGTCTGCCGGCTCCGTGG
CCGTTCGATCATGTATTGATCAGACAGTCGACAGCGTCCCACGATTCGCCGAAGCCACTT
TCGTTTTTCCTGCAGCTCACCTATTGTTTCAGGACAGTTTTCTGCAACTCACCTGTTGTT
TCGGGATAGTTTGCCGAAGCCGCTTTCGTTTTTTCTGCAGCTCACCTATTGTTTCAGGAA
AGTTTCTTGCAACTCACATGTTGTTTCAGGATAGTTTGCTGAAGCTGCTTTCGTTTTTCC
TGCAGCTCACCTATTGTTTCAGGACAATTTTCTGCAACTCACCTGTTATTTCAGAATAGT
TTGTCGAAACCACTTTTCATTTTTCCTGCAACTCACGTGTTATTTCCTAGCGTCGTTCGC
CGCTAAGCCCGAGCTCCGGCCATGGCCATGGCCGCTGAGCTCCTGTTGGGGAACGTCGCA
T